Wall clock time and date at job start Wed Apr 1 2020 00:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 O 1.42909 * 109.46705 * 119.99977 * 2 1 3 5 5 C 1.42897 * 113.99708 * 89.99653 * 4 2 1 6 6 C 1.50700 * 109.47141 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99890 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00379 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00130 * 359.97438 * 8 6 5 10 10 C 1.46499 * 120.00024 * 180.02562 * 8 6 5 11 11 C 1.53118 * 109.52490 * 120.00048 * 10 8 6 12 12 C 1.53036 * 109.28068 * 177.61960 * 11 10 8 13 13 N 1.46843 * 109.52229 * 300.82162 * 12 11 10 14 14 C 1.46902 * 110.99818 * 185.83572 * 13 12 11 15 15 C 1.50702 * 109.47027 * 169.99758 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00042 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 89.99599 * 22 20 18 24 24 H 1.48494 * 109.47201 * 209.99761 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99936 * 22 20 18 26 26 C 1.46843 * 111.20082 * 61.74351 * 13 12 11 27 27 C 1.53038 * 109.52070 * 298.25410 * 26 13 12 28 28 H 1.09002 * 109.46976 * 300.00082 * 1 2 3 29 29 H 1.09006 * 109.46543 * 59.99919 * 1 2 3 30 30 H 1.08993 * 109.47616 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46953 * 239.99633 * 2 1 3 32 32 H 1.09002 * 109.46679 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47396 * 299.99575 * 3 2 1 34 34 H 1.09002 * 109.47205 * 60.00058 * 3 2 1 35 35 H 1.09002 * 109.47597 * 60.00194 * 5 4 2 36 36 H 1.09002 * 109.47835 * 299.99961 * 5 4 2 37 37 H 1.08998 * 109.46821 * 270.00537 * 9 8 6 38 38 H 1.09004 * 109.46846 * 30.00177 * 9 8 6 39 39 H 1.09000 * 109.47182 * 149.99869 * 9 8 6 40 40 H 1.08996 * 109.52259 * 359.87125 * 10 8 6 41 41 H 1.08995 * 109.50555 * 57.67842 * 11 10 8 42 42 H 1.08995 * 109.50409 * 297.56383 * 11 10 8 43 43 H 1.08996 * 109.46465 * 180.80442 * 12 11 10 44 44 H 1.09004 * 109.45131 * 60.83038 * 12 11 10 45 45 H 1.09004 * 109.47131 * 50.00001 * 14 13 12 46 46 H 1.08994 * 109.47471 * 289.99751 * 14 13 12 47 47 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 48 48 H 0.97005 * 120.00014 * 180.02562 * 21 20 18 49 49 H 1.08997 * 109.46379 * 58.26863 * 26 13 12 50 50 H 1.09000 * 109.46577 * 178.24622 * 26 13 12 51 51 H 1.09001 * 109.50668 * 299.24264 * 27 26 13 52 52 H 1.08995 * 109.50406 * 179.11983 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.1999 -2.0782 0.9887 6 6 2.7012 -2.6833 2.2746 7 8 2.8750 -1.9810 3.2480 8 7 2.9563 -4.0049 2.3431 9 6 2.7458 -4.8535 1.1675 10 6 3.4431 -4.5932 3.5934 11 6 2.4541 -5.6572 4.0774 12 6 2.9968 -6.3094 5.3510 13 7 4.3026 -6.9202 5.0715 14 6 4.7906 -7.6743 6.2339 15 6 5.9990 -8.4826 5.8370 16 8 6.4133 -8.4348 4.6980 17 7 6.6231 -9.2539 6.7492 18 6 7.7259 -9.9849 6.3896 19 1 8.0946 -9.9422 5.3754 20 6 8.3689 -10.7804 7.3298 21 7 9.4262 -11.4806 6.9852 22 14 7.7306 -10.8547 9.0838 23 1 6.7357 -11.9507 9.2025 24 1 8.8614 -11.1101 10.0117 25 1 7.0871 -9.5623 9.4315 26 6 5.2820 -5.9103 4.6506 27 6 4.8076 -5.2463 3.3559 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4423 0.0005 33 1 1.6769 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.9318 -2.2469 0.1987 36 1 1.2536 -2.5434 0.7125 37 1 1.7249 -5.2354 1.1733 38 1 2.9096 -4.2680 0.2628 39 1 3.4463 -5.6883 1.1918 40 1 3.5388 -3.8140 4.3495 41 1 2.3290 -6.4160 3.3050 42 1 1.4921 -5.1906 4.2890 43 1 2.3017 -7.0774 5.6903 44 1 3.1086 -5.5523 6.1272 45 1 4.0064 -8.3434 6.5883 46 1 5.0629 -6.9804 7.0291 47 1 6.2920 -9.2920 7.6601 48 1 9.8749 -12.0364 7.6415 49 1 5.3830 -5.1553 5.4301 50 1 6.2467 -6.3885 4.4809 51 1 4.7194 -5.9986 2.5721 52 1 5.5270 -4.4859 3.0521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265188243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:47 Heat of formation + Delta-G solvation = -130.050117 kcal Electronic energy + Delta-G solvation = -30227.566365 eV Core-core repulsion = 26033.538799 eV Total energy + Delta-G solvation = -4194.027566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.44855 -40.57011 -39.45659 -38.73217 -36.74178 -35.90086 -33.93577 -33.73036 -33.23656 -31.84318 -29.57728 -28.46051 -28.02477 -27.72810 -26.05168 -24.23260 -23.79240 -22.26130 -21.25932 -20.97790 -20.21822 -20.18802 -18.36081 -17.88857 -17.64311 -17.33335 -17.06800 -16.86422 -16.44345 -16.32741 -15.74459 -15.60258 -15.44471 -15.16530 -14.97322 -14.68857 -14.53748 -14.35576 -14.06256 -14.01711 -13.82346 -13.79232 -13.51919 -13.25245 -13.15021 -13.06082 -12.93164 -12.87904 -12.73664 -12.41058 -12.36409 -12.31414 -12.16638 -11.98057 -11.71268 -11.64699 -11.56190 -11.41365 -10.80052 -10.64590 -10.32862 -10.21306 -9.68667 -9.22251 -8.39858 -6.00082 1.30980 1.36022 1.44676 1.50185 1.66661 1.98157 2.23782 2.61401 2.84883 3.15262 3.22787 3.49368 3.77674 3.83811 3.98971 4.00465 4.09011 4.10596 4.13001 4.22809 4.25105 4.29548 4.31231 4.35220 4.42001 4.47623 4.51911 4.62423 4.67703 4.71768 4.75358 4.81136 4.90060 4.91451 4.93872 4.94636 4.96148 5.07419 5.12921 5.28875 5.30565 5.33264 5.47742 5.54772 5.90883 6.02423 6.13854 6.20769 6.38246 6.61809 6.90582 7.09856 7.42262 7.99482 8.77718 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033777 B = 0.001770 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.761427 B =15815.089766 C =15974.927229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.072 3.928 3 C -0.151 4.151 4 O -0.396 6.396 5 C 0.050 3.950 6 C 0.506 3.494 7 O -0.578 6.578 8 N -0.604 5.604 9 C 0.063 3.937 10 C 0.144 3.856 11 C -0.111 4.111 12 C 0.058 3.942 13 N -0.530 5.530 14 C 0.053 3.947 15 C 0.452 3.548 16 O -0.602 6.602 17 N -0.593 5.593 18 C -0.325 4.325 19 H 0.056 0.944 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.963 3.037 23 H -0.256 1.256 24 H -0.277 1.277 25 H -0.233 1.233 26 C 0.058 3.942 27 C -0.109 4.109 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.038 0.962 45 H 0.125 0.875 46 H 0.073 0.927 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.028 0.972 50 H 0.066 0.934 51 H 0.076 0.924 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.972 19.527 -11.658 32.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 C -0.208 4.208 4 O -0.315 6.315 5 C -0.029 4.029 6 C 0.295 3.705 7 O -0.458 6.458 8 N -0.337 5.337 9 C -0.078 4.078 10 C 0.040 3.960 11 C -0.149 4.149 12 C -0.070 4.070 13 N -0.256 5.256 14 C -0.078 4.078 15 C 0.240 3.760 16 O -0.486 6.486 17 N -0.235 5.235 18 C -0.455 4.455 19 H 0.074 0.926 20 C -0.213 4.213 21 N -0.576 5.576 22 Si 0.784 3.216 23 H -0.181 1.181 24 H -0.202 1.202 25 H -0.157 1.157 26 C -0.071 4.071 27 C -0.147 4.147 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.056 0.944 45 H 0.143 0.857 46 H 0.091 0.909 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.046 0.954 50 H 0.084 0.916 51 H 0.095 0.905 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.484 19.573 -12.113 32.177 hybrid contribution 0.728 -0.095 1.481 1.653 sum -21.756 19.478 -10.632 31.076 Atomic orbital electron populations 1.22301 0.94973 1.02830 1.02972 1.22419 0.94507 0.94062 0.87533 1.21897 1.01495 0.94359 1.03070 1.88042 1.87111 1.18926 1.37456 1.22392 1.02976 0.83352 0.94211 1.21000 0.77177 0.81940 0.90386 1.90694 1.53787 1.61409 1.39873 1.47932 1.65175 1.07073 1.13561 1.22160 1.03330 0.95829 0.86491 1.21039 0.93470 0.95273 0.86204 1.21823 0.97869 0.97262 0.97969 1.22178 0.89874 0.98246 0.96710 1.61505 1.03426 1.26329 1.34307 1.21828 0.95769 0.97563 0.92636 1.20862 0.86759 0.82910 0.85462 1.90509 1.68557 1.67833 1.21721 1.42051 1.27294 1.42464 1.11735 1.18996 1.05339 1.23076 0.98055 0.92555 1.26076 0.95820 0.95209 1.04227 1.69804 1.21033 1.29279 1.37479 0.85384 0.79015 0.80665 0.76577 1.18052 1.20205 1.15672 1.22054 0.96503 0.92261 0.96254 1.21758 0.95977 0.99132 0.97859 0.93186 0.89549 0.91931 0.89792 0.92682 0.88761 0.93067 0.87656 0.87469 0.90157 0.88601 0.90458 0.90768 0.89911 0.90008 0.88174 0.94355 0.85702 0.90937 0.77602 0.91234 0.95362 0.91610 0.90527 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.53 71.98 0.69 -0.98 16 2 C 0.07 0.87 3.34 30.59 0.10 0.97 16 3 C -0.15 -1.77 9.56 71.98 0.69 -1.09 16 4 O -0.40 -8.08 9.52 -129.94 -1.24 -9.31 16 5 C 0.05 0.73 4.78 71.24 0.34 1.07 16 6 C 0.51 11.74 7.75 87.66 0.68 12.42 16 7 O -0.58 -19.66 15.83 15.99 0.25 -19.41 16 8 N -0.60 -11.58 2.77 -822.13 -2.28 -13.86 16 9 C 0.06 0.69 9.26 127.77 1.18 1.87 16 10 C 0.14 3.33 2.59 45.07 0.12 3.44 16 11 C -0.11 -2.14 5.41 30.65 0.17 -1.98 16 12 C 0.06 1.23 5.46 86.33 0.47 1.70 16 13 N -0.53 -15.74 4.40 -900.95 -3.96 -19.70 16 14 C 0.05 1.63 5.45 85.56 0.47 2.10 16 15 C 0.45 20.26 7.46 87.66 0.65 20.91 16 16 O -0.60 -32.67 13.90 -3.07 -0.04 -32.71 16 17 N -0.59 -27.91 5.09 -306.98 -1.56 -29.47 16 18 C -0.33 -19.02 10.16 84.04 0.85 -18.17 16 19 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 20 C -0.01 -0.83 5.50 84.92 0.47 -0.36 16 21 N -0.94 -56.46 13.96 21.66 0.30 -56.16 16 22 Si 0.96 38.93 27.74 68.60 1.90 40.83 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.23 -7.98 6.52 99.48 0.65 -7.34 16 26 C 0.06 1.85 5.10 86.33 0.44 2.29 16 27 C -0.11 -2.89 5.40 30.65 0.17 -2.73 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.52 7.87 -2.39 -0.02 0.50 16 31 H 0.08 0.62 7.79 -2.39 -0.02 0.60 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 0.97 7.34 -2.39 -0.02 0.95 16 36 H 0.11 0.93 7.84 -2.39 -0.02 0.91 16 37 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.10 0.53 6.44 -2.39 -0.02 0.52 16 39 H 0.08 0.99 6.38 -2.39 -0.02 0.98 16 40 H 0.07 2.11 6.90 -2.39 -0.02 2.09 16 41 H 0.08 1.54 7.60 -2.39 -0.02 1.52 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.10 1.75 8.01 -2.39 -0.02 1.73 16 44 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.13 3.04 7.99 -2.38 -0.02 3.02 16 46 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 47 H 0.39 15.17 5.76 -92.71 -0.53 14.64 16 48 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 49 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.07 2.68 5.78 -2.39 -0.01 2.66 16 51 H 0.08 2.05 6.58 -2.39 -0.02 2.04 16 52 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -85.43 408.21 1.17 -84.26 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.32 Total: 34.05 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 7.48 Total: 21.48 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -7.50 Total: -119.18 kcal Atomic # 8 Polarization: -60.41 SS G_CDS: -1.03 Total: -61.43 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.83 kcal Total: -85.43 1.17 -84.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265188243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.795 kcal (2) G-P(sol) polarization free energy of solvation -85.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds