Wall clock time and date at job start Wed Apr 1 2020 01:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00038 * 2 1 4 4 C 1.50702 * 109.47098 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99863 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99908 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99767 * 359.97438 * 6 4 3 8 8 C 1.46499 * 119.99860 * 180.02562 * 6 4 3 9 9 C 1.50703 * 109.47086 * 270.00029 * 8 6 4 10 10 O 1.21283 * 119.99692 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99577 * 180.02562 * 9 8 6 12 12 C 1.47203 * 120.81968 * 5.28653 * 11 9 8 13 13 C 1.53189 * 108.85572 * 126.33701 * 12 11 9 14 14 C 1.53038 * 109.31601 * 54.65112 * 13 12 11 15 15 H 1.08996 * 109.44746 * 58.65019 * 14 13 12 16 16 C 1.52996 * 109.45994 * 178.61186 * 14 13 12 17 17 C 1.53040 * 109.53556 * 298.63323 * 14 13 12 18 18 C 1.46927 * 120.62565 * 185.13923 * 11 9 8 19 19 H 1.09002 * 109.58778 * 113.82284 * 18 11 9 20 20 C 1.53000 * 109.58815 * 353.53801 * 18 11 9 21 21 N 1.46507 * 109.47090 * 179.47068 * 20 18 11 22 22 C 1.36936 * 119.99661 * 174.61970 * 21 20 18 23 23 H 1.07995 * 120.00490 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99734 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00143 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99952 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47245 * 59.99703 * 26 24 22 28 28 H 1.48501 * 109.47237 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47125 * 299.99556 * 26 24 22 30 30 H 1.08998 * 109.47486 * 300.00702 * 1 2 3 31 31 H 1.09007 * 109.46833 * 60.00591 * 1 2 3 32 32 H 1.08998 * 109.47536 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46822 * 59.99630 * 3 2 1 34 34 H 1.08999 * 109.47064 * 299.99754 * 3 2 1 35 35 H 1.09002 * 109.47128 * 269.99756 * 7 6 4 36 36 H 1.09001 * 109.47400 * 30.00452 * 7 6 4 37 37 H 1.09004 * 109.46469 * 150.00156 * 7 6 4 38 38 H 1.08998 * 109.47532 * 149.99697 * 8 6 4 39 39 H 1.09002 * 109.46752 * 29.99674 * 8 6 4 40 40 H 1.08994 * 109.53139 * 6.52839 * 12 11 9 41 41 H 1.09001 * 109.55529 * 246.15633 * 12 11 9 42 42 H 1.08998 * 109.49621 * 294.69270 * 13 12 11 43 43 H 1.09000 * 109.51903 * 174.61857 * 13 12 11 44 44 H 1.09004 * 109.47206 * 180.02562 * 16 14 13 45 45 H 1.09000 * 109.47589 * 300.07212 * 16 14 13 46 46 H 1.09009 * 109.46787 * 60.06904 * 16 14 13 47 47 H 1.09001 * 109.50235 * 301.41228 * 17 14 13 48 48 H 1.08999 * 109.52452 * 181.33070 * 17 14 13 49 49 H 1.08997 * 109.47577 * 299.47275 * 20 18 11 50 50 H 1.08999 * 109.47107 * 59.47493 * 20 18 11 51 51 H 0.96997 * 120.00327 * 354.61880 * 21 20 18 52 52 H 0.96997 * 119.99971 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2968 0.0013 7 6 3.6464 3.6194 0.0008 8 6 5.7369 2.1811 0.0013 9 6 6.2375 2.1407 1.4222 10 8 5.4518 2.2029 2.3440 11 7 7.5585 2.0364 1.6684 12 6 8.5361 2.0770 0.5687 13 6 9.5767 3.1598 0.8710 14 6 10.1921 2.9002 2.2479 15 1 10.6512 1.9117 2.2597 16 6 11.2566 3.9600 2.5385 17 6 9.0998 2.9680 3.3177 18 6 8.0538 1.8829 3.0431 19 1 8.5085 0.8991 3.1600 20 6 6.8912 2.0307 4.0267 21 7 7.3857 1.8646 5.3958 22 6 6.5435 2.0646 6.4569 23 1 5.5150 2.3452 6.2846 24 6 7.0121 1.9077 7.7540 25 7 8.2658 1.5663 7.9641 26 14 5.8635 2.1813 9.2016 27 1 4.7235 1.2336 9.1149 28 1 6.6018 1.9521 10.4695 29 1 5.3520 3.5751 9.1711 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.4910 3.9474 -1.0270 36 1 2.6863 3.5647 0.5139 37 1 4.2933 4.3301 0.5151 38 1 6.1695 3.0398 -0.5121 39 1 6.0288 1.2654 -0.5129 40 1 8.0250 2.3118 -0.3649 41 1 9.0301 1.1090 0.4838 42 1 9.0958 4.1380 0.8659 43 1 10.3590 3.1351 0.1123 44 1 11.6954 3.7750 3.5190 45 1 12.0347 3.9120 1.7766 46 1 10.7976 4.9487 2.5272 47 1 8.6233 3.9480 3.2897 48 1 9.5421 2.8065 4.3007 49 1 6.4471 3.0201 3.9184 50 1 6.1392 1.2700 3.8173 51 1 8.3095 1.6129 5.5506 52 1 8.5932 1.4563 8.8705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264552105.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:23 Heat of formation + Delta-G solvation = -76.793468 kcal Electronic energy + Delta-G solvation = -31647.573149 eV Core-core repulsion = 27455.854965 eV Total energy + Delta-G solvation = -4191.718184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69491 -39.72795 -37.84977 -37.28897 -35.58108 -34.65002 -33.83281 -32.06664 -30.27057 -29.72778 -28.57636 -27.69513 -26.63844 -25.64030 -25.25468 -23.43544 -22.90682 -21.23702 -20.32550 -19.76250 -18.82275 -17.58662 -17.19666 -16.90865 -16.83798 -16.34484 -15.96970 -15.39318 -15.30009 -14.90128 -14.69011 -14.40124 -14.28094 -14.01332 -13.54728 -13.45927 -13.32347 -13.15248 -13.11896 -13.02760 -12.75407 -12.67750 -12.42132 -12.33699 -11.88291 -11.80179 -11.74116 -11.65582 -11.44827 -10.96995 -10.85616 -10.73225 -10.62760 -10.36901 -10.22436 -10.04200 -9.96936 -9.89127 -9.60918 -9.27310 -8.77188 -8.51352 -8.25919 -6.71030 -5.62052 -2.87945 2.31915 2.55769 2.82117 3.17147 3.53904 3.57098 3.59497 3.68480 4.36275 4.51707 4.65186 4.73524 4.75014 4.80578 4.82473 4.90597 4.92256 4.95773 5.04511 5.11519 5.15559 5.20016 5.26512 5.29118 5.39651 5.41502 5.45355 5.62151 5.64365 5.71692 5.75048 5.80876 5.89645 5.94861 6.05791 6.11378 6.22072 6.30590 6.32324 6.38096 6.62957 6.70757 6.82663 7.10759 7.17543 7.35462 7.61355 7.87390 8.02258 8.42417 8.59863 9.68373 10.28138 10.63299 11.61598 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007566 B = 0.003836 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3699.789813 B = 7298.445660 C =10385.998408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.521 3.479 5 O -0.513 6.513 6 N -0.600 5.600 7 C 0.080 3.920 8 C 0.099 3.901 9 C 0.490 3.510 10 O -0.505 6.505 11 N -0.607 5.607 12 C 0.108 3.892 13 C -0.128 4.128 14 C -0.095 4.095 15 H 0.070 0.930 16 C -0.145 4.145 17 C -0.118 4.118 18 C 0.139 3.861 19 H 0.069 0.931 20 C 0.167 3.833 21 N -0.738 5.738 22 C -0.223 4.223 23 H 0.068 0.932 24 C -0.019 4.019 25 N -0.939 5.939 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.288 1.288 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.086 0.914 49 H 0.034 0.966 50 H 0.042 0.958 51 H 0.378 0.622 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 6.211 -24.923 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.032 4.032 4 C 0.308 3.692 5 O -0.386 6.386 6 N -0.336 5.336 7 C -0.063 4.063 8 C -0.027 4.027 9 C 0.276 3.724 10 O -0.379 6.379 11 N -0.342 5.342 12 C -0.015 4.015 13 C -0.166 4.166 14 C -0.113 4.113 15 H 0.089 0.911 16 C -0.202 4.202 17 C -0.156 4.156 18 C 0.037 3.963 19 H 0.087 0.913 20 C 0.040 3.960 21 N -0.384 5.384 22 C -0.355 4.355 23 H 0.086 0.914 24 C -0.214 4.214 25 N -0.589 5.589 26 Si 0.737 3.263 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.215 1.215 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.104 0.896 49 H 0.052 0.948 50 H 0.059 0.941 51 H 0.212 0.788 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.929 5.505 -24.343 25.439 hybrid contribution -0.362 0.463 0.955 1.121 sum -5.291 5.968 -23.388 24.710 Atomic orbital electron populations 1.22838 0.80344 1.03367 1.00078 1.88025 1.19803 1.25206 1.95399 1.22243 0.91444 0.87005 1.02514 1.20210 0.88793 0.84031 0.76157 1.90738 1.74397 1.26151 1.47363 1.47292 1.05227 1.06637 1.74403 1.21854 0.99288 0.83652 1.01509 1.21391 0.80831 1.05086 0.95441 1.21024 0.82369 0.77379 0.91675 1.90846 1.55312 1.47473 1.44255 1.48220 1.05187 1.72991 1.07843 1.21767 0.90813 0.99657 0.89265 1.21975 0.97985 0.98926 0.97713 1.21162 0.96037 0.99602 0.94524 0.91144 1.21800 0.98072 0.98740 1.01576 1.21985 0.95271 0.99172 0.99204 1.21600 0.96347 0.98257 0.80122 0.91292 1.21232 0.91656 0.99900 0.83174 1.42572 1.11836 1.83932 1.00013 1.19181 0.93114 1.37800 0.85405 0.91379 1.24685 0.96345 1.03208 0.97147 1.69647 1.13967 1.55374 1.19931 0.86277 0.79863 0.77844 0.82322 1.21411 1.21799 1.21465 0.93648 0.93933 0.89059 0.89838 0.90337 0.92208 0.90824 0.90470 0.87705 0.87078 0.90279 0.91181 0.91560 0.90958 0.92278 0.93104 0.92876 0.91805 0.89588 0.94849 0.94084 0.78839 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.37 -4.78 10.24 -55.14 -0.56 -5.35 16 3 C 0.05 0.51 4.97 36.01 0.18 0.69 16 4 C 0.52 7.37 7.75 -10.98 -0.09 7.28 16 5 O -0.51 -9.62 16.08 -14.35 -0.23 -9.85 16 6 N -0.60 -6.88 2.36 -182.95 -0.43 -7.31 16 7 C 0.08 0.59 10.24 59.85 0.61 1.20 16 8 C 0.10 1.10 4.30 -5.19 -0.02 1.08 16 9 C 0.49 7.69 7.68 -10.98 -0.08 7.61 16 10 O -0.51 -10.28 11.83 5.55 0.07 -10.21 16 11 N -0.61 -8.80 2.98 -165.00 -0.49 -9.29 16 12 C 0.11 1.06 6.34 -3.56 -0.02 1.03 16 13 C -0.13 -1.19 5.36 -26.61 -0.14 -1.33 16 14 C -0.09 -1.12 2.68 -90.58 -0.24 -1.37 16 15 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 16 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 17 C -0.12 -1.90 4.41 -26.61 -0.12 -2.02 16 18 C 0.14 2.51 3.02 -67.60 -0.20 2.30 16 19 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 20 C 0.17 3.90 4.10 -4.04 -0.02 3.88 16 21 N -0.74 -20.19 5.28 -59.91 -0.32 -20.50 16 22 C -0.22 -6.76 9.99 -15.06 -0.15 -6.91 16 23 H 0.07 2.06 7.83 -52.49 -0.41 1.64 16 24 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 16 25 N -0.94 -29.53 13.06 55.49 0.72 -28.80 16 26 Si 0.91 23.73 29.55 -169.99 -5.02 18.70 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.78 7.40 -51.93 -0.38 0.40 16 34 H 0.08 0.55 8.11 -51.93 -0.42 0.12 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 37 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.11 0.75 7.41 -51.93 -0.38 0.36 16 39 H 0.11 1.25 7.40 -51.93 -0.38 0.86 16 40 H 0.08 0.54 5.99 -51.93 -0.31 0.23 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 48 H 0.09 1.60 7.22 -51.93 -0.37 1.23 16 49 H 0.03 0.83 7.07 -51.93 -0.37 0.47 16 50 H 0.04 1.09 6.41 -51.93 -0.33 0.76 16 51 H 0.38 10.55 6.82 -40.82 -0.28 10.27 16 52 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 409.58 15.07 6.17 6.17 Total: -1.00 -39.92 409.58 -8.07 -47.99 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -9.03 Total: 5.53 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 1.06 Total: 12.92 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.52 Total: -65.91 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.73 Total: -25.41 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.02 Total: 18.70 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -39.92 -8.07 -47.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264552105.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.802 kcal (2) G-P(sol) polarization free energy of solvation -39.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds