Wall clock time and date at job start Wed Apr 1 2020 00:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34632 * 116.99893 * 2 1 4 4 O 1.21512 * 120.00307 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00169 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00496 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.47434 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99628 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00028 * 180.02562 * 7 6 5 10 10 C 1.46932 * 120.62958 * 5.45185 * 9 7 6 11 11 C 1.53195 * 108.76970 * 126.36986 * 10 9 7 12 12 C 1.53036 * 109.31453 * 54.63835 * 11 10 9 13 13 C 1.53075 * 109.65758 * 298.69396 * 12 11 10 14 14 H 1.08995 * 109.62348 * 181.17483 * 13 12 11 15 15 C 1.53002 * 109.39161 * 301.28036 * 13 12 11 16 16 C 1.46925 * 120.63199 * 185.43123 * 9 7 6 17 17 H 1.08997 * 109.58832 * 113.70000 * 16 9 7 18 18 C 1.53007 * 109.58412 * 353.41818 * 16 9 7 19 19 C 1.52993 * 109.46955 * 180.02562 * 18 16 9 20 20 C 1.53002 * 109.47272 * 175.07090 * 19 18 16 21 21 N 1.46504 * 109.47115 * 179.97438 * 20 19 18 22 22 C 1.36943 * 119.99473 * 180.02562 * 21 20 19 23 23 H 1.07996 * 120.00124 * 0.02562 * 22 21 20 24 24 C 1.38807 * 119.99511 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00153 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 120.00269 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47419 * 270.00298 * 26 24 22 28 28 H 1.48503 * 109.46745 * 30.00539 * 26 24 22 29 29 H 1.48501 * 109.46805 * 149.99763 * 26 24 22 30 30 H 1.08995 * 109.47000 * 59.99915 * 1 2 3 31 31 H 1.08999 * 109.46953 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47004 * 299.99370 * 1 2 3 33 33 H 0.97006 * 119.99555 * 0.02562 * 5 3 2 34 34 H 1.09006 * 109.46886 * 60.00205 * 6 5 3 35 35 H 1.09002 * 109.47458 * 300.00490 * 6 5 3 36 36 H 1.08995 * 109.58391 * 246.15378 * 10 9 7 37 37 H 1.08998 * 109.58362 * 6.44038 * 10 9 7 38 38 H 1.09010 * 109.49072 * 174.58447 * 11 10 9 39 39 H 1.08991 * 109.49951 * 294.67811 * 11 10 9 40 40 H 1.08995 * 109.46280 * 58.65219 * 12 11 10 41 41 H 1.09000 * 109.45841 * 178.62497 * 12 11 10 42 42 H 1.08994 * 109.47484 * 179.74833 * 15 13 12 43 43 H 1.09005 * 109.47016 * 299.75294 * 15 13 12 44 44 H 1.09006 * 109.46898 * 59.74635 * 15 13 12 45 45 H 1.08991 * 109.46971 * 60.04246 * 18 16 9 46 46 H 1.09001 * 109.46668 * 300.04294 * 18 16 9 47 47 H 1.09008 * 109.47622 * 55.06934 * 19 18 16 48 48 H 1.09000 * 109.47653 * 295.07218 * 19 18 16 49 49 H 1.08998 * 109.47216 * 59.99871 * 20 19 18 50 50 H 1.08999 * 109.47002 * 299.99820 * 20 19 18 51 51 H 0.97000 * 120.00244 * 0.02562 * 21 20 19 52 52 H 0.97001 * 120.00692 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0743 2.5755 0.0000 7 6 5.5683 2.3780 0.0001 8 8 6.0318 1.2573 0.0001 9 7 6.3893 3.4469 0.0001 10 6 5.8471 4.8072 0.1202 11 6 6.5500 5.5172 1.2816 12 6 8.0642 5.4608 1.0674 13 6 8.5267 4.0018 1.0425 14 1 9.6080 3.9627 0.9108 15 6 8.1476 3.3261 2.3619 16 6 7.8434 3.2739 -0.1194 17 1 8.1849 3.6943 -1.0653 18 6 8.1888 1.7843 -0.0657 19 6 9.7034 1.6073 -0.1897 20 6 10.0604 0.1300 -0.0131 21 7 11.5107 -0.0395 -0.1325 22 6 12.0668 -1.2849 -0.0095 23 1 11.4363 -2.1420 0.1751 24 6 13.4408 -1.4457 -0.1231 25 7 13.9754 -2.6427 -0.0054 26 14 14.5313 0.0366 -0.4446 27 1 14.6830 0.2313 -1.9089 28 1 13.9116 1.2461 0.1541 29 1 15.8661 -0.1892 0.1657 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 3.9374 0.4566 0.0005 34 1 3.7810 3.1331 0.8895 35 1 3.7818 3.1320 -0.8905 36 1 6.0262 5.3549 -0.8050 37 1 4.7757 4.7577 0.3141 38 1 6.2267 6.5575 1.3210 39 1 6.2962 5.0212 2.2183 40 1 8.3148 5.9352 0.1187 41 1 8.5657 5.9865 1.8799 42 1 8.4724 2.2858 2.3439 43 1 8.6340 3.8444 3.1884 44 1 7.0663 3.3670 2.4935 45 1 7.6943 1.2669 -0.8876 46 1 7.8504 1.3669 0.8826 47 1 10.2024 2.1962 0.5800 48 1 10.0294 1.9447 -1.1736 49 1 9.5616 -0.4589 -0.7828 50 1 9.7346 -0.2074 0.9708 51 1 12.0770 0.7303 -0.2987 52 1 14.9356 -2.7551 -0.0852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264570226.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:37 Heat of formation + Delta-G solvation = -91.413773 kcal Electronic energy + Delta-G solvation = -30979.856473 eV Core-core repulsion = 26787.504305 eV Total energy + Delta-G solvation = -4192.352168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.32707 -40.61311 -38.35049 -36.94706 -35.90437 -34.97271 -34.14336 -33.38623 -31.57792 -30.01227 -29.33974 -27.70844 -26.86022 -26.08245 -24.52955 -23.20249 -21.90317 -21.33085 -21.08187 -20.37907 -19.50649 -18.45086 -17.45902 -17.38229 -17.04935 -16.74356 -16.40009 -16.03413 -15.57472 -15.11896 -14.70005 -14.64620 -14.47241 -14.30612 -13.98035 -13.95989 -13.73954 -13.52628 -13.33764 -12.92549 -12.80016 -12.72598 -12.41122 -12.31103 -11.99827 -11.94510 -11.72707 -11.36547 -11.21808 -11.13269 -11.08436 -11.03366 -10.88704 -10.83290 -10.73190 -10.27273 -10.17024 -10.03687 -9.71040 -9.52014 -9.24422 -8.81942 -8.81103 -7.13928 -5.69904 -3.04319 1.68869 2.19743 2.44774 2.62906 3.41199 3.43848 3.48562 3.90713 3.93985 4.32235 4.48207 4.53429 4.64947 4.66876 4.77662 4.79656 4.81776 4.86945 4.88296 4.92701 5.08618 5.13741 5.24727 5.31895 5.42197 5.45145 5.48308 5.49111 5.58573 5.66406 5.69900 5.72016 5.82151 5.87793 5.92242 5.98274 6.06764 6.09702 6.19896 6.25106 6.36086 6.40974 6.72077 6.92767 6.95071 6.99974 7.05435 7.78389 7.93975 8.08487 8.49736 9.29665 10.02219 10.23073 11.48904 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.002539 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.245318 B =11024.144239 C =13089.579376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.368 6.368 3 C 0.652 3.348 4 O -0.577 6.577 5 N -0.697 5.697 6 C 0.117 3.883 7 C 0.507 3.493 8 O -0.513 6.513 9 N -0.600 5.600 10 C 0.103 3.897 11 C -0.137 4.137 12 C -0.116 4.116 13 C -0.107 4.107 14 H 0.089 0.911 15 C -0.148 4.148 16 C 0.153 3.847 17 H 0.074 0.926 18 C -0.105 4.105 19 C -0.138 4.138 20 C 0.161 3.839 21 N -0.759 5.759 22 C -0.239 4.239 23 H 0.090 0.910 24 C 0.000 4.000 25 N -0.937 5.937 26 Si 0.886 3.114 27 H -0.285 1.285 28 H -0.278 1.278 29 H -0.292 1.292 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.421 0.579 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.026 0.974 50 H 0.024 0.976 51 H 0.359 0.641 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.111 18.997 1.328 32.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.282 6.282 3 C 0.404 3.596 4 O -0.466 6.466 5 N -0.360 5.360 6 C -0.009 4.009 7 C 0.294 3.706 8 O -0.389 6.389 9 N -0.334 5.334 10 C -0.020 4.020 11 C -0.175 4.175 12 C -0.154 4.154 13 C -0.126 4.126 14 H 0.107 0.893 15 C -0.205 4.205 16 C 0.051 3.949 17 H 0.092 0.908 18 C -0.143 4.143 19 C -0.176 4.176 20 C 0.034 3.966 21 N -0.404 5.404 22 C -0.369 4.369 23 H 0.107 0.893 24 C -0.195 4.195 25 N -0.585 5.585 26 Si 0.716 3.284 27 H -0.212 1.212 28 H -0.204 1.204 29 H -0.218 1.218 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.260 0.740 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.044 0.956 50 H 0.042 0.958 51 H 0.191 0.809 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -26.241 18.604 1.360 32.196 hybrid contribution 1.015 0.874 -0.225 1.358 sum -25.226 19.478 1.136 31.891 Atomic orbital electron populations 1.23232 0.74078 1.03701 1.02748 1.86274 1.24375 1.30630 1.86872 1.17957 0.83031 0.82330 0.76243 1.91001 1.64736 1.34871 1.56007 1.44230 1.03345 1.10464 1.77967 1.21107 0.90099 0.84873 1.04867 1.20307 0.88136 0.85126 0.77047 1.90858 1.75578 1.23788 1.48717 1.48021 1.07172 1.05855 1.72349 1.21844 0.98407 0.82330 0.99435 1.21958 0.96193 1.00670 0.98726 1.21571 0.95201 0.96437 1.02161 1.21600 1.00892 0.94438 0.95633 0.89325 1.21893 1.01144 1.01474 0.95952 1.21469 0.77415 0.98223 0.97795 0.90833 1.22111 0.94714 0.92326 1.05120 1.21980 0.95767 0.98539 1.01320 1.20548 0.85042 0.92649 0.98328 1.42760 1.02223 1.06739 1.88674 1.19106 0.91458 0.85494 1.40871 0.89267 1.24687 0.96435 0.96174 1.02242 1.69708 1.10981 1.20480 1.57379 0.86513 0.80577 0.83247 0.78015 1.21160 1.20397 1.21806 0.91768 0.87772 0.91764 0.74025 0.88240 0.88157 0.90794 0.89671 0.90638 0.90885 0.91776 0.91501 0.91505 0.92934 0.92854 0.89759 0.89970 0.92172 0.92533 0.95640 0.95769 0.80854 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -3.59 10.62 -40.30 -0.43 -4.02 16 3 C 0.65 7.09 8.75 54.05 0.47 7.56 16 4 O -0.58 -7.40 16.13 -19.28 -0.31 -7.71 16 5 N -0.70 -6.70 5.53 -66.47 -0.37 -7.07 16 6 C 0.12 0.93 4.56 -5.19 -0.02 0.90 16 7 C 0.51 4.92 7.68 -10.99 -0.08 4.83 16 8 O -0.51 -6.67 11.07 5.55 0.06 -6.61 16 9 N -0.60 -5.00 2.42 -165.21 -0.40 -5.40 16 10 C 0.10 0.55 6.33 -3.71 -0.02 0.53 16 11 C -0.14 -0.74 5.74 -26.61 -0.15 -0.89 16 12 C -0.12 -0.79 5.42 -26.67 -0.14 -0.93 16 13 C -0.11 -0.98 2.32 -90.48 -0.21 -1.19 16 14 H 0.09 0.90 6.66 -51.93 -0.35 0.55 16 15 C -0.15 -1.48 8.21 37.16 0.30 -1.17 16 16 C 0.15 1.54 2.71 -67.60 -0.18 1.36 16 17 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 18 C -0.10 -1.40 2.65 -26.73 -0.07 -1.47 16 19 C -0.14 -2.15 5.12 -26.73 -0.14 -2.29 16 20 C 0.16 3.34 6.26 -4.04 -0.03 3.31 16 21 N -0.76 -19.03 5.41 -59.91 -0.32 -19.35 16 22 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 23 H 0.09 2.84 8.06 -52.49 -0.42 2.41 16 24 C 0.00 -0.01 5.50 -17.43 -0.10 -0.10 16 25 N -0.94 -30.32 13.97 55.49 0.78 -29.54 16 26 Si 0.89 22.72 27.74 -169.99 -4.71 18.00 16 27 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.67 6.52 56.52 0.37 -6.31 16 29 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.42 4.16 7.55 -40.82 -0.31 3.85 16 34 H 0.10 0.67 7.46 -51.93 -0.39 0.28 16 35 H 0.10 0.68 8.12 -51.93 -0.42 0.26 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.32 5.96 -51.93 -0.31 0.01 16 38 H 0.08 0.30 8.14 -51.92 -0.42 -0.13 16 39 H 0.07 0.45 6.34 -51.93 -0.33 0.12 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.81 6.34 -51.93 -0.33 0.48 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.51 5.97 -51.93 -0.31 0.20 16 45 H 0.08 1.26 6.45 -51.93 -0.34 0.93 16 46 H 0.08 1.21 5.22 -51.93 -0.27 0.93 16 47 H 0.06 0.91 6.33 -51.92 -0.33 0.58 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.36 8.68 5.53 -40.82 -0.23 8.45 16 52 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -36.23 397.89 -7.74 -43.97 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -8.57 Total: 7.12 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 0.54 Total: 4.62 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -0.32 Total: -61.36 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.68 Total: -18.34 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.00 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.23 -7.74 -43.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264570226.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.443 kcal (2) G-P(sol) polarization free energy of solvation -36.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds