Wall clock time and date at job start Wed Apr 1 2020 00:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47448 * 2 1 4 4 O 1.42902 * 109.47154 * 120.00110 * 2 1 3 5 5 C 1.42897 * 114.00309 * 150.00067 * 4 2 1 6 6 C 1.52999 * 109.47174 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46969 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.46944 * 179.97438 * 7 6 5 9 9 O 1.21276 * 119.99900 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99591 * 179.97438 * 8 7 6 11 11 C 1.46509 * 119.99609 * 179.97438 * 10 8 7 12 12 H 1.08991 * 110.87416 * 37.39609 * 11 10 8 13 13 C 1.55142 * 110.98933 * 273.55051 * 11 10 8 14 14 C 1.54323 * 103.01716 * 206.25399 * 13 11 10 15 15 N 1.47445 * 107.23173 * 22.28926 * 14 13 11 16 16 C 1.46899 * 111.00339 * 123.25791 * 15 14 13 17 17 C 1.50698 * 109.46987 * 69.86847 * 16 15 14 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31414 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99969 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47459 * 59.99812 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47211 * 300.00250 * 24 22 20 28 28 C 1.47847 * 108.56663 * 0.98282 * 15 14 13 29 29 H 1.09004 * 109.47327 * 299.99862 * 1 2 3 30 30 H 1.09000 * 109.47166 * 59.99985 * 1 2 3 31 31 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47189 * 239.99896 * 2 1 3 33 33 H 1.08995 * 109.47696 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46949 * 300.00148 * 3 2 1 35 35 H 1.09004 * 109.46744 * 59.99781 * 3 2 1 36 36 H 1.08997 * 109.47064 * 59.99807 * 5 4 2 37 37 H 1.09002 * 109.47197 * 299.99943 * 5 4 2 38 38 H 1.08997 * 109.47226 * 59.99975 * 6 5 4 39 39 H 1.08999 * 109.47238 * 299.99346 * 6 5 4 40 40 H 1.08997 * 109.47323 * 59.99843 * 7 6 5 41 41 H 1.08997 * 109.46930 * 299.99452 * 7 6 5 42 42 H 0.97000 * 120.00402 * 0.02562 * 10 8 7 43 43 H 1.08998 * 110.70336 * 87.87425 * 13 11 10 44 44 H 1.08999 * 110.71150 * 324.63726 * 13 11 10 45 45 H 1.09000 * 109.88972 * 262.88348 * 14 13 11 46 46 H 1.09001 * 109.88433 * 141.68881 * 14 13 11 47 47 H 1.09003 * 109.46477 * 309.87337 * 16 15 14 48 48 H 1.08993 * 109.47002 * 189.87663 * 16 15 14 49 49 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 50 50 H 0.96999 * 119.99863 * 180.02562 * 23 22 20 51 51 H 1.09006 * 110.37063 * 94.73699 * 28 15 14 52 52 H 1.09000 * 110.37539 * 217.07484 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3245 0.9887 6 6 3.6759 -2.0081 2.2946 7 6 5.0249 -2.7044 2.1041 8 6 5.4291 -3.3772 3.3906 9 8 4.7089 -3.3071 4.3638 10 7 6.5905 -4.0576 3.4592 11 6 6.9836 -4.7112 4.7101 12 1 6.1166 -5.1368 5.2151 13 6 7.7391 -3.7247 5.6390 14 6 8.6211 -4.6586 6.4942 15 7 8.7835 -5.9161 5.7416 16 6 10.2042 -6.2192 5.5230 17 6 10.8446 -6.5968 6.8339 18 8 10.1826 -6.6124 7.8501 19 7 12.1528 -6.9181 6.8767 20 6 12.7369 -7.2562 8.0702 21 1 12.1475 -7.2694 8.9752 22 6 14.0869 -7.5820 8.1154 23 7 14.8040 -7.5655 7.0143 24 14 14.8824 -8.0433 9.7413 25 1 14.2056 -9.2405 10.3016 26 1 16.3199 -8.3443 9.5213 27 1 14.7544 -6.9113 10.6939 28 6 8.0644 -5.7914 4.4558 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 4.0199 -0.5874 0.7125 37 1 3.1809 -2.0707 0.1987 38 1 2.9221 -2.7451 2.5712 39 1 3.7612 -1.2616 3.0843 40 1 5.7786 -1.9671 1.8277 41 1 4.9401 -3.4509 1.3144 42 1 7.1663 -4.1140 2.6807 43 1 7.0389 -3.1740 6.2671 44 1 8.3551 -3.0406 5.0553 45 1 8.1336 -4.8580 7.4485 46 1 9.5948 -4.1983 6.6616 47 1 10.7042 -5.3412 5.1140 48 1 10.2950 -7.0486 4.8219 49 1 12.6822 -6.9060 6.0640 50 1 15.7464 -7.7932 7.0458 51 1 8.7464 -5.4681 3.6694 52 1 7.5978 -6.7395 4.1885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265318548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:36 Heat of formation + Delta-G solvation = -154.549973 kcal Electronic energy + Delta-G solvation = -28745.587686 eV Core-core repulsion = 24550.497726 eV Total energy + Delta-G solvation = -4195.089959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20811 -40.35483 -39.39355 -38.99023 -36.01182 -35.39138 -35.12955 -33.29992 -33.05804 -32.06913 -29.80213 -28.48575 -28.10064 -27.28932 -25.90341 -23.22351 -22.41982 -22.26969 -21.93203 -21.25299 -20.78511 -19.83458 -18.40705 -17.74944 -17.67533 -17.37608 -17.07705 -16.84257 -16.47708 -16.14531 -15.93417 -15.76118 -15.57615 -15.22175 -14.89206 -14.69836 -14.45678 -14.31162 -13.98481 -13.79625 -13.63633 -13.54270 -13.30050 -13.26676 -13.01532 -12.94911 -12.74649 -12.71199 -12.46863 -12.42229 -12.37916 -12.34626 -12.13650 -12.11341 -11.81089 -11.78812 -11.54464 -11.48087 -10.92913 -10.46854 -10.31702 -10.11053 -9.98914 -9.23528 -8.45360 -5.93618 1.40070 1.41919 1.52428 1.65691 2.00488 2.08279 2.30504 2.74150 2.94100 3.21574 3.33007 3.53266 3.73644 3.77573 3.96162 4.00758 4.02548 4.14768 4.18154 4.25727 4.28759 4.31829 4.33792 4.43934 4.45836 4.53243 4.54557 4.55832 4.65151 4.72343 4.75060 4.83201 4.88786 4.92896 4.95237 4.95749 5.00779 5.14147 5.17350 5.27373 5.31662 5.34006 5.41945 5.47155 5.85883 5.99965 6.11435 6.39071 6.58240 6.63169 7.15079 7.29968 7.58832 8.15654 8.71818 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.044466 B = 0.001328 C = 0.001320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.548425 B =21077.947026 C =21211.854711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 C -0.174 4.174 4 O -0.412 6.412 5 C 0.064 3.936 6 C -0.102 4.102 7 C -0.125 4.125 8 C 0.509 3.491 9 O -0.588 6.588 10 N -0.706 5.706 11 C 0.145 3.855 12 H 0.079 0.921 13 C -0.141 4.141 14 C 0.062 3.938 15 N -0.529 5.529 16 C 0.056 3.944 17 C 0.438 3.562 18 O -0.619 6.619 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.046 3.954 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.420 0.580 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.115 0.885 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.083 0.917 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.588 14.500 -23.894 34.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.333 6.333 5 C -0.013 4.013 6 C -0.140 4.140 7 C -0.164 4.164 8 C 0.297 3.703 9 O -0.467 6.467 10 N -0.359 5.359 11 C 0.038 3.962 12 H 0.097 0.903 13 C -0.181 4.181 14 C -0.066 4.066 15 N -0.254 5.254 16 C -0.075 4.075 17 C 0.225 3.775 18 O -0.504 6.504 19 N -0.212 5.212 20 C -0.464 4.464 21 H 0.094 0.906 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.193 1.193 27 H -0.199 1.199 28 C -0.082 4.082 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.258 0.742 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.093 0.907 48 H 0.133 0.867 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.101 0.899 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.629 14.070 -22.123 33.361 hybrid contribution 1.536 0.288 0.108 1.566 sum -19.093 14.358 -22.015 32.486 Atomic orbital electron populations 1.21900 0.93406 1.02599 1.02944 1.22271 0.95376 0.92816 0.87893 1.22298 1.01626 0.96412 1.02826 1.87919 1.37620 1.70544 1.37212 1.22585 0.85448 0.96036 0.97183 1.21152 0.96240 0.99483 0.97141 1.21551 0.98342 1.01979 0.94549 1.21346 0.80169 0.77858 0.90890 1.90733 1.53749 1.61890 1.40376 1.45767 1.22422 1.53483 1.14227 1.21776 0.96930 0.92109 0.85354 0.90329 1.23104 0.98516 0.97960 0.98473 1.22521 0.98643 0.88107 0.97373 1.63094 1.10380 1.34097 1.17795 1.21942 0.88564 1.02702 0.94308 1.20879 0.82261 0.82590 0.91725 1.90503 1.63418 1.58676 1.37841 1.41899 1.08418 1.60658 1.10199 1.19606 0.93550 1.44938 0.88314 0.90600 1.25964 0.96180 0.96792 1.02025 1.69655 1.08942 1.48866 1.28583 0.85040 0.77327 0.78716 0.77565 1.19851 1.19346 1.19878 1.23280 0.94889 0.99354 0.90677 0.92854 0.89373 0.92418 0.90770 0.92321 0.90062 0.92964 0.91797 0.91434 0.92584 0.92827 0.85702 0.85405 0.74175 0.91479 0.89542 0.92925 0.93932 0.90710 0.86670 0.76940 0.91311 0.89914 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.56 71.98 0.69 -0.80 16 2 C 0.07 0.80 3.34 30.59 0.10 0.91 16 3 C -0.17 -1.61 9.53 71.98 0.69 -0.92 16 4 O -0.41 -6.87 9.99 -148.98 -1.49 -8.36 16 5 C 0.06 0.71 5.75 71.98 0.41 1.12 16 6 C -0.10 -1.52 4.87 30.59 0.15 -1.37 16 7 C -0.12 -1.13 5.70 29.85 0.17 -0.96 16 8 C 0.51 9.30 7.83 87.66 0.69 9.99 16 9 O -0.59 -17.36 15.73 -3.02 -0.05 -17.41 16 10 N -0.71 -10.25 5.23 -435.99 -2.28 -12.53 16 11 C 0.14 3.14 3.31 46.37 0.15 3.29 16 12 H 0.08 2.16 7.73 -2.39 -0.02 2.14 16 13 C -0.14 -3.49 6.64 31.78 0.21 -3.28 16 14 C 0.06 2.03 5.65 86.65 0.49 2.52 16 15 N -0.53 -16.79 4.85 -890.08 -4.32 -21.11 16 16 C 0.06 1.86 5.03 85.56 0.43 2.29 16 17 C 0.44 20.88 7.43 87.66 0.65 21.53 16 18 O -0.62 -34.90 15.12 -3.07 -0.05 -34.95 16 19 N -0.57 -29.31 5.29 -306.98 -1.62 -30.93 16 20 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 23 N -0.92 -49.24 13.05 21.66 0.28 -48.95 16 24 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 28 C 0.05 0.95 6.31 86.77 0.55 1.49 16 29 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.56 7.79 -2.39 -0.02 0.54 16 33 H 0.06 0.51 7.87 -2.39 -0.02 0.49 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.06 0.51 7.87 -2.39 -0.02 0.49 16 37 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 38 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 39 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 40 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.42 2.78 8.52 -92.71 -0.79 2.00 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.04 1.49 7.31 -2.39 -0.02 1.48 16 47 H 0.08 2.13 7.96 -2.39 -0.02 2.11 16 48 H 0.12 3.23 8.07 -2.39 -0.02 3.21 16 49 H 0.40 19.00 7.90 -92.71 -0.73 18.26 16 50 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 51 H 0.08 1.21 7.67 -2.38 -0.02 1.20 16 52 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -79.40 424.24 -1.45 -80.85 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -0.61 Total: 30.79 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 6.66 Total: 17.47 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -7.94 Total: -113.53 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -1.58 Total: -60.72 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -79.40 -1.45 -80.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265318548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.703 kcal (2) G-P(sol) polarization free energy of solvation -79.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds