Wall clock time and date at job start Wed Apr 1 2020 00:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47254 * 2 1 4 4 O 1.42901 * 109.47356 * 179.97438 * 3 2 1 5 5 C 1.42897 * 113.99766 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46727 * 180.02562 * 5 4 3 7 7 O 1.21283 * 120.00220 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99683 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99728 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47149 * 154.99850 * 9 8 6 11 11 C 1.52996 * 109.47023 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47267 * 299.99794 * 11 10 9 13 13 N 1.46901 * 109.47187 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 154.99992 * 13 12 11 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 O 1.21297 * 120.00124 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00196 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00290 * 180.02562 * 17 15 14 19 19 H 1.07990 * 119.99768 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99812 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99431 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00201 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47527 * 89.99837 * 22 20 18 24 24 H 1.48505 * 109.46906 * 209.99968 * 22 20 18 25 25 H 1.48499 * 109.47065 * 329.99736 * 22 20 18 26 26 C 1.53003 * 109.46931 * 60.00150 * 12 11 10 27 27 C 1.52996 * 109.47260 * 299.99693 * 26 12 11 28 28 H 1.08999 * 109.47259 * 299.99924 * 1 2 3 29 29 H 1.08996 * 109.47355 * 59.99657 * 1 2 3 30 30 H 1.08995 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47259 * 240.00076 * 2 1 3 32 32 H 1.09001 * 109.47071 * 119.99681 * 2 1 3 33 33 H 1.08999 * 109.46926 * 59.99872 * 3 2 1 34 34 H 1.08996 * 109.47219 * 300.00425 * 3 2 1 35 35 H 1.08998 * 109.47132 * 60.00489 * 5 4 3 36 36 H 1.09001 * 109.47525 * 300.00021 * 5 4 3 37 37 H 0.96998 * 120.00566 * 359.97438 * 8 6 5 38 38 H 1.08996 * 109.47496 * 34.99468 * 9 8 6 39 39 H 1.09000 * 109.46837 * 59.99772 * 10 9 8 40 40 H 1.08998 * 109.46944 * 299.99604 * 10 9 8 41 41 H 1.08995 * 109.47174 * 180.02562 * 11 10 9 42 42 H 1.08996 * 109.47449 * 59.99724 * 11 10 9 43 43 H 1.09000 * 109.47284 * 300.00517 * 12 11 10 44 44 H 1.00901 * 111.00067 * 278.95167 * 13 12 11 45 45 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 46 46 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 47 47 H 0.97009 * 119.99629 * 359.97438 * 17 15 14 48 48 H 0.97004 * 119.99652 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.47234 * 60.00407 * 26 12 11 50 50 H 1.09007 * 109.47106 * 180.02562 * 26 12 11 51 51 H 1.08996 * 109.47580 * 300.00502 * 27 26 12 52 52 H 1.08995 * 109.47412 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6290 0.0001 7 8 6.0741 1.5340 0.0011 8 7 6.3164 3.7394 0.0002 9 6 7.7768 3.6237 0.0008 10 6 8.3887 4.8866 -0.6089 11 6 9.9140 4.7660 -0.6076 12 6 10.4114 4.6011 0.8299 13 7 11.8758 4.4848 0.8310 14 6 12.4368 4.9114 2.1199 15 6 13.9374 4.7790 2.0831 16 8 14.4858 4.3698 1.0815 17 7 14.6703 5.1151 3.1631 18 6 16.0356 4.9951 3.1294 19 1 16.5238 4.6308 2.2377 20 6 16.7911 5.3411 4.2431 21 7 18.0998 5.2256 4.2110 22 14 15.9465 5.9691 5.7863 23 1 15.6196 4.8236 6.6729 24 1 16.8521 6.9049 6.5003 25 1 14.6965 6.6783 5.4127 26 6 9.7994 3.3383 1.4396 27 6 8.2742 3.4588 1.4384 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.7282 3.2894 0.8896 36 1 3.7289 3.2884 -0.8904 37 1 5.8993 4.6151 -0.0002 38 1 8.0729 2.7557 -0.5882 39 1 8.0927 5.7545 -0.0197 40 1 8.0341 5.0042 -1.6328 41 1 10.3499 5.6658 -1.0415 42 1 10.2103 3.8979 -1.1964 43 1 10.1150 5.4692 1.4187 44 1 12.1640 3.5446 0.6047 45 1 12.1686 5.9513 2.3065 46 1 12.0357 4.2844 2.9162 47 1 14.2318 5.4426 3.9640 48 1 18.6272 5.4668 4.9886 49 1 10.0958 2.4702 0.8508 50 1 10.1535 3.2210 2.4639 51 1 7.9779 4.3269 2.0272 52 1 7.8383 2.5590 1.8723 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265731097.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:23 Heat of formation + Delta-G solvation = -134.792902 kcal Electronic energy + Delta-G solvation = -28966.193107 eV Core-core repulsion = 24771.959878 eV Total energy + Delta-G solvation = -4194.233228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46040 -39.11016 -38.35365 -37.83637 -35.48162 -34.17292 -33.98659 -33.11498 -31.63842 -30.99771 -29.74661 -28.12861 -26.32542 -25.66359 -23.71833 -22.95669 -22.12922 -21.76122 -20.83839 -20.26365 -19.32285 -18.32141 -17.61043 -17.37202 -17.01528 -16.32803 -16.09014 -15.61464 -15.39853 -15.08444 -14.86148 -14.63377 -14.61656 -14.20328 -14.11444 -13.84274 -13.57271 -13.18956 -13.02773 -12.91943 -12.64567 -12.63459 -12.50258 -12.47512 -12.31437 -12.08781 -11.80750 -11.47367 -11.43451 -11.39580 -11.35401 -11.30813 -11.15508 -10.66705 -10.58326 -10.53167 -10.21728 -10.06789 -9.95971 -9.55645 -9.37793 -8.55992 -8.17288 -8.06866 -6.29638 -3.80908 2.25695 2.36414 3.03332 3.07454 3.15666 3.45464 3.76506 4.07428 4.11967 4.26605 4.41343 4.42805 4.50397 4.52637 4.60227 4.66807 4.77743 4.82612 4.85919 4.92735 4.94699 4.99450 5.06210 5.17824 5.19259 5.23463 5.26489 5.30175 5.48998 5.53144 5.55623 5.60753 5.66672 5.70015 5.74021 5.82129 5.84964 5.94141 5.96819 5.98885 6.11571 6.22375 6.23424 6.54738 7.11421 7.16866 7.59854 7.62788 7.87307 8.16573 8.61668 8.96825 9.44282 9.84972 10.83616 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025464 B = 0.001480 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.322290 B =18910.004079 C =19438.160082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.045 3.955 6 C 0.512 3.488 7 O -0.515 6.515 8 N -0.727 5.727 9 C 0.145 3.855 10 C -0.123 4.123 11 C -0.103 4.103 12 C 0.087 3.913 13 N -0.664 5.664 14 C 0.048 3.952 15 C 0.450 3.550 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.149 4.149 27 C -0.123 4.123 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.352 0.648 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.063 0.937 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.864 -0.929 -6.172 37.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.036 4.036 6 C 0.297 3.703 7 O -0.389 6.389 8 N -0.380 5.380 9 C 0.042 3.958 10 C -0.162 4.162 11 C -0.141 4.141 12 C -0.024 4.024 13 N -0.295 5.295 14 C -0.085 4.085 15 C 0.236 3.764 16 O -0.446 6.446 17 N -0.231 5.231 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.189 4.189 27 C -0.162 4.162 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.172 0.828 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.082 0.918 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -35.662 -1.573 -7.053 36.387 hybrid contribution -1.135 0.560 2.056 2.414 sum -36.797 -1.012 -4.997 37.149 Atomic orbital electron populations 1.21696 0.94587 1.02432 1.01978 1.21456 0.95656 0.95312 1.03778 1.22651 0.80343 0.98441 1.00246 1.88021 1.19680 1.25108 1.95425 1.22191 0.91720 0.87110 1.02535 1.20260 0.88602 0.84774 0.76688 1.90761 1.74512 1.26429 1.47195 1.45998 1.07196 1.08514 1.76262 1.21088 0.77869 0.99765 0.97109 1.21805 0.96587 0.96645 1.01124 1.21425 0.92647 1.03451 0.96619 1.21652 0.87531 0.96875 0.96333 1.60182 1.06701 1.32301 1.30289 1.21734 0.94486 1.01238 0.91026 1.19745 0.87903 0.84293 0.84503 1.90568 1.72570 1.49423 1.32037 1.42213 1.07724 1.59786 1.13378 1.19443 0.79408 1.41763 1.02765 0.86282 1.25032 0.95361 0.97758 0.97970 1.69626 1.04267 1.47617 1.30693 0.86673 0.79523 0.79508 0.83689 1.19680 1.20177 1.19501 1.22297 0.95036 0.99693 1.01883 1.21835 0.95848 1.02278 0.96238 0.92515 0.92512 0.91864 0.90910 0.90907 0.93135 0.93126 0.90304 0.90306 0.76701 0.89182 0.91338 0.91125 0.90364 0.91416 0.90533 0.82829 0.89590 0.93793 0.79723 0.91639 0.91258 0.91573 0.91781 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 37.16 0.37 -0.20 16 2 C -0.12 -0.72 6.30 -26.73 -0.17 -0.89 16 3 C 0.06 0.35 5.94 37.16 0.22 0.57 16 4 O -0.36 -3.44 9.88 -55.14 -0.54 -3.98 16 5 C 0.04 0.29 6.42 36.01 0.23 0.52 16 6 C 0.51 4.89 7.87 -10.98 -0.09 4.80 16 7 O -0.52 -7.58 16.16 -14.36 -0.23 -7.81 16 8 N -0.73 -4.95 5.08 -53.80 -0.27 -5.23 16 9 C 0.15 1.23 2.46 -67.92 -0.17 1.06 16 10 C -0.12 -0.87 5.39 -26.73 -0.14 -1.01 16 11 C -0.10 -0.99 5.53 -26.73 -0.15 -1.14 16 12 C 0.09 0.96 2.47 -67.71 -0.17 0.79 16 13 N -0.66 -10.06 5.87 -107.99 -0.63 -10.70 16 14 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 15 C 0.45 10.27 7.82 -10.99 -0.09 10.19 16 16 O -0.56 -15.29 15.78 5.54 0.09 -15.20 16 17 N -0.59 -14.19 5.09 -10.96 -0.06 -14.24 16 18 C -0.31 -8.71 10.16 -14.93 -0.15 -8.86 16 19 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 20 C 0.04 1.15 5.50 -17.46 -0.10 1.05 16 21 N -0.88 -25.94 13.96 55.50 0.77 -25.17 16 22 Si 0.88 19.46 27.74 -169.99 -4.72 14.74 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 26 C -0.15 -1.56 5.17 -26.73 -0.14 -1.70 16 27 C -0.12 -1.13 5.49 -26.73 -0.15 -1.28 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.40 1.38 8.60 -40.82 -0.35 1.03 16 38 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.80 7.80 -51.93 -0.41 0.40 16 44 H 0.35 5.66 8.17 -39.29 -0.32 5.34 16 45 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 46 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 47 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 50 H 0.07 0.72 7.45 -51.92 -0.39 0.34 16 51 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 419.49 15.07 6.32 6.32 Total: -1.00 -36.55 419.49 -9.20 -45.75 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -9.22 Total: 10.85 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -0.71 Total: 4.66 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.19 Total: -55.33 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.69 Total: -27.00 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.72 Total: 14.74 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -36.55 -9.20 -45.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265731097.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.044 kcal (2) G-P(sol) polarization free energy of solvation -36.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds