Wall clock time and date at job start Wed Apr 1 2020 01:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99747 * 2 1 4 4 C 1.50700 * 109.46733 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00252 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00082 * 180.02562 * 4 3 2 7 7 C 1.46493 * 120.00075 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47641 * 325.00152 * 7 6 4 9 9 C 1.50697 * 109.47336 * 204.99683 * 7 6 4 10 10 O 1.21288 * 120.00079 * 343.55363 * 9 7 6 11 11 N 1.34782 * 120.00267 * 163.54698 * 9 7 6 12 12 C 1.46502 * 120.00051 * 174.73972 * 11 9 7 13 13 H 1.09003 * 110.63926 * 328.14547 * 12 11 9 14 14 C 1.55154 * 110.72037 * 91.47781 * 12 11 9 15 15 C 1.54910 * 101.57957 * 153.86316 * 14 12 11 16 16 N 1.47417 * 104.83327 * 322.99188 * 15 14 12 17 17 C 1.36938 * 125.64740 * 204.15802 * 16 15 14 18 18 H 1.08004 * 119.99882 * 179.97438 * 17 16 15 19 19 C 1.38817 * 120.00288 * 359.96529 * 17 16 15 20 20 N 1.31622 * 119.99449 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46984 * 90.00520 * 21 19 17 23 23 H 1.48509 * 109.46975 * 209.99775 * 21 19 17 24 24 H 1.48497 * 109.47638 * 329.99853 * 21 19 17 25 25 C 1.47021 * 108.70306 * 24.12956 * 16 15 14 26 26 H 1.08997 * 109.87921 * 239.51692 * 25 16 15 27 27 C 1.53005 * 110.01255 * 118.42781 * 25 16 15 28 28 C 1.53007 * 109.47167 * 85.00252 * 7 6 4 29 29 C 1.53002 * 109.46868 * 296.56257 * 28 7 6 30 30 C 1.53000 * 109.47115 * 56.56040 * 28 7 6 31 31 H 1.09001 * 109.46736 * 59.99993 * 1 2 3 32 32 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47325 * 300.00127 * 1 2 3 34 34 H 1.09001 * 109.47070 * 60.00468 * 3 2 1 35 35 H 1.08994 * 109.47132 * 299.99676 * 3 2 1 36 36 H 0.97006 * 119.99694 * 359.97438 * 6 4 3 37 37 H 0.96990 * 119.99682 * 354.46824 * 11 9 7 38 38 H 1.08998 * 111.00832 * 271.94471 * 14 12 11 39 39 H 1.09010 * 111.00181 * 35.79380 * 14 12 11 40 40 H 1.09001 * 110.36561 * 204.15491 * 15 14 12 41 41 H 1.08999 * 110.45638 * 81.88084 * 15 14 12 42 42 H 0.96999 * 119.99275 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.47029 * 302.11827 * 27 25 16 44 44 H 1.09004 * 109.46907 * 62.10678 * 27 25 16 45 45 H 1.08997 * 109.47234 * 182.11497 * 27 25 16 46 46 H 1.08999 * 109.47374 * 176.56557 * 28 7 6 47 47 H 1.09007 * 109.47019 * 66.84284 * 29 28 7 48 48 H 1.08991 * 109.47255 * 186.84248 * 29 28 7 49 49 H 1.09000 * 109.47449 * 306.84966 * 29 28 7 50 50 H 1.09004 * 109.47105 * 60.00456 * 30 28 7 51 51 H 1.09001 * 109.47116 * 180.02562 * 30 28 7 52 52 H 1.08999 * 109.47421 * 300.00488 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2968 0.0013 7 6 5.7369 2.1811 0.0025 8 1 6.0322 1.3132 0.5921 9 6 6.3389 3.4251 0.6033 10 8 5.6684 4.4294 0.7168 11 7 7.6223 3.4216 1.0148 12 6 8.2420 4.6605 1.4917 13 1 7.8244 5.5234 0.9729 14 6 8.0724 4.8034 3.0273 15 6 9.2876 5.6917 3.3931 16 7 10.3715 5.2324 2.5057 17 6 11.7125 5.3655 2.7490 18 1 12.4307 4.9938 2.0331 19 6 12.1489 5.9784 3.9156 20 7 11.2736 6.4320 4.7877 21 14 13.9781 6.1593 4.2476 22 1 14.4581 7.4475 3.6860 23 1 14.2198 6.1376 5.7128 24 1 14.7108 5.0369 3.6085 25 6 9.7743 4.6071 1.3167 26 1 10.1026 3.5707 1.2385 27 6 10.1816 5.3779 0.0593 28 6 6.2365 2.0155 -1.4342 29 6 5.6939 0.7084 -2.0154 30 6 5.7492 3.1920 -2.2824 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8593 3.1726 0.0009 37 1 8.1345 2.5981 0.9989 38 1 7.1352 5.3032 3.2721 39 1 8.1357 3.8327 3.5194 40 1 9.5642 5.5449 4.4371 41 1 9.0625 6.7415 3.2050 42 1 11.5785 6.8599 5.6030 43 1 9.8663 6.4172 0.1522 44 1 11.2645 5.3359 -0.0577 45 1 9.7042 4.9298 -0.8121 46 1 7.3262 1.9907 -1.4393 47 1 4.6115 0.7804 -2.1233 48 1 6.1451 0.5297 -2.9913 49 1 5.9381 -0.1161 -1.3457 50 1 6.1358 4.1232 -1.8684 51 1 6.1048 3.0738 -3.3060 52 1 4.6595 3.2168 -2.2773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264722548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:08 Heat of formation + Delta-G solvation = -115.807357 kcal Electronic energy + Delta-G solvation = -31252.351623 eV Core-core repulsion = 27058.941669 eV Total energy + Delta-G solvation = -4193.409953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.82608 -40.56650 -39.31129 -38.41931 -36.93016 -35.66767 -34.25562 -33.77942 -32.05102 -30.77874 -30.13158 -28.35552 -28.01515 -26.70286 -26.03745 -25.64432 -22.53494 -22.14581 -21.64496 -21.45467 -20.61086 -19.01866 -18.69653 -18.04776 -17.56764 -17.48158 -17.00958 -16.78523 -16.54338 -16.28884 -15.88401 -15.70812 -15.42687 -15.24965 -14.86796 -14.76162 -14.37352 -14.17218 -14.03297 -13.98339 -13.64225 -13.30555 -13.22357 -13.21066 -12.92073 -12.87274 -12.75524 -12.59556 -12.37214 -12.34324 -12.23731 -12.14008 -12.00600 -11.96011 -11.82308 -11.56664 -11.43542 -10.93871 -10.85970 -10.74441 -10.72416 -10.13311 -10.03250 -8.88728 -7.74288 -5.18817 1.41666 1.48567 1.49749 1.56981 1.58325 1.62366 2.22770 2.52584 3.12831 3.36127 3.45644 3.65879 3.71679 3.80325 3.87117 3.92012 3.97445 4.16618 4.21775 4.23083 4.27733 4.45383 4.51741 4.52863 4.58958 4.63561 4.64085 4.67581 4.80647 4.82328 4.89109 4.93678 4.97045 5.00052 5.06415 5.10298 5.14042 5.27696 5.36640 5.39395 5.45082 5.51205 5.60711 5.61810 5.81633 6.03505 6.31880 6.46373 6.48847 7.11331 7.12333 7.18069 7.80256 8.43231 9.27470 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022488 B = 0.002255 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.830019 B =12414.291267 C =12960.229360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.044 3.956 4 C 0.514 3.486 5 O -0.553 6.553 6 N -0.702 5.702 7 C 0.140 3.860 8 H 0.109 0.891 9 C 0.520 3.480 10 O -0.563 6.563 11 N -0.700 5.700 12 C 0.157 3.843 13 H 0.086 0.914 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.614 5.614 17 C -0.224 4.224 18 H 0.085 0.915 19 C -0.071 4.071 20 N -0.951 5.951 21 Si 0.977 3.023 22 H -0.290 1.290 23 H -0.297 1.297 24 H -0.267 1.267 25 C 0.149 3.851 26 H 0.051 0.949 27 C -0.146 4.146 28 C -0.096 4.096 29 C -0.128 4.128 30 C -0.143 4.143 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.416 0.584 37 H 0.414 0.586 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.075 0.925 41 H -0.014 1.014 42 H 0.245 0.755 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.043 0.957 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.044 0.956 51 H 0.069 0.931 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.469 -10.496 -14.533 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.035 4.035 4 C 0.301 3.699 5 O -0.430 6.430 6 N -0.358 5.358 7 C 0.031 3.969 8 H 0.127 0.873 9 C 0.306 3.694 10 O -0.442 6.442 11 N -0.351 5.351 12 C 0.051 3.949 13 H 0.104 0.896 14 C -0.178 4.178 15 C 0.031 3.969 16 N -0.339 5.339 17 C -0.353 4.353 18 H 0.103 0.897 19 C -0.263 4.263 20 N -0.601 5.601 21 Si 0.806 3.194 22 H -0.218 1.218 23 H -0.224 1.224 24 H -0.192 1.192 25 C 0.043 3.957 26 H 0.069 0.931 27 C -0.206 4.206 28 C -0.116 4.116 29 C -0.185 4.185 30 C -0.201 4.201 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.254 0.746 37 H 0.251 0.749 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.004 0.996 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.115 0.885 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.072 0.928 50 H 0.063 0.937 51 H 0.088 0.912 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.321 -10.671 -14.323 26.312 hybrid contribution 0.947 0.867 0.719 1.471 sum -18.374 -9.804 -13.604 24.875 Atomic orbital electron populations 1.23029 0.78381 1.04155 1.01559 1.87956 1.22010 1.26429 1.95779 1.22330 0.89214 0.86874 1.05130 1.20708 0.89894 0.83823 0.75475 1.90726 1.75194 1.27730 1.49338 1.45544 1.05065 1.09908 1.75284 1.20837 0.81698 0.95822 0.98501 0.87289 1.20718 0.81896 0.89803 0.77004 1.90682 1.60868 1.35684 1.56936 1.45811 1.12436 1.12323 1.64545 1.21729 0.92139 0.87031 0.94005 0.89577 1.23191 0.98398 1.00469 0.95759 1.21669 0.85284 0.92572 0.97407 1.44716 1.01777 1.68423 1.18986 1.19381 0.82233 1.31070 1.02591 0.89695 1.25608 1.01805 1.01450 0.97455 1.70046 1.32691 1.45902 1.11444 0.85091 0.79985 0.77895 0.76449 1.21752 1.22400 1.19198 1.21219 0.90458 0.96353 0.87718 0.93111 1.22123 1.01089 0.99767 0.97575 1.21489 1.01585 0.96919 0.91570 1.21750 1.00406 0.95680 1.00697 1.21793 1.01688 0.96545 1.00056 0.92170 0.88680 0.92535 0.88006 0.87372 0.74552 0.74948 0.91430 0.91431 0.90666 0.99595 0.94518 0.94538 0.93555 0.90798 0.88534 0.93781 0.91733 0.92848 0.93686 0.91203 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -7.60 10.24 -129.94 -1.33 -8.93 16 3 C 0.04 0.61 6.42 71.24 0.46 1.06 16 4 C 0.51 10.33 6.47 87.66 0.57 10.89 16 5 O -0.55 -15.34 13.50 15.99 0.22 -15.13 16 6 N -0.70 -12.64 4.06 -446.10 -1.81 -14.45 16 7 C 0.14 2.75 2.37 44.25 0.10 2.85 16 8 H 0.11 2.24 7.58 -2.39 -0.02 2.22 16 9 C 0.52 12.60 6.03 87.66 0.53 13.12 16 10 O -0.56 -16.83 15.46 -3.05 -0.05 -16.87 16 11 N -0.70 -17.29 5.17 -436.92 -2.26 -19.55 16 12 C 0.16 5.13 2.81 46.18 0.13 5.26 16 13 H 0.09 3.03 7.33 -2.39 -0.02 3.01 16 14 C -0.14 -5.25 6.77 31.99 0.22 -5.04 16 15 C 0.16 7.64 5.89 86.86 0.51 8.16 16 16 N -0.61 -29.87 3.13 -668.28 -2.09 -31.96 16 17 C -0.22 -11.96 9.90 84.03 0.83 -11.13 16 18 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 19 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 20 N -0.95 -56.13 10.09 21.65 0.22 -55.91 16 21 Si 0.98 44.99 29.55 68.60 2.03 47.02 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 C 0.15 5.51 3.47 45.34 0.16 5.67 16 26 H 0.05 1.77 7.72 -2.39 -0.02 1.75 16 27 C -0.15 -4.92 9.14 71.98 0.66 -4.27 16 28 C -0.10 -1.61 2.75 -10.79 -0.03 -1.64 16 29 C -0.13 -2.31 7.65 71.98 0.55 -1.76 16 30 C -0.14 -2.36 8.79 71.98 0.63 -1.73 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.42 6.67 7.72 -92.70 -0.72 5.95 16 37 H 0.41 8.30 8.38 -92.72 -0.78 7.53 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 40 H 0.08 4.21 5.87 -2.39 -0.01 4.20 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.25 14.17 8.31 -92.71 -0.77 13.39 16 43 H 0.04 1.32 8.14 -2.38 -0.02 1.31 16 44 H 0.05 1.63 8.05 -2.38 -0.02 1.61 16 45 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.04 0.88 6.30 -2.38 -0.02 0.86 16 48 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.05 1.13 7.33 -2.39 -0.02 1.12 16 50 H 0.04 0.89 7.23 -2.39 -0.02 0.87 16 51 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.06 0.93 7.51 -2.39 -0.02 0.91 16 Total: -1.00 -72.43 410.50 1.38 -71.05 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.57 Total: 25.24 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 7.03 Total: 19.48 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -5.94 Total: -121.86 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.16 Total: -40.93 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -72.43 1.38 -71.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264722548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.754 kcal (2) G-P(sol) polarization free energy of solvation -72.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds