Wall clock time and date at job start Wed Apr 1 2020 00:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47839 * 2 1 4 4 C 1.53099 * 109.47316 * 239.97020 * 2 1 3 5 5 C 1.53180 * 109.15683 * 182.40993 * 4 2 1 6 6 H 1.08998 * 109.61502 * 297.06680 * 5 4 2 7 7 C 1.50707 * 109.54271 * 176.84778 * 5 4 2 8 8 O 1.21283 * 119.99555 * 0.44134 * 7 5 4 9 9 N 1.34773 * 120.00203 * 180.44138 * 7 5 4 10 10 C 1.46491 * 120.00042 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47497 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47221 * 179.97438 * 12 11 10 14 14 C 1.46896 * 110.99945 * 293.95790 * 13 12 11 15 15 C 1.46893 * 110.99788 * 169.99762 * 13 12 11 16 16 C 1.50706 * 109.47176 * 189.99911 * 15 13 12 17 17 O 1.21295 * 119.99584 * 0.02562 * 16 15 13 18 18 N 1.34774 * 120.00020 * 180.02562 * 16 15 13 19 19 C 1.37095 * 119.99737 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00254 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99943 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00135 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99954 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47152 * 89.99894 * 23 21 19 25 25 H 1.48501 * 109.47252 * 209.99373 * 23 21 19 26 26 H 1.48500 * 109.47362 * 329.99455 * 23 21 19 27 27 C 1.53174 * 109.03831 * 56.97990 * 5 4 2 28 28 C 1.53086 * 109.16232 * 303.01641 * 27 5 4 29 29 O 1.42895 * 109.48281 * 120.03084 * 2 1 3 30 30 H 1.09001 * 109.46769 * 299.97336 * 1 2 3 31 31 H 1.08998 * 109.47353 * 59.96842 * 1 2 3 32 32 H 1.08993 * 109.47416 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.52431 * 62.50762 * 4 2 1 34 34 H 1.09000 * 109.52443 * 302.31157 * 4 2 1 35 35 H 0.97003 * 119.99871 * 0.02562 * 9 7 5 36 36 H 1.08999 * 109.47193 * 60.00143 * 10 9 7 37 37 H 1.08999 * 109.47389 * 300.00273 * 10 9 7 38 38 H 1.09004 * 109.47349 * 59.99943 * 11 10 9 39 39 H 1.08999 * 109.47081 * 300.00430 * 11 10 9 40 40 H 1.09000 * 109.46749 * 60.00331 * 12 11 10 41 41 H 1.09003 * 109.46816 * 300.00010 * 12 11 10 42 42 H 1.08997 * 109.47186 * 296.04216 * 14 13 12 43 43 H 1.08993 * 109.47654 * 56.04425 * 14 13 12 44 44 H 1.09000 * 109.47132 * 176.04519 * 14 13 12 45 45 H 1.09001 * 109.46739 * 70.00320 * 15 13 12 46 46 H 1.09000 * 109.47767 * 310.00579 * 15 13 12 47 47 H 0.96994 * 119.99756 * 0.02562 * 18 16 15 48 48 H 0.96994 * 120.00084 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.52627 * 62.92811 * 27 5 4 50 50 H 1.09005 * 109.52153 * 183.11207 * 27 5 4 51 51 H 1.09007 * 109.48181 * 177.59112 * 28 27 5 52 52 H 1.09006 * 109.48254 * 297.62503 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0404 -0.7224 -1.2497 5 6 3.5710 -0.7710 -1.2123 6 1 3.9701 0.2428 -1.2417 7 6 4.0798 -1.5478 -2.3992 8 8 3.2971 -2.0103 -3.2020 9 7 5.4046 -1.7285 -2.5687 10 6 5.8992 -2.4841 -3.7222 11 6 7.4274 -2.5415 -3.6771 12 6 7.9440 -3.3301 -4.8822 13 7 9.4114 -3.3847 -4.8392 14 6 9.9934 -2.0482 -5.0204 15 6 9.9326 -4.3261 -5.8391 16 6 11.4058 -4.5420 -5.6059 17 8 11.9661 -3.9684 -4.6958 18 7 12.1005 -5.3724 -6.4085 19 6 13.4405 -5.5692 -6.1960 20 1 13.9394 -5.0591 -5.3852 21 6 14.1567 -6.4257 -7.0231 22 7 15.4413 -6.6139 -6.8197 23 14 13.2939 -7.3085 -8.4250 24 1 13.3583 -6.4724 -9.6507 25 1 13.9637 -8.6095 -8.6777 26 1 11.8737 -7.5453 -8.0614 27 6 4.0175 -1.4602 0.0808 28 6 3.4308 -0.7093 1.2789 29 8 2.0066 -0.6742 1.1663 30 1 -0.3633 0.5134 0.8902 31 1 -0.3634 0.5143 -0.8897 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7148 -0.1844 -2.1399 34 1 1.6442 -1.7375 -1.2710 35 1 6.0306 -1.3590 -1.9264 36 1 5.5807 -1.9931 -4.6417 37 1 5.4969 -3.4967 -3.6929 38 1 7.7456 -3.0328 -2.7575 39 1 7.8300 -1.5291 -3.7061 40 1 7.6259 -2.8384 -5.8015 41 1 7.5413 -4.3426 -4.8535 42 1 9.7451 -1.6755 -6.0141 43 1 9.5905 -1.3712 -4.2673 44 1 11.0767 -2.1063 -4.9144 45 1 9.7790 -3.9172 -6.8378 46 1 9.4076 -5.2773 -5.7512 47 1 11.6524 -5.8308 -7.1365 48 1 15.9412 -7.2121 -7.3969 49 1 3.6613 -2.4903 0.0863 50 1 5.1058 -1.4499 0.1419 51 1 3.7100 -1.2203 2.2004 52 1 3.8194 0.3090 1.2956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265944858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:18 Heat of formation + Delta-G solvation = -151.813955 kcal Electronic energy + Delta-G solvation = -29113.405052 eV Core-core repulsion = 24918.433735 eV Total energy + Delta-G solvation = -4194.971317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.39582 -40.50506 -39.73463 -38.31630 -36.31222 -35.82286 -34.79555 -33.75487 -33.71906 -32.43454 -29.52437 -28.88505 -27.76131 -26.65845 -25.53108 -23.88727 -23.44476 -22.13065 -21.67134 -21.23982 -20.78027 -20.15486 -18.14754 -17.86166 -17.33125 -17.18730 -16.94601 -16.80319 -16.74237 -16.25757 -16.21788 -15.73797 -15.55282 -15.26601 -15.15307 -14.95408 -14.83821 -14.52161 -14.27040 -14.07827 -13.69467 -13.54375 -13.35084 -13.17158 -13.07313 -12.86863 -12.78775 -12.71797 -12.53263 -12.39592 -12.38372 -12.31892 -12.09575 -11.97782 -11.72730 -11.63767 -11.46060 -11.44660 -10.95693 -10.41720 -10.34852 -10.22143 -10.11185 -9.19579 -8.40479 -6.00958 1.30755 1.35540 1.44609 1.57534 1.97394 2.10189 2.23436 2.66797 2.86966 3.16008 3.27029 3.54857 3.63534 3.75803 3.93677 3.96479 4.01448 4.12728 4.17906 4.21103 4.25088 4.39557 4.43368 4.46069 4.47281 4.52611 4.54138 4.60755 4.64651 4.71501 4.74589 4.77095 4.81050 4.82918 4.99376 5.04082 5.08932 5.10488 5.19978 5.25042 5.29571 5.32343 5.44099 5.54129 5.91086 6.02523 6.21850 6.32569 6.51524 6.61207 6.89928 7.20860 7.41468 7.98962 8.77174 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032329 B = 0.001435 C = 0.001407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.882291 B =19514.023380 C =19892.765829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.076 0.924 4 C -0.127 4.127 5 C -0.105 4.105 6 H 0.125 0.875 7 C 0.515 3.485 8 O -0.585 6.585 9 N -0.717 5.717 10 C 0.127 3.873 11 C -0.115 4.115 12 C 0.058 3.942 13 N -0.541 5.541 14 C 0.023 3.977 15 C 0.053 3.947 16 C 0.451 3.549 17 O -0.605 6.605 18 N -0.593 5.593 19 C -0.327 4.327 20 H 0.056 0.944 21 C -0.014 4.014 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.258 1.258 25 H -0.276 1.276 26 H -0.231 1.231 27 C -0.143 4.143 28 C 0.059 3.941 29 O -0.402 6.402 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.415 0.585 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.030 0.970 43 H 0.085 0.915 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.118 0.882 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.059 0.941 50 H 0.102 0.898 51 H 0.107 0.893 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.369 14.061 9.723 34.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.093 0.907 4 C -0.165 4.165 5 C -0.126 4.126 6 H 0.142 0.858 7 C 0.302 3.698 8 O -0.465 6.465 9 N -0.369 5.369 10 C 0.002 3.998 11 C -0.153 4.153 12 C -0.070 4.070 13 N -0.265 5.265 14 C -0.125 4.125 15 C -0.078 4.078 16 C 0.239 3.761 17 O -0.489 6.489 18 N -0.235 5.235 19 C -0.456 4.456 20 H 0.074 0.926 21 C -0.213 4.213 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.182 1.182 25 H -0.201 1.201 26 H -0.155 1.155 27 C -0.181 4.181 28 C -0.017 4.017 29 O -0.322 6.322 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.252 0.748 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.048 0.952 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.136 0.864 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.121 0.879 51 H 0.125 0.875 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -30.326 13.769 10.303 34.862 hybrid contribution 0.729 -0.358 -1.565 1.763 sum -29.597 13.411 8.738 33.648 Atomic orbital electron populations 1.21790 0.92527 1.02695 1.03317 1.22208 0.95753 0.95309 0.83861 0.90658 1.22012 0.93598 1.01820 0.99077 1.21429 0.97275 1.01242 0.92634 0.85755 1.21040 0.82178 0.79714 0.86856 1.90695 1.56847 1.51757 1.47198 1.45942 1.07067 1.55813 1.28080 1.21189 0.93722 0.96184 0.88693 1.21640 0.92641 1.01627 0.99387 1.22085 0.85542 1.01644 0.97688 1.61477 1.06745 1.08901 1.49389 1.22477 1.00799 0.89319 0.99880 1.21844 0.90974 0.99527 0.95434 1.20912 0.90116 0.81663 0.83411 1.90510 1.72349 1.51653 1.34366 1.42051 1.08430 1.42675 1.30382 1.19004 0.84350 1.26756 1.15516 0.92595 1.26079 0.96124 0.97781 1.01269 1.69802 1.08946 1.38101 1.40742 0.85387 0.79926 0.78331 0.78025 1.18236 1.20103 1.15477 1.22208 1.02878 0.99888 0.93172 1.22729 0.80007 1.00753 0.98202 1.87935 1.22360 1.78402 1.43522 0.91326 0.89727 0.92820 0.90461 0.92642 0.74772 0.91938 0.92192 0.90520 0.90346 0.93424 0.89620 0.95197 0.89691 0.93040 0.90493 0.86362 0.77577 0.91200 0.92208 0.87911 0.87450 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.56 71.98 0.69 -0.82 16 2 C 0.09 0.99 3.26 30.63 0.10 1.09 16 3 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 4 C -0.13 -1.78 4.01 30.69 0.12 -1.65 16 5 C -0.10 -1.17 2.62 -11.42 -0.03 -1.20 16 6 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 7 C 0.51 8.93 7.16 87.66 0.63 9.56 16 8 O -0.58 -15.58 15.97 -3.04 -0.05 -15.63 16 9 N -0.72 -9.35 5.46 -463.08 -2.53 -11.88 16 10 C 0.13 1.93 5.67 86.38 0.49 2.42 16 11 C -0.11 -1.75 5.26 30.59 0.16 -1.59 16 12 C 0.06 1.10 4.96 86.30 0.43 1.53 16 13 N -0.54 -15.21 4.50 -927.06 -4.17 -19.39 16 14 C 0.02 0.66 9.01 127.69 1.15 1.81 16 15 C 0.05 1.60 5.45 85.56 0.47 2.07 16 16 C 0.45 20.12 7.51 87.66 0.66 20.78 16 17 O -0.60 -32.88 13.89 -3.08 -0.04 -32.92 16 18 N -0.59 -27.79 5.09 -306.98 -1.56 -29.35 16 19 C -0.33 -19.08 10.16 84.04 0.85 -18.22 16 20 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 21 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 22 N -0.94 -56.28 13.96 21.66 0.30 -55.98 16 23 Si 0.96 38.64 27.74 68.60 1.90 40.54 16 24 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 25 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 27 C -0.14 -1.29 5.29 30.68 0.16 -1.12 16 28 C 0.06 0.51 6.84 72.01 0.49 1.00 16 29 O -0.40 -5.80 10.41 -148.98 -1.55 -7.35 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.06 8.03 -2.39 -0.02 1.04 16 35 H 0.42 3.07 7.96 -92.71 -0.74 2.33 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.08 1.11 6.47 -2.39 -0.02 1.09 16 40 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 41 H 0.09 1.49 7.93 -2.39 -0.02 1.47 16 42 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 1.95 6.30 -2.39 -0.02 1.93 16 44 H 0.05 1.95 5.88 -2.39 -0.01 1.94 16 45 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 46 H 0.12 2.92 7.93 -2.39 -0.02 2.90 16 47 H 0.39 15.07 5.76 -92.71 -0.53 14.53 16 48 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 49 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.10 0.46 7.67 -2.38 -0.02 0.44 16 51 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 52 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 Total: -1.00 -82.99 411.73 -1.27 -84.26 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.41 Total: 32.36 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.84 Total: 15.33 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -7.96 Total: -116.60 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -1.64 Total: -55.90 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.90 Total: 40.54 kcal Total: -82.99 -1.27 -84.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265944858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.554 kcal (2) G-P(sol) polarization free energy of solvation -82.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds