Wall clock time and date at job start Wed Apr 1 2020 01:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00038 * 2 1 4 4 C 1.50702 * 109.47098 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99863 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99908 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99767 * 359.97438 * 6 4 3 8 8 C 1.46499 * 119.99860 * 180.02562 * 6 4 3 9 9 C 1.50703 * 109.47086 * 270.00029 * 8 6 4 10 10 O 1.21283 * 119.99692 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99577 * 180.02562 * 9 8 6 12 12 C 1.47203 * 120.81968 * 5.28653 * 11 9 8 13 13 C 1.53189 * 108.85572 * 126.33701 * 12 11 9 14 14 C 1.53038 * 109.31601 * 54.65112 * 13 12 11 15 15 H 1.08996 * 109.44746 * 58.65019 * 14 13 12 16 16 C 1.52996 * 109.45994 * 178.61186 * 14 13 12 17 17 C 1.53040 * 109.53556 * 298.63323 * 14 13 12 18 18 C 1.46927 * 120.62565 * 185.13923 * 11 9 8 19 19 H 1.09002 * 109.58778 * 113.82284 * 18 11 9 20 20 C 1.53000 * 109.58815 * 353.53801 * 18 11 9 21 21 N 1.46507 * 109.47090 * 179.47068 * 20 18 11 22 22 C 1.36936 * 119.99661 * 174.61970 * 21 20 18 23 23 H 1.07995 * 120.00490 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99734 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00143 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99952 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47245 * 59.99703 * 26 24 22 28 28 H 1.48501 * 109.47237 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47125 * 299.99556 * 26 24 22 30 30 H 1.08998 * 109.47486 * 300.00702 * 1 2 3 31 31 H 1.09007 * 109.46833 * 60.00591 * 1 2 3 32 32 H 1.08998 * 109.47536 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46822 * 59.99630 * 3 2 1 34 34 H 1.08999 * 109.47064 * 299.99754 * 3 2 1 35 35 H 1.09002 * 109.47128 * 269.99756 * 7 6 4 36 36 H 1.09001 * 109.47400 * 30.00452 * 7 6 4 37 37 H 1.09004 * 109.46469 * 150.00156 * 7 6 4 38 38 H 1.08998 * 109.47532 * 149.99697 * 8 6 4 39 39 H 1.09002 * 109.46752 * 29.99674 * 8 6 4 40 40 H 1.08994 * 109.53139 * 6.52839 * 12 11 9 41 41 H 1.09001 * 109.55529 * 246.15633 * 12 11 9 42 42 H 1.08998 * 109.49621 * 294.69270 * 13 12 11 43 43 H 1.09000 * 109.51903 * 174.61857 * 13 12 11 44 44 H 1.09004 * 109.47206 * 180.02562 * 16 14 13 45 45 H 1.09000 * 109.47589 * 300.07212 * 16 14 13 46 46 H 1.09009 * 109.46787 * 60.06904 * 16 14 13 47 47 H 1.09001 * 109.50235 * 301.41228 * 17 14 13 48 48 H 1.08999 * 109.52452 * 181.33070 * 17 14 13 49 49 H 1.08997 * 109.47577 * 299.47275 * 20 18 11 50 50 H 1.08999 * 109.47107 * 59.47493 * 20 18 11 51 51 H 0.96997 * 120.00327 * 354.61880 * 21 20 18 52 52 H 0.96997 * 119.99971 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2968 0.0013 7 6 3.6464 3.6194 0.0008 8 6 5.7369 2.1811 0.0013 9 6 6.2375 2.1407 1.4222 10 8 5.4518 2.2029 2.3440 11 7 7.5585 2.0364 1.6684 12 6 8.5361 2.0770 0.5687 13 6 9.5767 3.1598 0.8710 14 6 10.1921 2.9002 2.2479 15 1 10.6512 1.9117 2.2597 16 6 11.2566 3.9600 2.5385 17 6 9.0998 2.9680 3.3177 18 6 8.0538 1.8829 3.0431 19 1 8.5085 0.8991 3.1600 20 6 6.8912 2.0307 4.0267 21 7 7.3857 1.8646 5.3958 22 6 6.5435 2.0646 6.4569 23 1 5.5150 2.3452 6.2846 24 6 7.0121 1.9077 7.7540 25 7 8.2658 1.5663 7.9641 26 14 5.8635 2.1813 9.2016 27 1 4.7235 1.2336 9.1149 28 1 6.6018 1.9521 10.4695 29 1 5.3520 3.5751 9.1711 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.4910 3.9474 -1.0270 36 1 2.6863 3.5647 0.5139 37 1 4.2933 4.3301 0.5151 38 1 6.1695 3.0398 -0.5121 39 1 6.0288 1.2654 -0.5129 40 1 8.0250 2.3118 -0.3649 41 1 9.0301 1.1090 0.4838 42 1 9.0958 4.1380 0.8659 43 1 10.3590 3.1351 0.1123 44 1 11.6954 3.7750 3.5190 45 1 12.0347 3.9120 1.7766 46 1 10.7976 4.9487 2.5272 47 1 8.6233 3.9480 3.2897 48 1 9.5421 2.8065 4.3007 49 1 6.4471 3.0201 3.9184 50 1 6.1392 1.2700 3.8173 51 1 8.3095 1.6129 5.5506 52 1 8.5932 1.4563 8.8705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264552105.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:19 Heat of formation + Delta-G solvation = -106.174355 kcal Electronic energy + Delta-G solvation = -31648.847200 eV Core-core repulsion = 27455.854965 eV Total energy + Delta-G solvation = -4192.992235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.84523 -40.79905 -38.85138 -38.31999 -36.80965 -36.39836 -34.95788 -33.94132 -31.67700 -31.00711 -29.50958 -28.58994 -27.38560 -27.25348 -26.32538 -24.90264 -24.25746 -22.74973 -21.50562 -20.78551 -19.95690 -19.16290 -18.48615 -18.15623 -17.79592 -17.25945 -17.10150 -16.60238 -16.56520 -16.35437 -15.76489 -15.60775 -15.42649 -15.34556 -14.88620 -14.80338 -14.57791 -14.41409 -14.27934 -13.97169 -13.86747 -13.80300 -13.39038 -13.25954 -13.15851 -12.90767 -12.89462 -12.80045 -12.73765 -12.53585 -12.35533 -12.24208 -12.07078 -12.01073 -11.79859 -11.38744 -11.24057 -11.00886 -10.94335 -10.79067 -10.51965 -9.68266 -9.56989 -8.98520 -7.98807 -5.27327 1.33121 1.40478 1.45291 1.51699 1.63130 1.69027 2.06168 2.53647 2.95843 3.33345 3.48900 3.54491 3.75723 3.79799 3.91131 4.05701 4.08392 4.10647 4.14777 4.17845 4.24198 4.28796 4.32548 4.36993 4.47839 4.54839 4.54956 4.65154 4.70020 4.73331 4.81740 4.83993 4.89727 4.91652 4.92961 5.08837 5.11731 5.17104 5.24635 5.28824 5.30131 5.40579 5.42097 5.54270 5.66629 5.97517 6.23436 6.26494 6.46673 7.04018 7.22867 7.29314 8.03651 8.31374 9.24621 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007566 B = 0.003836 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3699.789813 B = 7298.445660 C =10385.998408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.049 3.951 4 C 0.507 3.493 5 O -0.575 6.575 6 N -0.598 5.598 7 C 0.072 3.928 8 C 0.105 3.895 9 C 0.479 3.521 10 O -0.565 6.565 11 N -0.604 5.604 12 C 0.100 3.900 13 C -0.119 4.119 14 C -0.091 4.091 15 H 0.072 0.928 16 C -0.141 4.141 17 C -0.106 4.106 18 C 0.148 3.852 19 H 0.058 0.942 20 C 0.184 3.816 21 N -0.745 5.745 22 C -0.246 4.246 23 H 0.060 0.940 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.975 3.025 27 H -0.283 1.283 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.158 0.842 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.050 0.950 49 H 0.015 0.985 50 H 0.007 0.993 51 H 0.372 0.628 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 8.071 -27.811 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.030 4.030 4 C 0.296 3.704 5 O -0.453 6.453 6 N -0.331 5.331 7 C -0.069 4.069 8 C -0.021 4.021 9 C 0.267 3.733 10 O -0.443 6.443 11 N -0.339 5.339 12 C -0.021 4.021 13 C -0.157 4.157 14 C -0.110 4.110 15 H 0.090 0.910 16 C -0.198 4.198 17 C -0.145 4.145 18 C 0.044 3.956 19 H 0.076 0.924 20 C 0.058 3.942 21 N -0.390 5.390 22 C -0.378 4.378 23 H 0.078 0.922 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.803 3.197 27 H -0.209 1.209 28 H -0.211 1.211 29 H -0.202 1.202 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.175 0.825 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.129 0.871 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.033 0.967 50 H 0.025 0.975 51 H 0.205 0.795 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.996 7.423 -27.294 28.723 hybrid contribution -0.359 -0.104 1.846 1.884 sum -5.355 7.319 -25.448 27.015 Atomic orbital electron populations 1.23040 0.78185 1.04180 1.01687 1.87967 1.22314 1.26889 1.95769 1.22400 0.89035 0.86681 1.04879 1.21003 0.90523 0.83781 0.75104 1.90695 1.75674 1.28460 1.50505 1.47509 1.05408 1.07549 1.72683 1.22168 0.99187 0.81400 1.04159 1.21539 0.81088 1.07433 0.92036 1.22019 0.82120 0.75904 0.93298 1.90818 1.56708 1.50249 1.46478 1.48348 1.06099 1.72161 1.07307 1.22214 0.90372 1.00649 0.88883 1.21965 0.98608 0.98654 0.96479 1.21154 0.94790 1.00306 0.94701 0.90958 1.21770 0.98298 0.98163 1.01604 1.21825 0.95916 0.97396 0.99358 1.21199 0.94498 0.98480 0.81415 0.92362 1.21007 0.92957 0.97423 0.82811 1.42731 1.11274 1.83761 1.01256 1.19450 0.93243 1.38346 0.86795 0.92222 1.25542 0.98102 1.02961 0.99708 1.69802 1.15565 1.55903 1.20482 0.85201 0.77808 0.78131 0.78561 1.20904 1.21115 1.20241 0.92947 0.91297 0.88819 0.88921 0.86006 0.88124 0.90223 0.90803 0.82505 0.86845 0.86203 0.90288 0.91259 0.87117 0.94052 0.90237 0.92872 0.93085 0.93097 0.96716 0.97517 0.79539 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -10.68 10.24 -129.94 -1.33 -12.01 16 3 C 0.05 0.99 4.97 71.24 0.35 1.34 16 4 C 0.51 14.25 7.75 87.66 0.68 14.93 16 5 O -0.57 -22.36 16.08 16.01 0.26 -22.10 16 6 N -0.60 -12.79 2.36 -851.12 -2.01 -14.80 16 7 C 0.07 0.87 10.24 127.77 1.31 2.18 16 8 C 0.11 2.13 4.30 85.63 0.37 2.49 16 9 C 0.48 15.11 7.68 87.66 0.67 15.78 16 10 O -0.56 -24.27 11.83 -3.04 -0.04 -24.31 16 11 N -0.60 -17.37 2.98 -794.31 -2.37 -19.74 16 12 C 0.10 1.63 6.34 86.31 0.55 2.18 16 13 C -0.12 -1.77 5.36 30.67 0.16 -1.60 16 14 C -0.09 -2.03 2.68 -10.77 -0.03 -2.06 16 15 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 16 C -0.14 -2.82 9.19 71.98 0.66 -2.15 16 17 C -0.11 -3.56 4.41 30.67 0.14 -3.43 16 18 C 0.15 5.60 3.02 44.98 0.14 5.74 16 19 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 20 C 0.18 9.25 4.10 86.38 0.35 9.61 16 21 N -0.75 -43.43 5.28 -343.45 -1.81 -45.25 16 22 C -0.25 -15.59 9.99 84.03 0.84 -14.75 16 23 H 0.06 3.79 7.83 -2.91 -0.02 3.76 16 24 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 25 N -0.97 -62.41 13.06 21.65 0.28 -62.12 16 26 Si 0.97 49.71 29.55 68.60 2.03 51.74 16 27 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 29 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.65 7.40 -2.39 -0.02 1.63 16 34 H 0.12 1.31 8.11 -2.39 -0.02 1.29 16 35 H 0.10 0.44 8.14 -2.39 -0.02 0.43 16 36 H 0.08 0.87 6.44 -2.39 -0.02 0.86 16 37 H 0.07 0.97 8.07 -2.38 -0.02 0.96 16 38 H 0.16 1.49 7.41 -2.39 -0.02 1.47 16 39 H 0.11 2.33 7.40 -2.39 -0.02 2.31 16 40 H 0.12 1.03 5.99 -2.39 -0.01 1.02 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 47 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.05 2.04 7.22 -2.39 -0.02 2.02 16 49 H 0.01 0.80 7.07 -2.39 -0.02 0.78 16 50 H 0.01 0.40 6.41 -2.39 -0.02 0.39 16 51 H 0.37 22.15 6.82 -92.71 -0.63 21.52 16 52 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -95.65 409.58 3.19 -92.47 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.27 Total: 28.19 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 7.91 Total: 27.94 kcal Atomic # 7 Polarization: -135.99 SS G_CDS: -5.91 Total: -141.90 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -1.11 Total: -58.43 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.03 Total: 51.74 kcal Total: -95.65 3.19 -92.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264552105.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.708 kcal (2) G-P(sol) polarization free energy of solvation -95.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds