Wall clock time and date at job start Wed Apr 1 2020 00:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47839 * 2 1 4 4 C 1.53099 * 109.47316 * 239.97020 * 2 1 3 5 5 C 1.53180 * 109.15683 * 182.40993 * 4 2 1 6 6 H 1.08998 * 109.61502 * 297.06680 * 5 4 2 7 7 C 1.50707 * 109.54271 * 176.84778 * 5 4 2 8 8 O 1.21283 * 119.99555 * 0.44134 * 7 5 4 9 9 N 1.34773 * 120.00203 * 180.44138 * 7 5 4 10 10 C 1.46491 * 120.00042 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47497 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47221 * 179.97438 * 12 11 10 14 14 C 1.46896 * 110.99945 * 293.95790 * 13 12 11 15 15 C 1.46893 * 110.99788 * 169.99762 * 13 12 11 16 16 C 1.50706 * 109.47176 * 189.99911 * 15 13 12 17 17 O 1.21295 * 119.99584 * 0.02562 * 16 15 13 18 18 N 1.34774 * 120.00020 * 180.02562 * 16 15 13 19 19 C 1.37095 * 119.99737 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00254 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99943 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00135 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99954 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47152 * 89.99894 * 23 21 19 25 25 H 1.48501 * 109.47252 * 209.99373 * 23 21 19 26 26 H 1.48500 * 109.47362 * 329.99455 * 23 21 19 27 27 C 1.53174 * 109.03831 * 56.97990 * 5 4 2 28 28 C 1.53086 * 109.16232 * 303.01641 * 27 5 4 29 29 O 1.42895 * 109.48281 * 120.03084 * 2 1 3 30 30 H 1.09001 * 109.46769 * 299.97336 * 1 2 3 31 31 H 1.08998 * 109.47353 * 59.96842 * 1 2 3 32 32 H 1.08993 * 109.47416 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.52431 * 62.50762 * 4 2 1 34 34 H 1.09000 * 109.52443 * 302.31157 * 4 2 1 35 35 H 0.97003 * 119.99871 * 0.02562 * 9 7 5 36 36 H 1.08999 * 109.47193 * 60.00143 * 10 9 7 37 37 H 1.08999 * 109.47389 * 300.00273 * 10 9 7 38 38 H 1.09004 * 109.47349 * 59.99943 * 11 10 9 39 39 H 1.08999 * 109.47081 * 300.00430 * 11 10 9 40 40 H 1.09000 * 109.46749 * 60.00331 * 12 11 10 41 41 H 1.09003 * 109.46816 * 300.00010 * 12 11 10 42 42 H 1.08997 * 109.47186 * 296.04216 * 14 13 12 43 43 H 1.08993 * 109.47654 * 56.04425 * 14 13 12 44 44 H 1.09000 * 109.47132 * 176.04519 * 14 13 12 45 45 H 1.09001 * 109.46739 * 70.00320 * 15 13 12 46 46 H 1.09000 * 109.47767 * 310.00579 * 15 13 12 47 47 H 0.96994 * 119.99756 * 0.02562 * 18 16 15 48 48 H 0.96994 * 120.00084 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.52627 * 62.92811 * 27 5 4 50 50 H 1.09005 * 109.52153 * 183.11207 * 27 5 4 51 51 H 1.09007 * 109.48181 * 177.59112 * 28 27 5 52 52 H 1.09006 * 109.48254 * 297.62503 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0404 -0.7224 -1.2497 5 6 3.5710 -0.7710 -1.2123 6 1 3.9701 0.2428 -1.2417 7 6 4.0798 -1.5478 -2.3992 8 8 3.2971 -2.0103 -3.2020 9 7 5.4046 -1.7285 -2.5687 10 6 5.8992 -2.4841 -3.7222 11 6 7.4274 -2.5415 -3.6771 12 6 7.9440 -3.3301 -4.8822 13 7 9.4114 -3.3847 -4.8392 14 6 9.9934 -2.0482 -5.0204 15 6 9.9326 -4.3261 -5.8391 16 6 11.4058 -4.5420 -5.6059 17 8 11.9661 -3.9684 -4.6958 18 7 12.1005 -5.3724 -6.4085 19 6 13.4405 -5.5692 -6.1960 20 1 13.9394 -5.0591 -5.3852 21 6 14.1567 -6.4257 -7.0231 22 7 15.4413 -6.6139 -6.8197 23 14 13.2939 -7.3085 -8.4250 24 1 13.3583 -6.4724 -9.6507 25 1 13.9637 -8.6095 -8.6777 26 1 11.8737 -7.5453 -8.0614 27 6 4.0175 -1.4602 0.0808 28 6 3.4308 -0.7093 1.2789 29 8 2.0066 -0.6742 1.1663 30 1 -0.3633 0.5134 0.8902 31 1 -0.3634 0.5143 -0.8897 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7148 -0.1844 -2.1399 34 1 1.6442 -1.7375 -1.2710 35 1 6.0306 -1.3590 -1.9264 36 1 5.5807 -1.9931 -4.6417 37 1 5.4969 -3.4967 -3.6929 38 1 7.7456 -3.0328 -2.7575 39 1 7.8300 -1.5291 -3.7061 40 1 7.6259 -2.8384 -5.8015 41 1 7.5413 -4.3426 -4.8535 42 1 9.7451 -1.6755 -6.0141 43 1 9.5905 -1.3712 -4.2673 44 1 11.0767 -2.1063 -4.9144 45 1 9.7790 -3.9172 -6.8378 46 1 9.4076 -5.2773 -5.7512 47 1 11.6524 -5.8308 -7.1365 48 1 15.9412 -7.2121 -7.3969 49 1 3.6613 -2.4903 0.0863 50 1 5.1058 -1.4499 0.1419 51 1 3.7100 -1.2203 2.2004 52 1 3.8194 0.3090 1.2956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265944858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:22 Heat of formation + Delta-G solvation = -123.683223 kcal Electronic energy + Delta-G solvation = -29112.185212 eV Core-core repulsion = 24918.433735 eV Total energy + Delta-G solvation = -4193.751477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.77094 -39.17996 -38.81976 -37.09052 -35.35756 -34.23392 -33.91660 -33.26280 -31.73280 -31.53287 -28.45311 -28.08172 -26.84600 -25.33409 -24.41237 -23.23319 -22.58318 -21.39527 -20.96596 -20.11923 -19.35837 -18.26072 -17.50769 -16.85056 -16.62730 -16.37502 -16.01987 -15.85902 -15.47648 -15.14468 -15.00466 -14.95659 -14.58682 -14.42307 -14.06805 -13.85901 -13.50948 -13.31859 -13.10130 -13.07281 -12.78451 -12.45690 -12.39186 -12.38177 -12.20286 -11.86488 -11.81287 -11.79364 -11.62692 -11.40478 -11.36677 -11.25624 -11.03794 -10.94595 -10.80895 -10.60297 -10.31890 -9.98629 -9.83595 -9.54968 -9.40233 -8.60298 -8.19382 -7.98136 -6.32101 -3.83494 2.27717 2.76547 3.02025 3.05908 3.14440 3.28910 3.72798 3.88568 4.07118 4.09482 4.15063 4.23603 4.39776 4.64102 4.65606 4.70926 4.75953 4.84863 4.87673 4.93896 4.96168 4.98962 5.12580 5.19308 5.20347 5.27918 5.30700 5.40811 5.44319 5.47330 5.47643 5.55830 5.57872 5.63009 5.70912 5.79897 5.81679 5.84380 5.90003 5.93022 6.00407 6.11257 6.48167 6.75909 7.11387 7.13514 7.27558 7.57687 7.86706 8.13609 8.59424 8.94349 9.41605 9.82663 10.81030 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032329 B = 0.001435 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.882291 B =19514.023380 C =19892.765829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.059 0.941 4 C -0.129 4.129 5 C -0.110 4.110 6 H 0.098 0.902 7 C 0.518 3.482 8 O -0.538 6.538 9 N -0.728 5.728 10 C 0.120 3.880 11 C -0.128 4.128 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.019 3.981 15 C 0.043 3.957 16 C 0.453 3.547 17 O -0.560 6.560 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.148 4.148 28 C 0.064 3.936 29 O -0.379 6.379 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.015 0.985 43 H 0.061 0.939 44 H 0.097 0.903 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.099 0.901 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.873 13.612 10.728 32.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.077 0.923 4 C -0.167 4.167 5 C -0.131 4.131 6 H 0.116 0.884 7 C 0.303 3.697 8 O -0.415 6.415 9 N -0.380 5.380 10 C -0.004 4.004 11 C -0.166 4.166 12 C -0.071 4.071 13 N -0.243 5.243 14 C -0.129 4.129 15 C -0.088 4.088 16 C 0.239 3.761 17 O -0.442 6.442 18 N -0.231 5.231 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.187 4.187 28 C -0.013 4.013 29 O -0.299 6.299 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.236 0.764 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.033 0.967 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.098 0.902 50 H 0.099 0.901 51 H 0.117 0.883 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.822 13.295 11.279 32.834 hybrid contribution -0.090 -0.306 -2.006 2.032 sum -27.912 12.990 9.272 32.153 Atomic orbital electron populations 1.21759 0.92756 1.03210 1.02514 1.22141 0.95420 0.94857 0.84779 0.92347 1.22066 0.92830 1.03266 0.98581 1.21404 0.97952 1.00290 0.93504 0.88381 1.20541 0.82170 0.80223 0.86721 1.90715 1.55664 1.49718 1.45385 1.46028 1.07203 1.56542 1.28198 1.21341 0.94092 0.96560 0.88446 1.21784 0.92769 1.01632 1.00395 1.22003 0.88439 1.00422 0.96237 1.61538 1.04262 1.09144 1.49328 1.22605 1.03543 0.88596 0.98174 1.21906 0.95904 0.97387 0.93649 1.19638 0.87601 0.83824 0.85078 1.90518 1.70546 1.50511 1.32594 1.42214 1.10033 1.41637 1.29190 1.19427 0.81969 1.25833 1.16122 0.86272 1.25029 0.95507 0.97465 0.98103 1.69619 1.06620 1.37011 1.38909 0.86679 0.79534 0.80360 0.82858 1.19677 1.20161 1.19479 1.22224 1.01594 1.01149 0.93686 1.22553 0.81117 0.99585 0.98038 1.87957 1.20834 1.78000 1.43073 0.91749 0.90925 0.91626 0.90138 0.90027 0.76438 0.91532 0.91273 0.90093 0.91047 0.94859 0.90567 0.96667 0.92001 0.88485 0.93330 0.89242 0.79721 0.91619 0.90222 0.90106 0.88297 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.56 37.16 0.36 -0.44 16 2 C 0.09 0.54 3.26 -26.68 -0.09 0.46 16 3 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 4 C -0.13 -0.94 4.01 -26.59 -0.11 -1.04 16 5 C -0.11 -0.71 2.62 -91.59 -0.24 -0.95 16 6 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 7 C 0.52 4.81 7.16 -10.98 -0.08 4.73 16 8 O -0.54 -7.21 15.97 5.55 0.09 -7.12 16 9 N -0.73 -5.53 5.46 -60.30 -0.33 -5.86 16 10 C 0.12 1.04 5.67 -4.05 -0.02 1.02 16 11 C -0.13 -1.15 5.26 -26.73 -0.14 -1.29 16 12 C 0.06 0.65 4.96 -3.82 -0.02 0.63 16 13 N -0.52 -7.93 4.50 -244.37 -1.10 -9.03 16 14 C 0.02 0.28 9.01 60.06 0.54 0.82 16 15 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 16 C 0.45 10.15 7.51 -10.98 -0.08 10.06 16 17 O -0.56 -14.67 13.89 5.54 0.08 -14.59 16 18 N -0.59 -13.96 5.09 -10.96 -0.06 -14.02 16 19 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 20 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 23 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 27 C -0.15 -0.80 5.29 -26.60 -0.14 -0.94 16 28 C 0.06 0.34 6.84 37.20 0.25 0.59 16 29 O -0.38 -2.95 10.41 -35.23 -0.37 -3.32 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 35 H 0.40 2.07 7.96 -40.82 -0.32 1.75 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.62 6.47 -51.93 -0.34 0.29 16 40 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 41 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 42 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.06 0.77 6.30 -51.93 -0.33 0.45 16 44 H 0.10 1.82 5.88 -51.93 -0.31 1.51 16 45 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 46 H 0.09 1.30 7.93 -51.93 -0.41 0.88 16 47 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 48 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.08 0.30 7.67 -51.93 -0.40 -0.10 16 51 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 411.73 15.07 6.20 6.20 Total: -1.00 -35.01 411.73 -8.53 -43.54 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -9.06 Total: 7.83 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.04 Total: 6.66 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.71 Total: -53.75 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.20 Total: -25.03 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.01 -8.53 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265944858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.145 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds