Wall clock time and date at job start Wed Apr 1 2020 00:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47366 * 2 1 4 4 O 1.42901 * 109.47319 * 120.00175 * 2 1 3 5 5 C 1.42897 * 113.99766 * 149.99806 * 4 2 1 6 6 C 1.50703 * 109.46632 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00376 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99538 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99677 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47149 * 155.00325 * 9 8 6 11 11 C 1.52996 * 109.47023 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47267 * 299.99794 * 11 10 9 13 13 N 1.46901 * 109.47187 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 154.99992 * 13 12 11 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 O 1.21297 * 120.00124 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00196 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00290 * 180.02562 * 17 15 14 19 19 H 1.07990 * 119.99768 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99812 * 180.02562 * 18 17 15 21 21 N 1.31406 * 120.00264 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99477 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47050 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46549 * 120.00378 * 22 20 18 25 25 H 1.48501 * 109.46563 * 239.99625 * 22 20 18 26 26 C 1.53003 * 109.46931 * 60.00150 * 12 11 10 27 27 C 1.52996 * 109.47260 * 299.99693 * 26 12 11 28 28 H 1.09004 * 109.46798 * 300.00012 * 1 2 3 29 29 H 1.09000 * 109.47191 * 59.99335 * 1 2 3 30 30 H 1.09000 * 109.47533 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47056 * 240.00312 * 2 1 3 32 32 H 1.08996 * 109.47664 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47508 * 300.00470 * 3 2 1 34 34 H 1.09012 * 109.46856 * 60.00058 * 3 2 1 35 35 H 1.08998 * 109.47132 * 60.00489 * 5 4 2 36 36 H 1.09001 * 109.47525 * 300.00021 * 5 4 2 37 37 H 0.96998 * 120.00616 * 0.02562 * 8 6 5 38 38 H 1.08996 * 109.47496 * 34.99943 * 9 8 6 39 39 H 1.09000 * 109.46837 * 59.99772 * 10 9 8 40 40 H 1.08998 * 109.46944 * 299.99604 * 10 9 8 41 41 H 1.08995 * 109.47174 * 180.02562 * 11 10 9 42 42 H 1.08996 * 109.47449 * 59.99724 * 11 10 9 43 43 H 1.09000 * 109.47284 * 300.00517 * 12 11 10 44 44 H 1.00901 * 111.00067 * 278.95167 * 13 12 11 45 45 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 46 46 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 47 47 H 0.97009 * 119.99629 * 359.97438 * 17 15 14 48 48 H 0.96997 * 120.00444 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.47234 * 60.00407 * 26 12 11 50 50 H 1.09007 * 109.47106 * 180.02562 * 26 12 11 51 51 H 1.08996 * 109.47580 * 300.00502 * 27 26 12 52 52 H 1.08995 * 109.47412 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3245 0.9885 6 6 3.6699 -1.9978 2.2748 7 8 2.9497 -1.9277 3.2481 8 7 4.8309 -2.6788 2.3431 9 6 5.2234 -3.3339 3.5934 10 6 6.1707 -4.4951 3.2853 11 6 6.5810 -5.1788 4.5911 12 6 7.2901 -4.1683 5.4950 13 7 7.6835 -4.8246 6.7490 14 6 8.8266 -4.1386 7.3660 15 6 9.2011 -4.8390 8.6467 16 8 8.5774 -5.8140 9.0096 17 7 10.2290 -4.3821 9.3890 18 6 10.5700 -5.0195 10.5539 19 1 10.0147 -5.8876 10.8769 20 6 11.6295 -4.5480 11.3195 21 7 12.3049 -3.4915 10.9267 22 14 12.0936 -5.4163 12.9070 23 1 11.1852 -6.5708 13.1236 24 1 13.4947 -5.8996 12.8154 25 1 11.9703 -4.4686 14.0437 26 6 6.3427 -3.0070 5.8031 27 6 5.9324 -2.3233 4.4973 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 4.0199 -0.5874 0.7124 36 1 3.1809 -2.0707 0.1985 37 1 5.4068 -2.7353 1.5646 38 1 4.3355 -3.7136 4.0989 39 1 7.0586 -4.1153 2.7798 40 1 5.6657 -5.2149 2.6411 41 1 7.2563 -6.0058 4.3716 42 1 5.6934 -5.5585 5.0970 43 1 8.1778 -3.7885 4.9891 44 1 6.9052 -4.8777 7.3889 45 1 9.6743 -4.1570 6.6810 46 1 8.5565 -3.1050 7.5823 47 1 10.7280 -3.6025 9.0987 48 1 13.0442 -3.1621 11.4612 49 1 5.4551 -3.3867 6.3090 50 1 6.8480 -2.2868 6.4467 51 1 6.8201 -1.9436 3.9915 52 1 5.2572 -1.4963 4.7168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265731465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:26 Heat of formation + Delta-G solvation = -166.045832 kcal Electronic energy + Delta-G solvation = -29174.295050 eV Core-core repulsion = 24978.706592 eV Total energy + Delta-G solvation = -4195.588457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.19476 -40.28586 -39.57306 -38.78094 -36.51387 -35.86166 -34.15079 -33.64754 -33.23884 -31.75261 -30.42155 -28.63708 -28.04788 -27.22001 -25.49672 -23.72527 -22.68740 -22.24281 -21.57281 -21.33063 -20.78082 -19.89196 -18.29697 -18.07018 -17.81638 -17.13719 -16.93911 -16.72760 -16.36302 -16.07836 -15.93461 -15.54534 -15.49929 -15.28150 -15.08355 -14.71883 -14.47698 -14.17187 -13.92970 -13.89651 -13.66164 -13.51822 -13.42149 -13.20197 -13.07068 -13.05269 -12.89128 -12.81933 -12.42833 -12.36141 -12.32558 -12.14178 -12.11310 -12.08815 -11.64122 -11.51923 -11.46841 -11.33134 -10.82119 -10.63439 -10.33942 -10.07353 -10.01518 -9.25323 -8.47051 -5.95735 1.36399 1.41679 1.56021 1.58102 1.82552 2.05213 2.29226 2.90924 3.03619 3.20275 3.51666 3.67923 3.74965 3.80267 4.00881 4.04842 4.10194 4.17234 4.21979 4.27121 4.29086 4.34127 4.34655 4.40714 4.48408 4.52272 4.54961 4.61108 4.74511 4.76031 4.82232 4.88477 4.91035 4.94029 5.00137 5.08920 5.16465 5.22549 5.29085 5.32695 5.36572 5.41074 5.41695 5.52774 5.93094 6.16303 6.18178 6.41174 6.60027 6.60225 7.12650 7.27277 7.56176 8.11802 8.70567 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029953 B = 0.001467 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.583868 B =19079.692089 C =19481.251400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 C -0.175 4.175 4 O -0.397 6.397 5 C 0.045 3.955 6 C 0.506 3.494 7 O -0.578 6.578 8 N -0.708 5.708 9 C 0.149 3.851 10 C -0.109 4.109 11 C -0.100 4.100 12 C 0.090 3.910 13 N -0.677 5.677 14 C 0.066 3.934 15 C 0.436 3.564 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.271 1.271 26 C -0.144 4.144 27 C -0.114 4.114 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.420 0.580 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.341 0.659 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.053 0.947 50 H 0.059 0.941 51 H 0.084 0.916 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.830 9.107 -30.339 34.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.316 6.316 5 C -0.034 4.034 6 C 0.293 3.707 7 O -0.456 6.456 8 N -0.361 5.361 9 C 0.044 3.956 10 C -0.147 4.147 11 C -0.139 4.139 12 C -0.019 4.019 13 N -0.308 5.308 14 C -0.066 4.066 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.183 4.183 27 C -0.154 4.154 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.258 0.742 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.160 0.840 45 H 0.125 0.875 46 H 0.081 0.919 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.078 0.922 51 H 0.103 0.897 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.303 8.130 -29.466 34.184 hybrid contribution 0.371 0.910 1.109 1.482 sum -14.932 9.040 -28.357 33.299 Atomic orbital electron populations 1.21901 0.93412 1.02619 1.02953 1.22391 0.95418 0.92902 0.87641 1.22315 1.01833 0.96244 1.02856 1.88048 1.35805 1.70395 1.37398 1.22398 0.88249 0.98329 0.94458 1.20986 0.81025 0.78520 0.90196 1.90735 1.53764 1.61235 1.39901 1.45807 1.21585 1.53391 1.15353 1.20916 0.97419 0.92709 0.84551 1.21705 0.99431 0.96043 0.97561 1.21395 1.00067 0.97858 0.94594 1.21748 0.97645 0.92337 0.90176 1.60245 1.09459 1.53740 1.07325 1.21563 0.96307 0.95555 0.93205 1.20951 0.82488 0.86676 0.87508 1.90492 1.55839 1.30590 1.74173 1.41936 1.29294 1.28800 1.21000 1.19711 1.14844 1.12117 0.99784 0.90425 1.26023 0.95596 0.97002 1.02515 1.69670 1.21659 1.24031 1.40716 0.84878 0.78195 0.78060 0.77245 1.19867 1.19489 1.19616 1.22202 0.99676 0.98569 0.97891 1.21749 1.00516 0.97690 0.95421 0.93284 0.88863 0.92466 0.89537 0.91924 0.89631 0.93413 0.87619 0.87113 0.74226 0.92192 0.88847 0.89657 0.90603 0.92838 0.88998 0.84047 0.87540 0.91943 0.76959 0.91292 0.92866 0.92188 0.89721 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.56 71.98 0.69 -0.91 16 2 C 0.07 0.78 3.34 30.59 0.10 0.88 16 3 C -0.18 -1.57 9.53 71.98 0.69 -0.88 16 4 O -0.40 -7.28 9.52 -129.94 -1.24 -8.52 16 5 C 0.04 0.50 6.23 71.24 0.44 0.95 16 6 C 0.51 9.54 7.87 87.66 0.69 10.23 16 7 O -0.58 -18.03 16.16 16.01 0.26 -17.77 16 8 N -0.71 -8.72 5.08 -442.50 -2.25 -10.96 16 9 C 0.15 2.47 2.46 44.99 0.11 2.58 16 10 C -0.11 -1.35 5.39 30.59 0.16 -1.18 16 11 C -0.10 -1.90 5.53 30.59 0.17 -1.74 16 12 C 0.09 2.01 2.47 44.92 0.11 2.12 16 13 N -0.68 -21.39 5.87 -495.56 -2.91 -24.30 16 14 C 0.07 2.27 5.97 85.55 0.51 2.78 16 15 C 0.44 21.12 7.82 87.66 0.69 21.80 16 16 O -0.62 -35.39 15.78 -3.08 -0.05 -35.44 16 17 N -0.57 -29.81 5.29 -306.99 -1.62 -31.43 16 18 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 19 H 0.08 4.80 7.16 -2.92 -0.02 4.77 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 21 N -0.92 -49.90 13.05 21.66 0.28 -49.61 16 22 Si 0.99 43.39 29.55 68.60 2.03 45.41 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 C -0.14 -3.17 5.17 30.59 0.16 -3.01 16 27 C -0.11 -2.14 5.49 30.60 0.17 -1.97 16 28 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.46 7.79 -2.39 -0.02 0.44 16 32 H 0.06 0.48 7.87 -2.39 -0.02 0.46 16 33 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.11 0.59 7.87 -2.39 -0.02 0.57 16 36 H 0.11 0.51 8.09 -2.39 -0.02 0.49 16 37 H 0.42 1.68 8.60 -92.71 -0.80 0.88 16 38 H 0.06 1.39 7.58 -2.39 -0.02 1.38 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.81 7.80 -2.39 -0.02 1.79 16 44 H 0.34 11.80 8.17 -89.69 -0.73 11.06 16 45 H 0.11 3.24 8.06 -2.39 -0.02 3.22 16 46 H 0.06 1.93 7.44 -2.39 -0.02 1.91 16 47 H 0.40 19.49 7.90 -92.70 -0.73 18.76 16 48 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 49 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 50 H 0.06 1.39 7.45 -2.38 -0.02 1.38 16 51 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -80.42 421.39 -0.86 -81.28 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: -1.33 Total: 38.33 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 5.97 Total: 13.00 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -6.50 Total: -116.31 kcal Atomic # 8 Polarization: -60.69 SS G_CDS: -1.03 Total: -61.72 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -80.42 -0.86 -81.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265731465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.766 kcal (2) G-P(sol) polarization free energy of solvation -80.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds