Wall clock time and date at job start Wed Apr 1 2020 00:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 O 1.42909 * 109.46705 * 119.99977 * 2 1 3 5 5 C 1.42897 * 113.99708 * 89.99653 * 4 2 1 6 6 C 1.50700 * 109.47141 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99890 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00379 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00130 * 359.97438 * 8 6 5 10 10 C 1.46499 * 120.00024 * 180.02562 * 8 6 5 11 11 C 1.53118 * 109.52490 * 120.00048 * 10 8 6 12 12 C 1.53036 * 109.28068 * 177.61960 * 11 10 8 13 13 N 1.46843 * 109.52229 * 300.82162 * 12 11 10 14 14 C 1.46902 * 110.99818 * 185.83572 * 13 12 11 15 15 C 1.50702 * 109.47027 * 169.99758 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00042 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 89.99599 * 22 20 18 24 24 H 1.48494 * 109.47201 * 209.99761 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99936 * 22 20 18 26 26 C 1.46843 * 111.20082 * 61.74351 * 13 12 11 27 27 C 1.53038 * 109.52070 * 298.25410 * 26 13 12 28 28 H 1.09002 * 109.46976 * 300.00082 * 1 2 3 29 29 H 1.09006 * 109.46543 * 59.99919 * 1 2 3 30 30 H 1.08993 * 109.47616 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46953 * 239.99633 * 2 1 3 32 32 H 1.09002 * 109.46679 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47396 * 299.99575 * 3 2 1 34 34 H 1.09002 * 109.47205 * 60.00058 * 3 2 1 35 35 H 1.09002 * 109.47597 * 60.00194 * 5 4 2 36 36 H 1.09002 * 109.47835 * 299.99961 * 5 4 2 37 37 H 1.08998 * 109.46821 * 270.00537 * 9 8 6 38 38 H 1.09004 * 109.46846 * 30.00177 * 9 8 6 39 39 H 1.09000 * 109.47182 * 149.99869 * 9 8 6 40 40 H 1.08996 * 109.52259 * 359.87125 * 10 8 6 41 41 H 1.08995 * 109.50555 * 57.67842 * 11 10 8 42 42 H 1.08995 * 109.50409 * 297.56383 * 11 10 8 43 43 H 1.08996 * 109.46465 * 180.80442 * 12 11 10 44 44 H 1.09004 * 109.45131 * 60.83038 * 12 11 10 45 45 H 1.09004 * 109.47131 * 50.00001 * 14 13 12 46 46 H 1.08994 * 109.47471 * 289.99751 * 14 13 12 47 47 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 48 48 H 0.97005 * 120.00014 * 180.02562 * 21 20 18 49 49 H 1.08997 * 109.46379 * 58.26863 * 26 13 12 50 50 H 1.09000 * 109.46577 * 178.24622 * 26 13 12 51 51 H 1.09001 * 109.50668 * 299.24264 * 27 26 13 52 52 H 1.08995 * 109.50406 * 179.11983 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.1999 -2.0782 0.9887 6 6 2.7012 -2.6833 2.2746 7 8 2.8750 -1.9810 3.2480 8 7 2.9563 -4.0049 2.3431 9 6 2.7458 -4.8535 1.1675 10 6 3.4431 -4.5932 3.5934 11 6 2.4541 -5.6572 4.0774 12 6 2.9968 -6.3094 5.3510 13 7 4.3026 -6.9202 5.0715 14 6 4.7906 -7.6743 6.2339 15 6 5.9990 -8.4826 5.8370 16 8 6.4133 -8.4348 4.6980 17 7 6.6231 -9.2539 6.7492 18 6 7.7259 -9.9849 6.3896 19 1 8.0946 -9.9422 5.3754 20 6 8.3689 -10.7804 7.3298 21 7 9.4262 -11.4806 6.9852 22 14 7.7306 -10.8547 9.0838 23 1 6.7357 -11.9507 9.2025 24 1 8.8614 -11.1101 10.0117 25 1 7.0871 -9.5623 9.4315 26 6 5.2820 -5.9103 4.6506 27 6 4.8076 -5.2463 3.3559 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4423 0.0005 33 1 1.6769 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.9318 -2.2469 0.1987 36 1 1.2536 -2.5434 0.7125 37 1 1.7249 -5.2354 1.1733 38 1 2.9096 -4.2680 0.2628 39 1 3.4463 -5.6883 1.1918 40 1 3.5388 -3.8140 4.3495 41 1 2.3290 -6.4160 3.3050 42 1 1.4921 -5.1906 4.2890 43 1 2.3017 -7.0774 5.6903 44 1 3.1086 -5.5523 6.1272 45 1 4.0064 -8.3434 6.5883 46 1 5.0629 -6.9804 7.0291 47 1 6.2920 -9.2920 7.6601 48 1 9.8749 -12.0364 7.6415 49 1 5.3830 -5.1553 5.4301 50 1 6.2467 -6.3885 4.4809 51 1 4.7194 -5.9986 2.5721 52 1 5.5270 -4.4859 3.0521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265188243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:48 Heat of formation + Delta-G solvation = -103.729116 kcal Electronic energy + Delta-G solvation = -30226.425001 eV Core-core repulsion = 26033.538799 eV Total energy + Delta-G solvation = -4192.886202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52089 -39.22109 -38.44414 -37.57595 -35.68608 -33.95732 -33.25278 -32.32532 -31.63182 -30.77845 -28.56829 -27.67984 -27.43969 -26.68152 -24.36555 -23.13934 -22.62369 -21.75669 -20.00234 -19.35923 -19.32470 -18.26865 -17.62085 -17.03597 -16.56744 -16.35268 -15.95792 -15.46489 -15.13925 -15.00339 -14.88476 -14.65018 -14.11199 -14.05679 -13.64047 -13.51314 -13.40664 -13.20872 -13.17009 -13.01481 -12.86259 -12.63147 -12.60200 -12.46573 -12.34506 -12.21447 -11.86470 -11.81236 -11.65996 -11.23595 -11.16968 -11.15569 -11.09737 -10.63823 -10.57666 -10.48966 -10.07535 -9.97445 -9.86547 -9.53008 -8.83842 -8.54999 -8.17454 -7.94058 -6.30803 -3.82072 2.37100 2.41709 3.03144 3.07314 3.15601 3.45344 3.74413 3.92922 4.10800 4.20281 4.46559 4.55698 4.63244 4.66876 4.72101 4.77128 4.80260 4.84225 4.89024 5.04213 5.15630 5.17454 5.22103 5.25885 5.26738 5.34160 5.36321 5.40725 5.40975 5.53895 5.62057 5.63201 5.69017 5.74110 5.76872 5.78861 5.91409 5.94254 5.96803 6.08720 6.23827 6.36220 6.45521 6.72771 7.11479 7.21307 7.34388 7.59281 7.95689 8.15091 8.60817 8.95741 9.43143 9.84154 10.82298 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033777 B = 0.001770 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.761427 B =15815.089766 C =15974.927229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.358 6.358 5 C 0.047 3.953 6 C 0.514 3.486 7 O -0.521 6.521 8 N -0.609 5.609 9 C 0.070 3.930 10 C 0.138 3.862 11 C -0.120 4.120 12 C 0.058 3.942 13 N -0.516 5.516 14 C 0.043 3.957 15 C 0.453 3.547 16 O -0.559 6.559 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.054 3.946 27 C -0.119 4.119 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.032 0.968 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.025 0.975 50 H 0.108 0.892 51 H 0.078 0.922 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.476 18.994 -12.141 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.277 6.277 5 C -0.033 4.033 6 C 0.301 3.699 7 O -0.396 6.396 8 N -0.343 5.343 9 C -0.073 4.073 10 C 0.036 3.964 11 C -0.158 4.158 12 C -0.071 4.071 13 N -0.240 5.240 14 C -0.088 4.088 15 C 0.239 3.761 16 O -0.441 6.441 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.074 4.074 27 C -0.157 4.157 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.050 0.950 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.043 0.957 50 H 0.126 0.874 51 H 0.096 0.904 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.951 19.042 -12.557 29.655 hybrid contribution -0.405 0.043 1.812 1.857 sum -19.356 19.085 -10.745 29.229 Atomic orbital electron populations 1.22317 0.95810 1.02403 1.02839 1.22179 0.93801 0.94098 0.87822 1.21854 1.02022 0.94182 1.02651 1.88075 1.86579 1.17762 1.35269 1.22278 1.01014 0.84065 0.95975 1.20253 0.78043 0.81919 0.89731 1.90724 1.51094 1.60054 1.37685 1.47871 1.66268 1.07009 1.13184 1.21881 1.02275 0.96112 0.86989 1.21269 0.93832 0.95713 0.85614 1.21882 0.97885 0.97731 0.98331 1.22057 0.91648 0.97516 0.95902 1.61532 1.02265 1.25962 1.34273 1.21869 0.97856 0.97275 0.91826 1.19649 0.86047 0.84023 0.86395 1.90517 1.67144 1.66872 1.19588 1.42222 1.28090 1.42278 1.10501 1.19421 1.02990 1.20809 1.00058 0.86275 1.25029 0.96114 0.96618 0.98378 1.69622 1.19201 1.28234 1.35126 0.86678 0.79336 0.78626 0.84781 1.19624 1.20219 1.19525 1.22229 0.97923 0.92366 0.94846 1.21891 0.95092 0.99529 0.99225 0.91549 0.91470 0.92514 0.92048 0.91822 0.91108 0.91569 0.90294 0.90419 0.92260 0.91307 0.89744 0.88429 0.90508 0.91492 0.90375 0.94951 0.89176 0.93316 0.79727 0.91641 0.95688 0.87364 0.90353 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 9.53 37.16 0.35 -0.67 16 2 C 0.08 0.55 3.34 -26.73 -0.09 0.46 16 3 C -0.15 -0.95 9.56 37.16 0.36 -0.60 16 4 O -0.36 -3.84 9.52 -55.14 -0.52 -4.37 16 5 C 0.05 0.40 4.78 36.01 0.17 0.57 16 6 C 0.51 6.19 7.75 -10.99 -0.09 6.11 16 7 O -0.52 -8.67 15.83 -14.36 -0.23 -8.89 16 8 N -0.61 -6.29 2.77 -173.79 -0.48 -6.77 16 9 C 0.07 0.48 9.26 59.85 0.55 1.03 16 10 C 0.14 1.66 2.59 -67.81 -0.18 1.48 16 11 C -0.12 -1.30 5.41 -26.65 -0.14 -1.45 16 12 C 0.06 0.70 5.46 -3.84 -0.02 0.68 16 13 N -0.52 -8.04 4.40 -236.12 -1.04 -9.08 16 14 C 0.04 0.72 5.45 -4.97 -0.03 0.69 16 15 C 0.45 10.10 7.46 -10.98 -0.08 10.02 16 16 O -0.56 -14.50 13.90 5.55 0.08 -14.42 16 17 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 18 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 19 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 22 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.41 6.52 56.52 0.37 -5.05 16 26 C 0.05 0.86 5.10 -3.84 -0.02 0.84 16 27 C -0.12 -1.57 5.40 -26.65 -0.14 -1.71 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 31 H 0.06 0.32 7.79 -51.93 -0.40 -0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.49 7.34 -51.93 -0.38 0.11 16 36 H 0.08 0.48 7.84 -51.93 -0.41 0.07 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.32 6.44 -51.93 -0.33 -0.02 16 39 H 0.08 0.63 6.38 -51.93 -0.33 0.30 16 40 H 0.10 1.38 6.90 -51.93 -0.36 1.02 16 41 H 0.08 0.83 7.60 -51.93 -0.39 0.43 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 44 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 1.29 7.99 -51.93 -0.41 0.88 16 46 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 47 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.11 2.08 5.78 -51.93 -0.30 1.78 16 51 H 0.08 1.05 6.58 -51.93 -0.34 0.70 16 52 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 408.21 15.07 6.15 6.15 Total: -1.00 -35.37 408.21 -8.57 -43.94 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.93 Total: 7.89 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 0.40 Total: 9.81 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.80 Total: -54.73 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.68 Total: -27.68 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.37 -8.57 -43.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265188243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.785 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds