Wall clock time and date at job start Wed Apr 1 2020 00:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47201 * 2 1 4 4 O 1.42899 * 109.46799 * 120.00509 * 2 1 3 5 5 C 1.42906 * 113.99928 * 90.00111 * 4 2 1 6 6 C 1.53000 * 109.46560 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46550 * 179.97438 * 6 5 4 8 8 C 1.50709 * 109.47193 * 179.97438 * 7 6 5 9 9 O 1.21277 * 119.99544 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00048 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99732 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.64777 * 323.30511 * 11 10 8 13 13 C 1.54596 * 110.72526 * 86.46252 * 11 10 8 14 14 C 1.53989 * 105.14316 * 140.31381 * 13 11 10 15 15 N 1.47894 * 107.05835 * 1.22251 * 14 13 11 16 16 C 1.46902 * 111.00050 * 214.15441 * 15 14 13 17 17 C 1.50699 * 109.46892 * 176.63888 * 16 15 14 18 18 O 1.21289 * 120.00552 * 6.13859 * 17 16 15 19 19 N 1.34777 * 119.99670 * 186.13614 * 17 16 15 20 20 C 1.37100 * 120.00175 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00005 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00031 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99804 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00323 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47465 * 89.99821 * 24 22 20 26 26 H 1.48504 * 109.47127 * 210.00471 * 24 22 20 27 27 H 1.48504 * 109.47051 * 329.99756 * 24 22 20 28 28 C 1.48528 * 105.82068 * 334.67131 * 15 14 13 29 29 H 1.09002 * 109.46677 * 300.00020 * 1 2 3 30 30 H 1.08999 * 109.47032 * 59.99333 * 1 2 3 31 31 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46677 * 239.99980 * 2 1 3 33 33 H 1.09005 * 109.46518 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47672 * 300.00275 * 3 2 1 35 35 H 1.09003 * 109.46823 * 60.00958 * 3 2 1 36 36 H 1.08997 * 109.47202 * 59.99677 * 5 4 2 37 37 H 1.09000 * 109.46558 * 299.99432 * 5 4 2 38 38 H 1.08997 * 109.47516 * 60.00004 * 6 5 4 39 39 H 1.09000 * 109.47331 * 299.99093 * 6 5 4 40 40 H 1.08999 * 109.47992 * 59.99968 * 7 6 5 41 41 H 1.09006 * 109.47500 * 299.99402 * 7 6 5 42 42 H 0.96998 * 120.00315 * 0.02562 * 10 8 7 43 43 H 1.08998 * 110.30463 * 21.39173 * 13 11 10 44 44 H 1.09004 * 110.38801 * 259.27818 * 13 11 10 45 45 H 1.08995 * 109.91431 * 241.86889 * 14 13 11 46 46 H 1.09007 * 110.08204 * 120.66963 * 14 13 11 47 47 H 1.08997 * 109.47090 * 56.64013 * 16 15 14 48 48 H 1.09001 * 109.46906 * 296.64200 * 16 15 14 49 49 H 0.97006 * 120.00292 * 0.02562 * 19 17 16 50 50 H 0.96996 * 119.99728 * 179.97438 * 23 22 20 51 51 H 1.09005 * 110.66641 * 157.64500 * 28 15 14 52 52 H 1.09000 * 110.66827 * 280.76869 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2000 -2.0783 0.9884 6 6 2.7090 -2.6926 2.2940 7 6 2.9158 -4.1965 2.1033 8 6 3.4177 -4.8017 3.3891 9 8 3.5931 -4.0991 4.3619 10 7 3.6715 -6.1235 3.4578 11 6 4.1599 -6.7115 4.7075 12 1 4.8421 -6.0280 5.2131 13 6 2.9800 -7.0902 5.6318 14 6 3.3796 -8.4367 6.2630 15 7 4.7223 -8.7773 5.7450 16 6 4.8694 -10.2293 5.5779 17 6 6.2160 -10.5314 4.9725 18 8 7.0215 -9.6394 4.8094 19 7 6.5253 -11.7928 4.6125 20 6 7.7505 -12.0678 4.0622 21 1 8.4680 -11.2737 3.9176 22 6 8.0691 -13.3682 3.6905 23 7 9.2434 -13.6317 3.1625 24 14 6.8278 -14.7416 3.9398 25 1 5.9789 -14.8677 2.7280 26 1 7.5452 -16.0201 4.1770 27 1 5.9726 -14.4290 5.1129 28 6 4.8430 -8.0765 4.4410 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4423 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 2.9319 -2.2468 0.1985 37 1 1.2537 -2.5434 0.7123 38 1 1.9774 -2.5242 3.0843 39 1 3.6554 -2.2275 2.5697 40 1 3.6471 -4.3655 1.3129 41 1 1.9691 -4.6615 1.8278 42 1 3.5315 -6.6853 2.6796 43 1 2.0648 -7.2016 5.0504 44 1 2.8461 -6.3343 6.4057 45 1 2.6645 -9.2078 5.9765 46 1 3.4124 -8.3460 7.3488 47 1 4.0837 -10.6008 4.9201 48 1 4.7903 -10.7167 6.5497 49 1 5.8809 -12.5062 4.7426 50 1 9.4659 -14.5395 2.9034 51 1 5.8907 -7.9369 4.1748 52 1 4.3162 -8.6243 3.6596 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265318549.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:39 Heat of formation + Delta-G solvation = -148.564016 kcal Electronic energy + Delta-G solvation = -29068.574121 eV Core-core repulsion = 24873.743732 eV Total energy + Delta-G solvation = -4194.830389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.24415 -40.46944 -39.40962 -38.99583 -36.05382 -35.46438 -35.14369 -33.75728 -33.09256 -32.15605 -29.69402 -28.55185 -28.12831 -27.38443 -25.73094 -23.23992 -22.46322 -22.29494 -21.68760 -21.29561 -21.07943 -20.16770 -18.42633 -17.85639 -17.60524 -17.42652 -17.09943 -16.75576 -16.64910 -16.13422 -15.97829 -15.72072 -15.61242 -15.11311 -14.88882 -14.76326 -14.45535 -14.26164 -14.15608 -14.05379 -13.87015 -13.62856 -13.30123 -13.23112 -13.02733 -12.98320 -12.77299 -12.76216 -12.45219 -12.41566 -12.39666 -12.29788 -12.15233 -11.97602 -11.82566 -11.70453 -11.55551 -11.47092 -10.93715 -10.48112 -10.36385 -10.23840 -10.10263 -9.34566 -8.40366 -6.01337 1.31362 1.36114 1.45605 1.63224 1.95658 2.02494 2.23915 2.66908 2.79645 3.15917 3.28967 3.49294 3.74635 3.77201 3.95386 3.98827 4.05242 4.13692 4.16047 4.19101 4.25108 4.30929 4.34951 4.39577 4.42295 4.51644 4.52919 4.54640 4.67815 4.71634 4.74861 4.87963 4.89775 4.92814 4.94653 4.97303 5.08535 5.12292 5.17668 5.25701 5.30447 5.33503 5.44792 5.53278 5.84933 5.92718 6.04226 6.37253 6.54398 6.60611 6.89427 7.25690 7.40483 7.97815 8.77243 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.001587 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.840246 B =17642.710139 C =18410.786370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.072 3.928 3 C -0.151 4.151 4 O -0.411 6.411 5 C 0.064 3.936 6 C -0.100 4.100 7 C -0.127 4.127 8 C 0.510 3.490 9 O -0.586 6.586 10 N -0.712 5.712 11 C 0.146 3.854 12 H 0.068 0.932 13 C -0.129 4.129 14 C 0.039 3.961 15 N -0.520 5.520 16 C 0.047 3.953 17 C 0.449 3.551 18 O -0.607 6.607 19 N -0.590 5.590 20 C -0.327 4.327 21 H 0.054 0.946 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.255 1.255 26 H -0.277 1.277 27 H -0.231 1.231 28 C 0.042 3.958 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.416 0.584 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.121 0.879 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.067 0.933 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.639 17.548 -6.590 31.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 C -0.208 4.208 4 O -0.332 6.332 5 C -0.012 4.012 6 C -0.138 4.138 7 C -0.166 4.166 8 C 0.298 3.702 9 O -0.466 6.466 10 N -0.364 5.364 11 C 0.040 3.960 12 H 0.087 0.913 13 C -0.168 4.168 14 C -0.088 4.088 15 N -0.245 5.245 16 C -0.084 4.084 17 C 0.237 3.763 18 O -0.491 6.491 19 N -0.232 5.232 20 C -0.457 4.457 21 H 0.072 0.928 22 C -0.213 4.213 23 N -0.576 5.576 24 Si 0.785 3.215 25 H -0.180 1.180 26 H -0.203 1.203 27 H -0.154 1.154 28 C -0.087 4.087 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.253 0.747 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.139 0.861 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.384 18.750 -5.555 31.257 hybrid contribution -0.205 -1.547 -0.864 1.784 sum -24.588 17.203 -6.419 30.688 Atomic orbital electron populations 1.22287 0.95265 1.02575 1.02899 1.22289 0.94305 0.94068 0.87840 1.21899 1.01496 0.94407 1.03022 1.87915 1.86961 1.21122 1.37158 1.22573 1.00472 0.81086 0.97100 1.21133 1.01732 0.93650 0.97281 1.21563 1.05323 0.95264 0.94471 1.21308 0.76343 0.81637 0.90900 1.90710 1.53910 1.61651 1.40290 1.45915 1.67074 1.08779 1.14661 1.21621 0.95394 0.93485 0.85539 0.91350 1.22716 0.98019 0.96936 0.99093 1.22966 0.88163 0.96507 1.01157 1.64392 1.29629 1.06627 1.23838 1.22083 0.93197 0.90129 1.02980 1.20859 0.90737 0.82305 0.82435 1.90539 1.53038 1.46446 1.59063 1.42023 1.15165 1.08655 1.57358 1.18989 0.92639 0.95415 1.38626 0.92757 1.26110 0.99047 1.00280 0.95863 1.69812 1.23109 1.22291 1.42359 0.85369 0.78414 0.77191 0.80568 1.17987 1.20253 1.15392 1.23306 1.01075 0.93032 0.91260 0.92773 0.90063 0.92284 0.91010 0.92603 0.89334 0.92676 0.91893 0.91526 0.92226 0.92850 0.86241 0.85353 0.74694 0.89203 0.91071 0.90962 0.89343 0.89532 0.86070 0.77468 0.91191 0.91500 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 9.53 71.98 0.69 -1.04 16 2 C 0.07 0.89 3.34 30.59 0.10 0.99 16 3 C -0.15 -1.68 9.56 71.98 0.69 -1.00 16 4 O -0.41 -7.47 9.99 -148.98 -1.49 -8.95 16 5 C 0.06 0.85 5.75 71.98 0.41 1.26 16 6 C -0.10 -1.71 4.87 30.59 0.15 -1.56 16 7 C -0.13 -1.58 5.70 29.85 0.17 -1.41 16 8 C 0.51 11.08 7.83 87.66 0.69 11.76 16 9 O -0.59 -18.60 15.71 -3.02 -0.05 -18.64 16 10 N -0.71 -13.89 5.14 -436.84 -2.25 -16.13 16 11 C 0.15 3.72 3.35 46.20 0.15 3.88 16 12 H 0.07 2.22 7.70 -2.39 -0.02 2.21 16 13 C -0.13 -2.64 6.67 31.47 0.21 -2.43 16 14 C 0.04 0.81 6.70 86.45 0.58 1.39 16 15 N -0.52 -15.40 5.11 -887.60 -4.54 -19.94 16 16 C 0.05 1.39 5.31 85.56 0.45 1.84 16 17 C 0.45 19.69 7.41 87.66 0.65 20.34 16 18 O -0.61 -32.97 13.87 -3.06 -0.04 -33.01 16 19 N -0.59 -27.02 5.09 -306.99 -1.56 -28.58 16 20 C -0.33 -18.87 10.16 84.04 0.85 -18.01 16 21 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.94 -55.81 13.96 21.66 0.30 -55.51 16 24 Si 0.96 37.75 27.74 68.60 1.90 39.65 16 25 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 26 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 28 C 0.04 1.24 5.19 86.65 0.45 1.69 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.55 7.87 -2.39 -0.02 0.53 16 32 H 0.07 0.68 7.79 -2.39 -0.02 0.67 16 33 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.66 8.08 -2.39 -0.02 0.64 16 37 H 0.07 0.63 7.87 -2.39 -0.02 0.61 16 38 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 39 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 40 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.42 5.51 8.53 -92.71 -0.79 4.72 16 43 H 0.09 1.48 8.05 -2.39 -0.02 1.46 16 44 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.07 1.13 7.68 -2.39 -0.02 1.11 16 46 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.09 1.95 7.98 -2.39 -0.02 1.93 16 48 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 49 H 0.39 14.59 5.76 -92.70 -0.53 14.06 16 50 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 51 H 0.07 2.64 6.43 -2.38 -0.02 2.62 16 52 H 0.06 1.53 7.88 -2.39 -0.02 1.51 16 Total: -1.00 -84.34 419.13 -1.48 -85.81 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -0.47 Total: 37.91 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 6.71 Total: 17.39 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -8.04 Total: -120.16 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -1.58 Total: -60.61 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 1.90 Total: 39.65 kcal Total: -84.34 -1.48 -85.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265318549.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.753 kcal (2) G-P(sol) polarization free energy of solvation -84.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds