Wall clock time and date at job start Wed Apr 1 2020 00:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47165 * 2 1 4 4 O 1.42894 * 109.47611 * 120.00112 * 2 1 3 5 5 C 1.42901 * 114.00070 * 89.99685 * 4 2 1 6 6 C 1.53006 * 109.47423 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47072 * 180.02562 * 6 5 4 8 8 O 1.21271 * 120.00247 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99555 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00169 * 0.02562 * 9 7 6 11 11 C 1.46500 * 119.99938 * 179.97438 * 9 7 6 12 12 C 1.52994 * 109.47162 * 89.99845 * 11 9 7 13 13 H 1.09007 * 112.95862 * 287.14685 * 12 11 9 14 14 C 1.53934 * 113.76096 * 155.49645 * 12 11 9 15 15 C 1.53935 * 86.45688 * 221.80153 * 14 12 11 16 16 N 1.47961 * 113.85909 * 58.88682 * 12 11 9 17 17 C 1.46902 * 111.00005 * 251.91231 * 16 12 11 18 18 C 1.50702 * 109.47267 * 189.99947 * 17 16 12 19 19 O 1.21296 * 119.99494 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00134 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00203 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00145 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00446 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00001 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00369 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47006 * 60.00200 * 25 23 21 27 27 H 1.48500 * 109.47542 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47515 * 300.00522 * 25 23 21 29 29 H 1.08999 * 109.46736 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46540 * 299.99496 * 1 2 3 31 31 H 1.08993 * 109.47466 * 59.99730 * 1 2 3 32 32 H 1.09005 * 109.46997 * 240.00248 * 2 1 3 33 33 H 1.09006 * 109.47588 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47326 * 300.00103 * 3 2 1 35 35 H 1.08999 * 109.47376 * 60.00148 * 3 2 1 36 36 H 1.08997 * 109.46989 * 60.00682 * 5 4 2 37 37 H 1.09000 * 109.47351 * 300.00528 * 5 4 2 38 38 H 1.09001 * 109.46612 * 59.99788 * 6 5 4 39 39 H 1.09000 * 109.47160 * 300.00488 * 6 5 4 40 40 H 1.09004 * 109.47013 * 269.99864 * 10 9 7 41 41 H 1.09001 * 109.47915 * 29.99721 * 10 9 7 42 42 H 1.08998 * 109.47280 * 150.00123 * 10 9 7 43 43 H 1.09002 * 109.46652 * 330.00254 * 11 9 7 44 44 H 1.08998 * 109.47142 * 210.00159 * 11 9 7 45 45 H 1.09002 * 113.73279 * 336.21344 * 14 12 11 46 46 H 1.09002 * 113.73078 * 107.39042 * 14 12 11 47 47 H 1.09001 * 113.76001 * 138.09365 * 15 14 12 48 48 H 1.09000 * 113.75996 * 269.45181 * 15 14 12 49 49 H 1.08997 * 109.47246 * 310.00098 * 17 16 12 50 50 H 1.09007 * 109.46957 * 69.99875 * 17 16 12 51 51 H 0.97001 * 119.99910 * 359.97438 * 20 18 17 52 52 H 0.96996 * 119.99994 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9885 6 6 2.7081 -2.6927 2.2944 7 6 2.9129 -4.1738 2.1063 8 8 2.6756 -4.6874 1.0336 9 7 3.3590 -4.9278 3.1305 10 6 3.6440 -4.3077 4.4268 11 6 3.5576 -6.3678 2.9479 12 6 4.9870 -6.6287 2.4688 13 1 5.1480 -6.3352 1.4314 14 6 5.5050 -8.0395 2.8018 15 6 6.8348 -7.3596 3.1743 16 7 6.0286 -6.1349 3.3965 17 6 6.7051 -4.9523 2.8471 18 6 7.9105 -4.6259 3.6907 19 8 8.1793 -5.3109 4.6549 20 7 8.6893 -3.5725 3.3742 21 6 9.7862 -3.2759 4.1413 22 1 10.0261 -3.8862 4.9994 23 6 10.5893 -2.1901 3.8148 24 7 10.2972 -1.4471 2.7709 25 14 12.0835 -1.7856 4.8603 26 1 13.0192 -2.9388 4.8536 27 1 12.7670 -0.5898 4.3054 28 1 11.6520 -1.5065 6.2536 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.9320 -2.2466 0.1986 37 1 1.2538 -2.5434 0.7124 38 1 1.9759 -2.5242 3.0841 39 1 3.6543 -2.2276 2.5710 40 1 4.6839 -3.9820 4.4528 41 1 2.9902 -3.4474 4.5698 42 1 3.4703 -5.0323 5.2223 43 1 2.8519 -6.7405 2.2055 44 1 3.3927 -6.8804 3.8955 45 1 4.9982 -8.5047 3.6473 46 1 5.5759 -8.6967 1.9351 47 1 7.2924 -7.7566 4.0804 48 1 7.5351 -7.2795 2.3428 49 1 7.0219 -5.1572 1.8245 50 1 6.0183 -4.1058 2.8520 51 1 8.4740 -3.0245 2.6033 52 1 10.8577 -0.6889 2.5432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230838596.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:49 Heat of formation + Delta-G solvation = -109.784835 kcal Electronic energy + Delta-G solvation = -30873.438006 eV Core-core repulsion = 26680.289209 eV Total energy + Delta-G solvation = -4193.148797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.60751 -40.65056 -39.51844 -39.20309 -36.46256 -35.94508 -34.34414 -33.34849 -32.38153 -31.74084 -29.73875 -28.11989 -27.50562 -27.42853 -25.39290 -25.29185 -23.53490 -22.27594 -21.12444 -20.69622 -19.97169 -19.92569 -18.43764 -17.80172 -17.55245 -17.27406 -17.13219 -16.82041 -16.62999 -16.44427 -15.91046 -15.74137 -15.60623 -15.35156 -14.92469 -14.63864 -14.41800 -14.12279 -13.95103 -13.81724 -13.61314 -13.53228 -13.42712 -13.24123 -13.09564 -12.95617 -12.81322 -12.76064 -12.55824 -12.46190 -12.38015 -12.30247 -12.14754 -12.10905 -11.90192 -11.68275 -11.61100 -11.49658 -10.89673 -10.55971 -10.39870 -10.04102 -9.87041 -9.48447 -8.47734 -5.97130 1.38313 1.40361 1.51447 1.54638 1.88659 2.01196 2.27135 2.69781 2.82636 3.17740 3.28646 3.58232 3.65601 3.79904 3.89534 3.96188 4.10191 4.14347 4.16255 4.20223 4.23405 4.29006 4.32661 4.35843 4.44074 4.44550 4.47552 4.63721 4.67718 4.71997 4.76156 4.80119 4.85070 4.86528 4.91316 4.91731 4.97267 4.97995 5.07610 5.25959 5.27917 5.33143 5.37516 5.40274 5.53026 5.89269 6.05879 6.25149 6.37443 6.56987 7.09984 7.10281 7.52447 8.07528 8.69485 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007497 B = 0.003271 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3734.154274 B = 8558.724727 C =11694.030458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 C -0.149 4.149 4 O -0.399 6.399 5 C 0.084 3.916 6 C -0.135 4.135 7 C 0.516 3.484 8 O -0.579 6.579 9 N -0.602 5.602 10 C 0.082 3.918 11 C 0.140 3.860 12 C 0.012 3.988 13 H 0.067 0.933 14 C -0.114 4.114 15 C 0.008 3.992 16 N -0.453 5.453 17 C 0.031 3.969 18 C 0.445 3.555 19 O -0.612 6.612 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.270 1.270 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.056 0.944 50 H 0.093 0.907 51 H 0.393 0.607 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.300 -1.928 -4.660 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.014 3.986 3 C -0.206 4.206 4 O -0.319 6.319 5 C 0.007 3.993 6 C -0.175 4.175 7 C 0.305 3.695 8 O -0.460 6.460 9 N -0.333 5.333 10 C -0.061 4.061 11 C 0.017 3.983 12 C -0.099 4.099 13 H 0.085 0.915 14 C -0.152 4.152 15 C -0.121 4.121 16 N -0.177 5.177 17 C -0.101 4.101 18 C 0.232 3.768 19 O -0.498 6.498 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.195 1.195 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.140 0.860 39 H 0.120 0.880 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.127 0.873 46 H 0.110 0.890 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.111 0.889 51 H 0.226 0.774 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.283 -2.158 -3.794 20.747 hybrid contribution 1.383 0.506 -1.081 1.827 sum -18.900 -1.652 -4.875 19.588 Atomic orbital electron populations 1.22262 0.94787 1.02364 1.03335 1.22306 0.94648 0.94129 0.87535 1.21886 1.01403 0.93928 1.03379 1.87843 1.87004 1.20065 1.37027 1.22042 0.99811 0.81128 0.96318 1.21497 1.05157 0.90734 1.00087 1.20692 0.76061 0.89415 0.83340 1.90666 1.53437 1.75065 1.26843 1.47796 1.64236 1.08852 1.12407 1.21938 1.00961 0.99621 0.83534 1.21493 0.93600 0.80141 1.03096 1.23977 0.94230 0.96319 0.95357 0.91501 1.23315 0.94128 0.94695 1.03041 1.23734 0.96352 0.91585 1.00439 1.68462 1.07360 1.00247 1.41582 1.22219 0.94534 0.97582 0.95728 1.20551 0.86120 0.82589 0.87534 1.90486 1.74619 1.52822 1.31828 1.41957 1.24553 1.26692 1.27957 1.19614 1.03814 1.12494 1.10252 0.90181 1.26051 1.01827 0.95343 0.98010 1.69676 1.40823 1.18522 1.27176 0.84993 0.77331 0.77895 0.78151 1.19711 1.19534 1.19519 0.92847 0.91876 0.89937 0.92119 0.92889 0.89262 0.91892 0.93911 0.92618 0.85970 0.87998 0.93971 0.89170 0.89513 0.89285 0.87896 0.87264 0.88983 0.90737 0.92770 0.92643 0.88884 0.77376 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.53 71.98 0.69 -1.82 16 2 C 0.07 1.31 3.34 30.59 0.10 1.41 16 3 C -0.15 -2.40 9.56 71.98 0.69 -1.71 16 4 O -0.40 -9.26 9.99 -148.98 -1.49 -10.75 16 5 C 0.08 1.92 5.04 71.98 0.36 2.28 16 6 C -0.14 -2.86 4.62 29.85 0.14 -2.72 16 7 C 0.52 12.87 7.67 87.66 0.67 13.55 16 8 O -0.58 -17.92 15.56 -3.00 -0.05 -17.97 16 9 N -0.60 -13.44 2.82 -846.79 -2.39 -15.83 16 10 C 0.08 1.65 9.94 127.77 1.27 2.91 16 11 C 0.14 2.92 5.59 86.38 0.48 3.41 16 12 C 0.01 0.28 3.57 45.02 0.16 0.44 16 13 H 0.07 1.83 7.79 -2.38 -0.02 1.82 16 14 C -0.11 -2.37 7.83 31.24 0.24 -2.12 16 15 C 0.01 0.24 6.78 86.34 0.59 0.82 16 16 N -0.45 -14.36 5.35 -887.37 -4.75 -19.11 16 17 C 0.03 1.15 5.04 85.56 0.43 1.58 16 18 C 0.44 21.50 7.59 87.66 0.67 22.16 16 19 O -0.61 -33.61 15.13 -3.08 -0.05 -33.66 16 20 N -0.57 -30.08 5.29 -306.99 -1.62 -31.70 16 21 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 24 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 25 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 29 H 0.05 0.82 7.87 -2.39 -0.02 0.80 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.10 7.79 -2.38 -0.02 1.08 16 33 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.04 1.08 8.04 -2.39 -0.02 1.06 16 37 H 0.06 1.24 7.83 -2.39 -0.02 1.22 16 38 H 0.12 2.03 7.40 -2.39 -0.02 2.01 16 39 H 0.10 2.23 8.11 -2.39 -0.02 2.21 16 40 H 0.04 1.11 6.76 -2.38 -0.02 1.09 16 41 H 0.09 1.37 6.44 -2.39 -0.02 1.35 16 42 H 0.09 1.54 7.89 -2.39 -0.02 1.52 16 43 H 0.09 1.85 7.42 -2.39 -0.02 1.84 16 44 H 0.10 1.78 7.66 -2.39 -0.02 1.76 16 45 H 0.11 1.91 7.94 -2.39 -0.02 1.89 16 46 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.07 2.55 8.10 -2.39 -0.02 2.53 16 48 H 0.05 1.73 7.79 -2.39 -0.02 1.71 16 49 H 0.06 1.97 7.69 -2.39 -0.02 1.95 16 50 H 0.09 3.24 7.07 -2.38 -0.02 3.22 16 51 H 0.39 19.93 7.90 -92.71 -0.73 19.20 16 52 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -71.32 421.16 -0.09 -71.41 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: 0.17 Total: 40.73 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 7.77 Total: 21.82 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -8.48 Total: -116.70 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -1.58 Total: -62.38 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -71.32 -0.09 -71.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230838596.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.376 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds