Wall clock time and date at job start Wed Apr 1 2020 00:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46817 * 60.00076 * 4 3 2 6 6 C 1.53006 * 109.47127 * 300.00438 * 4 3 2 7 7 C 1.50701 * 109.47212 * 180.02562 * 4 3 2 8 8 O 1.21280 * 119.99781 * 359.97438 * 7 4 3 9 9 N 1.34771 * 119.99622 * 180.02562 * 7 4 3 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 4 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09003 * 112.84890 * 316.19493 * 11 10 9 13 13 C 1.53787 * 113.61418 * 87.49925 * 11 10 9 14 14 C 1.53789 * 87.07916 * 139.98375 * 13 11 10 15 15 H 1.09000 * 113.61295 * 89.11693 * 14 13 11 16 16 N 1.46893 * 113.68757 * 220.01096 * 14 13 11 17 17 C 1.46907 * 110.99947 * 252.53315 * 16 14 13 18 18 C 1.50699 * 109.47271 * 179.97438 * 17 16 14 19 19 O 1.21287 * 119.99788 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00079 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00441 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99510 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00388 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99945 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99890 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47264 * 60.00072 * 25 23 21 27 27 H 1.48503 * 109.46993 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47175 * 299.99437 * 25 23 21 29 29 C 1.53780 * 113.61900 * 184.99939 * 11 10 9 30 30 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 31 31 H 1.09006 * 109.47287 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47141 * 300.00115 * 1 2 3 33 33 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 34 34 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 35 35 H 1.09004 * 109.46733 * 180.02562 * 5 4 3 36 36 H 1.08996 * 109.47407 * 299.99780 * 5 4 3 37 37 H 1.08992 * 109.47063 * 60.00177 * 5 4 3 38 38 H 1.08998 * 109.46505 * 300.00129 * 6 4 3 39 39 H 1.08996 * 109.46884 * 59.99248 * 6 4 3 40 40 H 1.08996 * 109.47129 * 180.02562 * 6 4 3 41 41 H 0.96996 * 120.00772 * 359.97438 * 9 7 4 42 42 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 43 43 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 44 44 H 1.08998 * 113.61477 * 254.53206 * 13 11 10 45 45 H 1.08992 * 113.61461 * 25.43734 * 13 11 10 46 46 H 1.00902 * 111.00656 * 16.48565 * 16 14 13 47 47 H 1.08997 * 109.47173 * 300.00710 * 17 16 14 48 48 H 1.09002 * 109.46486 * 59.99919 * 17 16 14 49 49 H 0.97003 * 119.99585 * 0.02562 * 20 18 17 50 50 H 0.96997 * 119.99813 * 179.97438 * 24 23 21 51 51 H 1.09004 * 113.61169 * 334.56803 * 29 11 10 52 52 H 1.09001 * 113.61588 * 105.38140 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9864 0.4256 -1.2503 6 6 3.9875 0.4250 1.2483 7 6 4.1485 2.5613 0.0000 8 8 3.4356 3.5425 0.0004 9 7 5.4888 2.7021 -0.0009 10 6 6.0847 4.0405 -0.0009 11 6 7.6099 3.9197 -0.0014 12 1 7.9748 3.1635 0.6936 13 6 8.2187 3.8100 -1.4094 14 6 9.3418 4.7345 -0.9102 15 1 10.1811 4.2006 -0.4646 16 7 9.7629 5.7375 -1.8973 17 6 11.0841 5.4099 -2.4499 18 6 11.4815 6.4583 -3.4568 19 8 10.7376 7.3873 -3.6907 20 7 12.6639 6.3643 -4.0966 21 6 13.0258 7.3183 -5.0122 22 1 12.3630 8.1451 -5.2211 23 6 14.2446 7.2210 -5.6723 24 7 15.0508 6.2148 -5.4185 25 14 14.7372 8.5206 -6.9204 26 1 14.7935 9.8480 -6.2570 27 1 16.0730 8.1898 -7.4786 28 1 13.7371 8.5575 -8.0176 29 6 8.3350 5.2702 0.1214 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 5.0730 0.3391 -1.2505 36 1 3.5431 -0.5702 -1.2503 37 1 3.6644 0.9667 -2.1399 38 1 3.6661 0.9657 2.1384 39 1 3.5440 -0.5707 1.2482 40 1 5.0740 0.3393 1.2480 41 1 6.0590 1.9174 -0.0016 42 1 5.7625 4.5817 -0.8905 43 1 5.7637 4.5811 0.8895 44 1 8.5593 2.8056 -1.6608 45 1 7.6003 4.2557 -2.1884 46 1 9.0774 5.8326 -2.6315 47 1 11.8181 5.3822 -1.6446 48 1 11.0426 4.4358 -2.9372 49 1 13.2590 5.6215 -3.9092 50 1 15.9015 6.1467 -5.8795 51 1 7.7482 6.1152 -0.2392 52 1 8.7681 5.4453 1.1062 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264396764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:52 Heat of formation + Delta-G solvation = -136.822726 kcal Electronic energy + Delta-G solvation = -29096.129398 eV Core-core repulsion = 24901.808150 eV Total energy + Delta-G solvation = -4194.321248 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.44927 -40.49250 -39.78665 -38.84540 -36.25199 -35.97910 -35.69766 -34.31103 -33.23003 -29.46292 -28.36102 -28.26929 -27.70908 -26.55444 -26.52924 -25.79610 -23.67390 -22.39775 -21.31711 -20.83289 -20.08327 -19.79202 -18.19184 -17.78102 -17.39308 -16.95880 -16.87699 -16.79370 -16.50875 -16.36453 -16.12592 -15.88613 -15.67833 -15.39461 -15.04214 -14.83774 -14.47474 -14.23800 -14.19662 -13.82891 -13.54250 -13.50674 -13.33239 -13.31021 -13.09336 -12.98294 -12.83027 -12.78699 -12.62579 -12.43503 -12.41149 -12.13178 -12.06709 -11.86060 -11.74679 -11.51229 -11.46800 -11.27341 -10.74154 -10.68310 -10.32177 -10.10935 -10.01368 -9.18912 -8.46488 -5.95278 1.39860 1.41854 1.52625 1.54728 1.98538 2.06021 2.29665 2.89140 2.99258 3.20870 3.47602 3.54224 3.63034 3.66998 3.77004 3.87366 3.95724 4.07296 4.14037 4.29538 4.36457 4.41647 4.44816 4.46516 4.53485 4.58959 4.59155 4.61638 4.72736 4.75646 4.80993 4.85392 4.88289 4.89845 4.90371 4.95239 4.97585 5.15104 5.24033 5.29581 5.31215 5.37473 5.40858 5.51456 5.95133 6.11365 6.22098 6.44221 6.49379 6.60944 7.12915 7.17647 7.56765 8.12567 8.70563 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.001452 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.517108 B =19273.183980 C =19548.742204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.087 3.913 4 C -0.077 4.077 5 C -0.133 4.133 6 C -0.132 4.132 7 C 0.521 3.479 8 O -0.588 6.588 9 N -0.707 5.707 10 C 0.133 3.867 11 C -0.100 4.100 12 H 0.124 0.876 13 C -0.158 4.158 14 C 0.061 3.939 15 H 0.112 0.888 16 N -0.676 5.676 17 C 0.067 3.933 18 C 0.434 3.566 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.272 1.272 29 C -0.119 4.119 30 H 0.043 0.957 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.416 0.584 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.343 0.657 47 H 0.105 0.895 48 H 0.068 0.932 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.071 0.929 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.851 -19.594 15.193 32.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.009 3.991 4 C -0.080 4.080 5 C -0.191 4.191 6 C -0.189 4.189 7 C 0.308 3.692 8 O -0.468 6.468 9 N -0.359 5.359 10 C 0.010 3.990 11 C -0.119 4.119 12 H 0.142 0.858 13 C -0.197 4.197 14 C -0.049 4.049 15 H 0.130 0.870 16 N -0.307 5.307 17 C -0.066 4.066 18 C 0.222 3.778 19 O -0.513 6.513 20 N -0.209 5.209 21 C -0.467 4.467 22 H 0.095 0.905 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.193 1.193 28 H -0.198 1.198 29 C -0.158 4.158 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.254 0.746 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.163 0.837 47 H 0.123 0.877 48 H 0.086 0.914 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.090 0.910 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.246 -18.052 15.420 31.860 hybrid contribution 0.290 -0.058 -1.317 1.350 sum -20.956 -18.110 14.103 31.081 Atomic orbital electron populations 1.22926 0.79579 1.04023 1.00527 1.87767 1.21110 1.27148 1.95521 1.22132 0.92066 0.84412 1.00447 1.20709 0.94383 0.92180 1.00727 1.21798 1.02532 1.00788 0.93958 1.21793 1.02576 1.00730 0.93816 1.20765 0.82763 0.90942 0.74706 1.90702 1.62185 1.42239 1.51678 1.45838 1.06045 1.09954 1.74085 1.21304 0.92617 0.83762 1.01363 1.22545 0.91825 0.99460 0.98104 0.85790 1.23754 0.98007 1.01214 0.96774 1.23208 0.96516 0.91334 0.93818 0.86966 1.60035 1.02964 1.48316 1.19352 1.21574 0.93533 0.94946 0.96525 1.21011 0.82509 0.89088 0.85183 1.90490 1.53939 1.37735 1.69150 1.41924 1.17233 1.24924 1.36868 1.19634 1.03193 1.05648 1.18220 0.90484 1.26007 0.95212 0.99754 1.00065 1.69658 1.11293 1.31263 1.43740 0.85010 0.77673 0.77899 0.77878 1.19828 1.19345 1.19760 1.23044 0.96812 0.96393 0.99576 0.93820 0.87737 0.93581 0.93475 0.93880 0.90104 0.89979 0.93332 0.92857 0.90052 0.89980 0.74630 0.93095 0.91932 0.89730 0.91019 0.83746 0.87741 0.91436 0.76910 0.91264 0.91006 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.51 16 2 O -0.40 -6.02 9.35 -148.98 -1.39 -7.41 16 3 C 0.09 1.47 4.09 71.98 0.29 1.76 16 4 C -0.08 -1.07 0.70 -52.93 -0.04 -1.11 16 5 C -0.13 -1.48 8.23 71.98 0.59 -0.89 16 6 C -0.13 -1.28 8.22 71.98 0.59 -0.68 16 7 C 0.52 9.84 6.48 87.66 0.57 10.41 16 8 O -0.59 -16.56 15.98 -3.03 -0.05 -16.60 16 9 N -0.71 -9.57 5.34 -463.06 -2.47 -12.04 16 10 C 0.13 2.17 5.51 86.38 0.48 2.64 16 11 C -0.10 -1.28 3.75 -10.27 -0.04 -1.32 16 12 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 13 C -0.16 -2.52 7.25 31.13 0.23 -2.29 16 14 C 0.06 1.23 4.18 45.45 0.19 1.42 16 15 H 0.11 1.93 7.87 -2.39 -0.02 1.91 16 16 N -0.68 -20.63 6.24 -492.84 -3.08 -23.71 16 17 C 0.07 2.21 6.01 85.56 0.51 2.72 16 18 C 0.43 20.72 7.82 87.66 0.69 21.41 16 19 O -0.63 -35.22 15.78 -3.05 -0.05 -35.27 16 20 N -0.57 -29.38 5.29 -306.99 -1.62 -31.00 16 21 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 24 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 25 Si 0.99 43.00 29.55 68.60 2.03 45.02 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 29 C -0.12 -2.15 7.44 31.12 0.23 -1.91 16 30 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.05 0.43 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.04 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.08 0.56 7.57 -2.39 -0.02 0.55 16 36 H 0.08 0.87 7.68 -2.39 -0.02 0.85 16 37 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.08 0.77 7.68 -2.39 -0.02 0.75 16 40 H 0.08 0.44 7.56 -2.39 -0.02 0.42 16 41 H 0.42 3.02 7.31 -92.71 -0.68 2.34 16 42 H 0.05 1.06 7.84 -2.39 -0.02 1.04 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.39 7.58 -2.39 -0.02 1.37 16 46 H 0.34 11.33 7.90 -89.69 -0.71 10.63 16 47 H 0.10 3.10 8.13 -2.39 -0.02 3.08 16 48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 50 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 51 H 0.07 1.58 8.10 -2.38 -0.02 1.56 16 52 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -74.87 424.00 -0.72 -75.59 By element: Atomic # 1 Polarization: 40.53 SS G_CDS: -1.19 Total: 39.34 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.82 Total: 15.12 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -6.89 Total: -115.80 kcal Atomic # 8 Polarization: -57.79 SS G_CDS: -1.49 Total: -59.28 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -74.87 -0.72 -75.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264396764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.233 kcal (2) G-P(sol) polarization free energy of solvation -74.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds