Wall clock time and date at job start Wed Apr 1 2020 00:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34632 * 116.99893 * 2 1 4 4 O 1.21512 * 120.00307 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00169 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00496 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.47434 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99628 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00028 * 180.02562 * 7 6 5 10 10 C 1.46932 * 120.62958 * 5.45185 * 9 7 6 11 11 C 1.53195 * 108.76970 * 126.36986 * 10 9 7 12 12 C 1.53036 * 109.31453 * 54.63835 * 11 10 9 13 13 C 1.53075 * 109.65758 * 298.69396 * 12 11 10 14 14 H 1.08995 * 109.62348 * 181.17483 * 13 12 11 15 15 C 1.53002 * 109.39161 * 301.28036 * 13 12 11 16 16 C 1.46925 * 120.63199 * 185.43123 * 9 7 6 17 17 H 1.08997 * 109.58832 * 113.70000 * 16 9 7 18 18 C 1.53007 * 109.58412 * 353.41818 * 16 9 7 19 19 C 1.52993 * 109.46955 * 180.02562 * 18 16 9 20 20 C 1.53002 * 109.47272 * 175.07090 * 19 18 16 21 21 N 1.46504 * 109.47115 * 179.97438 * 20 19 18 22 22 C 1.36943 * 119.99473 * 180.02562 * 21 20 19 23 23 H 1.07996 * 120.00124 * 0.02562 * 22 21 20 24 24 C 1.38807 * 119.99511 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00153 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 120.00269 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47419 * 270.00298 * 26 24 22 28 28 H 1.48503 * 109.46745 * 30.00539 * 26 24 22 29 29 H 1.48501 * 109.46805 * 149.99763 * 26 24 22 30 30 H 1.08995 * 109.47000 * 59.99915 * 1 2 3 31 31 H 1.08999 * 109.46953 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47004 * 299.99370 * 1 2 3 33 33 H 0.97006 * 119.99555 * 0.02562 * 5 3 2 34 34 H 1.09006 * 109.46886 * 60.00205 * 6 5 3 35 35 H 1.09002 * 109.47458 * 300.00490 * 6 5 3 36 36 H 1.08995 * 109.58391 * 246.15378 * 10 9 7 37 37 H 1.08998 * 109.58362 * 6.44038 * 10 9 7 38 38 H 1.09010 * 109.49072 * 174.58447 * 11 10 9 39 39 H 1.08991 * 109.49951 * 294.67811 * 11 10 9 40 40 H 1.08995 * 109.46280 * 58.65219 * 12 11 10 41 41 H 1.09000 * 109.45841 * 178.62497 * 12 11 10 42 42 H 1.08994 * 109.47484 * 179.74833 * 15 13 12 43 43 H 1.09005 * 109.47016 * 299.75294 * 15 13 12 44 44 H 1.09006 * 109.46898 * 59.74635 * 15 13 12 45 45 H 1.08991 * 109.46971 * 60.04246 * 18 16 9 46 46 H 1.09001 * 109.46668 * 300.04294 * 18 16 9 47 47 H 1.09008 * 109.47622 * 55.06934 * 19 18 16 48 48 H 1.09000 * 109.47653 * 295.07218 * 19 18 16 49 49 H 1.08998 * 109.47216 * 59.99871 * 20 19 18 50 50 H 1.08999 * 109.47002 * 299.99820 * 20 19 18 51 51 H 0.97000 * 120.00244 * 0.02562 * 21 20 19 52 52 H 0.97001 * 120.00692 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0743 2.5755 0.0000 7 6 5.5683 2.3780 0.0001 8 8 6.0318 1.2573 0.0001 9 7 6.3893 3.4469 0.0001 10 6 5.8471 4.8072 0.1202 11 6 6.5500 5.5172 1.2816 12 6 8.0642 5.4608 1.0674 13 6 8.5267 4.0018 1.0425 14 1 9.6080 3.9627 0.9108 15 6 8.1476 3.3261 2.3619 16 6 7.8434 3.2739 -0.1194 17 1 8.1849 3.6943 -1.0653 18 6 8.1888 1.7843 -0.0657 19 6 9.7034 1.6073 -0.1897 20 6 10.0604 0.1300 -0.0131 21 7 11.5107 -0.0395 -0.1325 22 6 12.0668 -1.2849 -0.0095 23 1 11.4363 -2.1420 0.1751 24 6 13.4408 -1.4457 -0.1231 25 7 13.9754 -2.6427 -0.0054 26 14 14.5313 0.0366 -0.4446 27 1 14.6830 0.2313 -1.9089 28 1 13.9116 1.2461 0.1541 29 1 15.8661 -0.1892 0.1657 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 3.9374 0.4566 0.0005 34 1 3.7810 3.1331 0.8895 35 1 3.7818 3.1320 -0.8905 36 1 6.0262 5.3549 -0.8050 37 1 4.7757 4.7577 0.3141 38 1 6.2267 6.5575 1.3210 39 1 6.2962 5.0212 2.2183 40 1 8.3148 5.9352 0.1187 41 1 8.5657 5.9865 1.8799 42 1 8.4724 2.2858 2.3439 43 1 8.6340 3.8444 3.1884 44 1 7.0663 3.3670 2.4935 45 1 7.6943 1.2669 -0.8876 46 1 7.8504 1.3669 0.8826 47 1 10.2024 2.1962 0.5800 48 1 10.0294 1.9447 -1.1736 49 1 9.5616 -0.4589 -0.7828 50 1 9.7346 -0.2074 0.9708 51 1 12.0770 0.7303 -0.2987 52 1 14.9356 -2.7551 -0.0852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264570226.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:36 Heat of formation + Delta-G solvation = -117.811067 kcal Electronic energy + Delta-G solvation = -30981.001145 eV Core-core repulsion = 26787.504305 eV Total energy + Delta-G solvation = -4193.496841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.07658 -41.38236 -39.10100 -37.70357 -37.43144 -35.91054 -35.25324 -34.40194 -33.36585 -31.29281 -30.13265 -28.51547 -27.52106 -27.23167 -25.46102 -24.52023 -23.16786 -22.48434 -22.00966 -21.31240 -20.22059 -19.62391 -19.14556 -18.14366 -17.78287 -17.48698 -17.18318 -16.87422 -16.57224 -16.38749 -15.95219 -15.65982 -15.42260 -15.31475 -15.00373 -14.88500 -14.78057 -14.59634 -14.27514 -13.99390 -13.86353 -13.70944 -13.57245 -13.23583 -12.96276 -12.95465 -12.79863 -12.79213 -12.42494 -12.23841 -12.04199 -11.94416 -11.88597 -11.86136 -11.81761 -11.71919 -11.57560 -11.29107 -11.13877 -10.96344 -10.44740 -10.14248 -9.53102 -9.33033 -8.04964 -5.39588 1.01239 1.35737 1.41275 1.46612 1.48782 1.63474 1.95359 2.47250 3.22616 3.25428 3.27569 3.60569 3.80290 3.84408 3.91397 4.10805 4.17356 4.21266 4.23173 4.24344 4.29893 4.34081 4.37898 4.49809 4.57943 4.61891 4.68603 4.69466 4.71034 4.81163 4.87197 4.91004 4.98616 4.99494 5.06376 5.10905 5.17268 5.27031 5.28223 5.29768 5.33876 5.46909 5.50006 5.55441 5.72351 5.76621 6.19072 6.20992 6.35585 7.04902 7.05719 7.15686 7.80513 8.03015 9.16844 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.002539 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.245318 B =11024.144239 C =13089.579376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.379 6.379 3 C 0.650 3.350 4 O -0.599 6.599 5 N -0.697 5.697 6 C 0.121 3.879 7 C 0.505 3.495 8 O -0.555 6.555 9 N -0.595 5.595 10 C 0.097 3.903 11 C -0.134 4.134 12 C -0.112 4.112 13 C -0.105 4.105 14 H 0.080 0.920 15 C -0.144 4.144 16 C 0.157 3.843 17 H 0.085 0.915 18 C -0.091 4.091 19 C -0.123 4.123 20 C 0.159 3.841 21 N -0.758 5.758 22 C -0.242 4.242 23 H 0.049 0.951 24 C -0.068 4.068 25 N -0.985 5.985 26 Si 0.964 3.036 27 H -0.275 1.275 28 H -0.249 1.249 29 H -0.292 1.292 30 H 0.065 0.935 31 H 0.132 0.868 32 H 0.065 0.935 33 H 0.418 0.582 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.012 0.988 50 H 0.012 0.988 51 H 0.368 0.632 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.907 22.961 0.914 35.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.292 6.292 3 C 0.403 3.597 4 O -0.490 6.490 5 N -0.359 5.359 6 C -0.005 4.005 7 C 0.293 3.707 8 O -0.434 6.434 9 N -0.328 5.328 10 C -0.024 4.024 11 C -0.172 4.172 12 C -0.150 4.150 13 C -0.124 4.124 14 H 0.099 0.901 15 C -0.201 4.201 16 C 0.054 3.946 17 H 0.103 0.897 18 C -0.129 4.129 19 C -0.161 4.161 20 C 0.033 3.967 21 N -0.404 5.404 22 C -0.373 4.373 23 H 0.067 0.933 24 C -0.259 4.259 25 N -0.635 5.635 26 Si 0.790 3.210 27 H -0.201 1.201 28 H -0.173 1.173 29 H -0.219 1.219 30 H 0.084 0.916 31 H 0.150 0.850 32 H 0.084 0.916 33 H 0.257 0.743 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.030 0.970 50 H 0.030 0.970 51 H 0.201 0.799 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -27.084 22.625 0.950 35.304 hybrid contribution 1.162 -0.479 -0.062 1.258 sum -25.922 22.146 0.888 34.106 Atomic orbital electron populations 1.23532 0.72382 1.05646 1.02886 1.86283 1.26138 1.30167 1.86627 1.18065 0.83215 0.82373 0.76022 1.90975 1.65202 1.35546 1.57286 1.44343 1.03085 1.11088 1.77418 1.21217 0.88457 0.84399 1.06392 1.20625 0.88972 0.84779 0.76352 1.90851 1.76336 1.25424 1.50760 1.48067 1.06275 1.07005 1.71418 1.22150 0.99437 0.80415 1.00406 1.21957 0.95095 1.01964 0.98192 1.21552 0.96223 0.94231 1.02964 1.21580 1.00329 0.96121 0.94378 0.90135 1.21844 1.01377 0.99871 0.96992 1.21312 0.78820 0.95581 0.98855 0.89709 1.21885 0.92526 0.94987 1.03489 1.21850 0.97608 0.94542 1.02104 1.20680 0.82638 0.96308 0.97073 1.42730 1.03955 1.05263 1.88477 1.19054 0.91512 0.86311 1.40421 0.93305 1.25637 0.98066 0.99897 1.02330 1.69907 1.11421 1.23409 1.58804 0.85285 0.77768 0.79660 0.78328 1.20089 1.17298 1.21874 0.91638 0.85005 0.91637 0.74345 0.86584 0.86481 0.89023 0.87744 0.88291 0.91707 0.90697 0.91094 0.94362 0.92290 0.92498 0.91538 0.91688 0.91177 0.91570 0.96962 0.96991 0.79894 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.56 113.37 1.20 1.78 16 2 O -0.38 -7.22 10.62 -55.41 -0.59 -7.81 16 3 C 0.65 13.76 8.75 129.79 1.14 14.89 16 4 O -0.60 -14.77 16.13 19.80 0.32 -14.45 16 5 N -0.70 -13.05 5.53 -594.62 -3.29 -16.34 16 6 C 0.12 1.72 4.56 85.63 0.39 2.11 16 7 C 0.50 9.30 7.68 87.66 0.67 9.97 16 8 O -0.55 -14.75 11.07 -3.04 -0.03 -14.78 16 9 N -0.60 -8.69 2.42 -795.00 -1.93 -10.61 16 10 C 0.10 0.68 6.33 86.36 0.55 1.23 16 11 C -0.13 -0.94 5.74 30.67 0.18 -0.77 16 12 C -0.11 -1.14 5.42 30.63 0.17 -0.97 16 13 C -0.10 -1.71 2.32 -10.70 -0.02 -1.73 16 14 H 0.08 1.46 6.66 -2.39 -0.02 1.44 16 15 C -0.14 -2.75 8.21 71.98 0.59 -2.16 16 16 C 0.16 2.89 2.71 44.98 0.12 3.01 16 17 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 18 C -0.09 -2.43 2.65 30.59 0.08 -2.35 16 19 C -0.12 -3.78 5.12 30.59 0.16 -3.62 16 20 C 0.16 6.76 6.26 86.38 0.54 7.30 16 21 N -0.76 -38.17 5.41 -343.45 -1.86 -40.02 16 22 C -0.24 -14.79 10.47 84.03 0.88 -13.91 16 23 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 24 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 25 N -0.99 -65.42 13.97 21.65 0.30 -65.12 16 26 Si 0.96 46.60 27.74 68.60 1.90 48.50 16 27 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 28 H -0.25 -10.73 6.52 99.48 0.65 -10.09 16 29 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.42 8.42 7.55 -92.70 -0.70 7.72 16 34 H 0.12 1.29 7.46 -2.38 -0.02 1.27 16 35 H 0.12 1.30 8.12 -2.39 -0.02 1.28 16 36 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.10 0.37 5.96 -2.39 -0.01 0.36 16 38 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 39 H 0.06 0.59 6.34 -2.39 -0.02 0.58 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.04 0.94 6.34 -2.39 -0.02 0.93 16 43 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.06 1.03 5.97 -2.38 -0.01 1.01 16 45 H 0.07 2.04 6.45 -2.39 -0.02 2.02 16 46 H 0.06 1.98 5.22 -2.39 -0.01 1.97 16 47 H 0.07 2.03 6.33 -2.38 -0.02 2.02 16 48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.37 17.14 5.53 -92.71 -0.51 16.63 16 52 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -81.31 397.89 1.60 -79.72 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.33 Total: 29.87 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 7.10 Total: 11.05 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -6.77 Total: -132.10 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.30 Total: -37.04 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.50 kcal Total: -81.31 1.60 -79.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264570226.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.094 kcal (2) G-P(sol) polarization free energy of solvation -81.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds