Wall clock time and date at job start Wed Apr 1 2020 00:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47201 * 2 1 4 4 O 1.42899 * 109.46799 * 120.00509 * 2 1 3 5 5 C 1.42906 * 113.99928 * 90.00111 * 4 2 1 6 6 C 1.53000 * 109.46560 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46550 * 179.97438 * 6 5 4 8 8 C 1.50709 * 109.47193 * 179.97438 * 7 6 5 9 9 O 1.21277 * 119.99544 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00048 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99732 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.64777 * 323.30511 * 11 10 8 13 13 C 1.54596 * 110.72526 * 86.46252 * 11 10 8 14 14 C 1.53989 * 105.14316 * 140.31381 * 13 11 10 15 15 N 1.47894 * 107.05835 * 1.22251 * 14 13 11 16 16 C 1.46902 * 111.00050 * 214.15441 * 15 14 13 17 17 C 1.50699 * 109.46892 * 176.63888 * 16 15 14 18 18 O 1.21289 * 120.00552 * 6.13859 * 17 16 15 19 19 N 1.34777 * 119.99670 * 186.13614 * 17 16 15 20 20 C 1.37100 * 120.00175 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00005 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00031 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99804 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00323 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47465 * 89.99821 * 24 22 20 26 26 H 1.48504 * 109.47127 * 210.00471 * 24 22 20 27 27 H 1.48504 * 109.47051 * 329.99756 * 24 22 20 28 28 C 1.48528 * 105.82068 * 334.67131 * 15 14 13 29 29 H 1.09002 * 109.46677 * 300.00020 * 1 2 3 30 30 H 1.08999 * 109.47032 * 59.99333 * 1 2 3 31 31 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46677 * 239.99980 * 2 1 3 33 33 H 1.09005 * 109.46518 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47672 * 300.00275 * 3 2 1 35 35 H 1.09003 * 109.46823 * 60.00958 * 3 2 1 36 36 H 1.08997 * 109.47202 * 59.99677 * 5 4 2 37 37 H 1.09000 * 109.46558 * 299.99432 * 5 4 2 38 38 H 1.08997 * 109.47516 * 60.00004 * 6 5 4 39 39 H 1.09000 * 109.47331 * 299.99093 * 6 5 4 40 40 H 1.08999 * 109.47992 * 59.99968 * 7 6 5 41 41 H 1.09006 * 109.47500 * 299.99402 * 7 6 5 42 42 H 0.96998 * 120.00315 * 0.02562 * 10 8 7 43 43 H 1.08998 * 110.30463 * 21.39173 * 13 11 10 44 44 H 1.09004 * 110.38801 * 259.27818 * 13 11 10 45 45 H 1.08995 * 109.91431 * 241.86889 * 14 13 11 46 46 H 1.09007 * 110.08204 * 120.66963 * 14 13 11 47 47 H 1.08997 * 109.47090 * 56.64013 * 16 15 14 48 48 H 1.09001 * 109.46906 * 296.64200 * 16 15 14 49 49 H 0.97006 * 120.00292 * 0.02562 * 19 17 16 50 50 H 0.96996 * 119.99728 * 179.97438 * 23 22 20 51 51 H 1.09005 * 110.66641 * 157.64500 * 28 15 14 52 52 H 1.09000 * 110.66827 * 280.76869 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2000 -2.0783 0.9884 6 6 2.7090 -2.6926 2.2940 7 6 2.9158 -4.1965 2.1033 8 6 3.4177 -4.8017 3.3891 9 8 3.5931 -4.0991 4.3619 10 7 3.6715 -6.1235 3.4578 11 6 4.1599 -6.7115 4.7075 12 1 4.8421 -6.0280 5.2131 13 6 2.9800 -7.0902 5.6318 14 6 3.3796 -8.4367 6.2630 15 7 4.7223 -8.7773 5.7450 16 6 4.8694 -10.2293 5.5779 17 6 6.2160 -10.5314 4.9725 18 8 7.0215 -9.6394 4.8094 19 7 6.5253 -11.7928 4.6125 20 6 7.7505 -12.0678 4.0622 21 1 8.4680 -11.2737 3.9176 22 6 8.0691 -13.3682 3.6905 23 7 9.2434 -13.6317 3.1625 24 14 6.8278 -14.7416 3.9398 25 1 5.9789 -14.8677 2.7280 26 1 7.5452 -16.0201 4.1770 27 1 5.9726 -14.4290 5.1129 28 6 4.8430 -8.0765 4.4410 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4423 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 2.9319 -2.2468 0.1985 37 1 1.2537 -2.5434 0.7123 38 1 1.9774 -2.5242 3.0843 39 1 3.6554 -2.2275 2.5697 40 1 3.6471 -4.3655 1.3129 41 1 1.9691 -4.6615 1.8278 42 1 3.5315 -6.6853 2.6796 43 1 2.0648 -7.2016 5.0504 44 1 2.8461 -6.3343 6.4057 45 1 2.6645 -9.2078 5.9765 46 1 3.4124 -8.3460 7.3488 47 1 4.0837 -10.6008 4.9201 48 1 4.7903 -10.7167 6.5497 49 1 5.8809 -12.5062 4.7426 50 1 9.4659 -14.5395 2.9034 51 1 5.8907 -7.9369 4.1748 52 1 4.3162 -8.6243 3.6596 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265318549.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:40 Heat of formation + Delta-G solvation = -120.639793 kcal Electronic energy + Delta-G solvation = -29067.363236 eV Core-core repulsion = 24873.743732 eV Total energy + Delta-G solvation = -4193.619504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.21310 -39.12422 -38.73003 -37.62434 -34.66290 -34.40854 -33.93233 -32.48592 -31.74370 -31.03634 -28.69045 -27.73048 -27.26001 -26.33954 -24.04415 -22.47726 -21.76797 -21.32086 -20.83709 -20.18242 -19.39811 -18.31805 -17.63776 -16.94386 -16.49028 -16.45192 -16.19923 -15.43318 -15.32525 -15.16640 -14.96574 -14.57396 -14.41164 -14.09629 -13.76015 -13.51409 -13.36805 -13.24428 -13.02063 -12.89047 -12.76408 -12.59267 -12.48709 -12.38140 -12.14729 -11.93766 -11.83495 -11.75185 -11.55841 -11.41420 -11.32368 -11.20261 -11.05003 -11.00887 -10.70110 -10.62104 -10.00989 -9.97995 -9.93217 -9.58997 -9.16252 -8.59614 -8.23971 -8.12569 -6.34597 -3.86189 2.50650 2.85294 2.99485 3.03045 3.12099 3.34854 3.68901 4.01756 4.07348 4.37890 4.45515 4.54565 4.60753 4.63828 4.66759 4.72163 4.80088 4.84939 4.97374 5.02373 5.03501 5.11790 5.15483 5.17780 5.22051 5.30812 5.33799 5.36548 5.39677 5.41748 5.51342 5.66797 5.72236 5.72701 5.75609 5.81107 5.82680 5.88872 5.96813 6.00622 6.06436 6.34933 6.41485 6.89206 7.01573 7.06223 7.36696 7.54509 8.10105 8.10630 8.56141 8.91465 9.38492 9.78778 10.78416 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.001587 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.840246 B =17642.710139 C =18410.786370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 C -0.151 4.151 4 O -0.382 6.382 5 C 0.062 3.938 6 C -0.103 4.103 7 C -0.139 4.139 8 C 0.514 3.486 9 O -0.537 6.537 10 N -0.723 5.723 11 C 0.140 3.860 12 H 0.103 0.897 13 C -0.139 4.139 14 C 0.035 3.965 15 N -0.490 5.490 16 C 0.035 3.965 17 C 0.450 3.550 18 O -0.560 6.560 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.035 3.965 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.400 0.600 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.094 0.906 49 H 0.370 0.630 50 H 0.274 0.726 51 H 0.114 0.886 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.155 19.261 -5.965 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.022 3.978 3 C -0.208 4.208 4 O -0.301 6.301 5 C -0.014 4.014 6 C -0.141 4.141 7 C -0.179 4.179 8 C 0.301 3.699 9 O -0.413 6.413 10 N -0.374 5.374 11 C 0.035 3.965 12 H 0.121 0.879 13 C -0.178 4.178 14 C -0.094 4.094 15 N -0.214 5.214 16 C -0.097 4.097 17 C 0.236 3.764 18 O -0.441 6.441 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.093 4.093 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.235 0.765 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.067 0.933 48 H 0.112 0.888 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.132 0.868 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.865 20.463 -4.918 28.940 hybrid contribution -1.721 -2.240 -1.055 3.016 sum -21.586 18.222 -5.974 28.874 Atomic orbital electron populations 1.22308 0.96053 1.02332 1.02622 1.22083 0.93609 0.93903 0.88175 1.21869 1.01919 0.94492 1.02514 1.87944 1.86564 1.20062 1.35550 1.22539 0.99242 0.81732 0.97906 1.21208 1.03627 0.92454 0.96820 1.21560 1.03214 0.96695 0.96408 1.20568 0.77325 0.81913 0.90139 1.90724 1.51747 1.60598 1.38216 1.46027 1.67837 1.08649 1.14895 1.21937 0.95109 0.95249 0.84253 0.87885 1.22785 0.98218 0.97254 0.99541 1.22918 0.89774 0.95805 1.00887 1.64478 1.26579 1.06901 1.23474 1.22135 0.96768 0.89265 1.01493 1.19607 0.88941 0.83475 0.84405 1.90537 1.50749 1.45019 1.57832 1.42215 1.16334 1.07430 1.56942 1.19430 0.91403 0.96243 1.36320 0.86238 1.25036 0.96493 0.97343 0.97217 1.69623 1.20154 1.21127 1.41113 0.86680 0.81374 0.82675 0.78707 1.19698 1.20128 1.19478 1.23555 1.03482 0.91596 0.90669 0.91708 0.91691 0.92522 0.92284 0.91912 0.91296 0.91732 0.93248 0.93411 0.90327 0.90166 0.88539 0.88782 0.76540 0.91388 0.90492 0.93796 0.90046 0.93327 0.88753 0.79719 0.91589 0.86756 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 9.53 37.16 0.35 -0.65 16 2 C 0.08 0.54 3.34 -26.73 -0.09 0.45 16 3 C -0.15 -0.89 9.56 37.16 0.36 -0.53 16 4 O -0.38 -3.54 9.99 -35.23 -0.35 -3.90 16 5 C 0.06 0.46 5.75 37.16 0.21 0.67 16 6 C -0.10 -0.90 4.87 -26.73 -0.13 -1.03 16 7 C -0.14 -1.00 5.70 -27.88 -0.16 -1.16 16 8 C 0.51 5.74 7.83 -10.98 -0.09 5.65 16 9 O -0.54 -8.23 15.71 5.56 0.09 -8.14 16 10 N -0.72 -7.47 5.14 -52.00 -0.27 -7.74 16 11 C 0.14 1.80 3.35 -66.07 -0.22 1.58 16 12 H 0.10 1.57 7.70 -51.93 -0.40 1.17 16 13 C -0.14 -1.58 6.67 -25.38 -0.17 -1.75 16 14 C 0.03 0.41 6.70 -2.76 -0.02 0.40 16 15 N -0.49 -7.69 5.11 -231.90 -1.18 -8.88 16 16 C 0.04 0.57 5.31 -4.98 -0.03 0.55 16 17 C 0.45 9.93 7.41 -10.99 -0.08 9.85 16 18 O -0.56 -14.50 13.87 5.55 0.08 -14.42 16 19 N -0.59 -13.70 5.09 -10.96 -0.06 -13.75 16 20 C -0.31 -8.47 10.16 -14.93 -0.15 -8.62 16 21 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 22 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 23 N -0.88 -25.36 13.96 55.50 0.77 -24.59 16 24 Si 0.88 18.98 27.74 -169.99 -4.71 14.27 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 28 C 0.04 0.53 5.19 -1.90 -0.01 0.52 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 32 H 0.06 0.34 7.79 -51.93 -0.40 -0.07 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.05 0.29 7.87 -51.93 -0.41 -0.12 16 38 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.40 3.12 8.53 -40.82 -0.35 2.77 16 43 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.04 0.47 7.68 -51.93 -0.40 0.07 16 46 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 47 H 0.05 0.68 7.98 -51.93 -0.41 0.27 16 48 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 49 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 50 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 51 H 0.11 2.13 6.43 -51.93 -0.33 1.79 16 52 H 0.04 0.58 7.88 -51.93 -0.41 0.18 16 LS Contribution 419.13 15.07 6.32 6.32 Total: -1.00 -34.52 419.13 -8.86 -43.38 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -9.22 Total: 10.49 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -0.32 Total: 6.96 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.73 Total: -54.95 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.19 Total: -26.46 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.52 -8.86 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265318549.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.257 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds