Wall clock time and date at job start Wed Apr 1 2020 00:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47577 * 2 1 4 4 C 1.53085 * 109.49026 * 239.96692 * 2 1 3 5 5 C 1.53183 * 109.16108 * 182.40366 * 4 2 1 6 6 H 1.09000 * 109.61300 * 176.89614 * 5 4 2 7 7 C 1.50703 * 109.54260 * 297.11462 * 5 4 2 8 8 O 1.21279 * 119.99926 * 359.55464 * 7 5 4 9 9 N 1.34775 * 119.99773 * 179.55863 * 7 5 4 10 10 C 1.46504 * 119.99531 * 179.97438 * 9 7 5 11 11 C 1.53006 * 109.46883 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47114 * 180.02562 * 12 11 10 14 14 C 1.46904 * 111.00005 * 293.95636 * 13 12 11 15 15 C 1.46896 * 111.00203 * 170.00532 * 13 12 11 16 16 C 1.50703 * 109.47373 * 190.00058 * 15 13 12 17 17 O 1.21296 * 119.99571 * 359.97438 * 16 15 13 18 18 N 1.34772 * 120.00154 * 179.97438 * 16 15 13 19 19 C 1.37102 * 120.00218 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99305 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00184 * 179.97438 * 19 18 16 22 22 N 1.31407 * 119.99911 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99753 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47325 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46991 * 120.00053 * 23 21 19 26 26 H 1.48499 * 109.47011 * 239.99732 * 23 21 19 27 27 C 1.53174 * 109.03630 * 56.98346 * 5 4 2 28 28 C 1.53100 * 109.16051 * 303.01627 * 27 5 4 29 29 O 1.42901 * 109.41457 * 57.61439 * 28 27 5 30 30 H 1.09001 * 109.47379 * 299.97920 * 1 2 3 31 31 H 1.09006 * 109.47260 * 59.98304 * 1 2 3 32 32 H 1.08995 * 109.47052 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.52492 * 62.49848 * 4 2 1 34 34 H 1.09001 * 109.52534 * 302.31132 * 4 2 1 35 35 H 0.96992 * 120.00503 * 359.97438 * 9 7 5 36 36 H 1.09001 * 109.46891 * 60.00097 * 10 9 7 37 37 H 1.08993 * 109.47378 * 299.99469 * 10 9 7 38 38 H 1.09001 * 109.46801 * 300.00349 * 11 10 9 39 39 H 1.09001 * 109.46998 * 59.99945 * 11 10 9 40 40 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 41 41 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 42 42 H 1.08997 * 109.47401 * 59.99501 * 14 13 12 43 43 H 1.09000 * 109.47175 * 180.02562 * 14 13 12 44 44 H 1.09001 * 109.46714 * 299.99906 * 14 13 12 45 45 H 1.09005 * 109.46645 * 309.99483 * 15 13 12 46 46 H 1.09001 * 109.47740 * 69.99499 * 15 13 12 47 47 H 0.97001 * 120.00374 * 359.97438 * 18 16 15 48 48 H 0.97001 * 119.99759 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.52751 * 62.92184 * 27 5 4 50 50 H 1.08999 * 109.52112 * 183.11838 * 27 5 4 51 51 H 1.09005 * 109.47536 * 177.59356 * 28 27 5 52 52 H 1.08999 * 109.47887 * 297.61731 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0408 -0.7223 -1.2494 5 6 3.5714 -0.7706 -1.2117 6 1 3.9409 -1.3315 -2.0702 7 6 4.1212 0.6320 -1.2514 8 8 3.3650 1.5782 -1.3127 9 7 5.4532 0.8348 -1.2188 10 6 5.9876 2.1983 -1.2580 11 6 7.5161 2.1486 -1.2084 12 6 8.0742 3.5725 -1.2487 13 7 9.5417 3.5247 -1.2017 14 6 10.0104 3.0019 0.0886 15 6 10.1205 4.8468 -1.4755 16 6 11.6100 4.7142 -1.6622 17 8 12.1375 3.6255 -1.5751 18 7 12.3559 5.8053 -1.9258 19 6 13.7111 5.6848 -2.0950 20 1 14.1807 4.7154 -2.0176 21 6 14.4800 6.8097 -2.3673 22 7 13.9082 7.9890 -2.4631 23 14 16.3263 6.6453 -2.5987 24 1 16.7198 5.2218 -2.4439 25 1 16.6989 7.1164 -3.9568 26 1 17.0279 7.4669 -1.5799 27 6 4.0178 -1.4597 0.0814 28 6 3.4306 -0.7088 1.2794 29 8 2.0065 -0.6740 1.1666 30 1 -0.3634 0.5135 0.8902 31 1 -0.3634 0.5141 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7151 -0.1845 -2.1398 34 1 1.6447 -1.7375 -1.2707 35 1 6.0579 0.0781 -1.1695 36 1 5.6147 2.7594 -0.4011 37 1 5.6694 2.6870 -2.1787 38 1 7.8340 1.6599 -0.2874 39 1 7.8893 1.5873 -2.0651 40 1 7.7562 4.0615 -2.1694 41 1 7.7010 4.1333 -0.3917 42 1 9.6230 1.9936 0.2345 43 1 11.1001 2.9776 0.0966 44 1 9.6558 3.6471 0.8924 45 1 9.6759 5.2573 -2.3822 46 1 9.9172 5.5132 -0.6372 47 1 11.9340 6.6760 -1.9957 48 1 14.4451 8.7743 -2.6528 49 1 3.6617 -2.4898 0.0870 50 1 5.1060 -1.4491 0.1427 51 1 3.7099 -1.2197 2.2009 52 1 3.8192 0.3094 1.2962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265944859.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:35 Heat of formation + Delta-G solvation = -126.938070 kcal Electronic energy + Delta-G solvation = -29568.000282 eV Core-core repulsion = 25374.107665 eV Total energy + Delta-G solvation = -4193.892617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.05395 -38.84795 -38.56502 -36.95857 -35.34600 -34.20664 -33.86285 -33.10705 -31.52883 -31.20905 -28.32153 -27.90253 -26.74424 -25.17565 -24.48213 -23.27270 -22.61848 -21.73277 -21.04615 -19.76614 -19.15295 -17.84949 -17.08120 -16.77741 -16.62879 -16.40826 -16.13272 -15.83095 -15.42203 -15.11664 -14.78161 -14.62928 -14.48946 -14.25260 -14.18567 -13.68325 -13.48261 -13.41988 -13.02787 -12.83161 -12.78532 -12.40225 -12.34950 -12.25821 -12.15154 -11.89267 -11.74921 -11.51080 -11.47786 -11.28612 -11.27036 -11.17411 -10.94679 -10.83283 -10.76116 -10.35157 -10.23605 -10.14783 -9.60847 -9.49697 -9.36596 -8.47148 -7.99084 -7.87445 -6.42695 -3.83505 2.26800 2.79212 3.15402 3.26062 3.33075 3.43998 3.89298 3.95774 4.10396 4.20707 4.23261 4.30177 4.50572 4.61590 4.76889 4.81906 4.91027 5.00566 5.03179 5.06187 5.06978 5.16341 5.23214 5.24251 5.33392 5.36610 5.37369 5.45223 5.50823 5.51717 5.55940 5.61278 5.67418 5.71355 5.80811 5.87000 5.90319 5.95722 5.97056 6.05243 6.14123 6.27352 6.52871 6.92659 7.12694 7.24063 7.36584 7.54485 7.86722 8.05790 8.60942 9.17347 9.53734 10.05451 10.75130 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036861 B = 0.001473 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.421939 B =19008.295228 C =19266.897065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.084 0.916 4 C -0.128 4.128 5 C -0.114 4.114 6 H 0.103 0.897 7 C 0.515 3.485 8 O -0.536 6.536 9 N -0.727 5.727 10 C 0.119 3.881 11 C -0.127 4.127 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.147 4.147 28 C 0.060 3.940 29 O -0.382 6.382 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.013 0.987 45 H 0.088 0.912 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.097 0.903 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.991 -16.084 4.587 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.101 0.899 4 C -0.166 4.166 5 C -0.135 4.135 6 H 0.121 0.879 7 C 0.301 3.699 8 O -0.413 6.413 9 N -0.379 5.379 10 C -0.005 4.005 11 C -0.165 4.165 12 C -0.071 4.071 13 N -0.243 5.243 14 C -0.128 4.128 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.185 4.185 28 C -0.017 4.017 29 O -0.301 6.301 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.236 0.764 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.032 0.968 45 H 0.106 0.894 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.097 0.903 51 H 0.115 0.885 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -24.043 -16.326 4.323 29.382 hybrid contribution 1.009 0.910 0.169 1.369 sum -23.034 -15.416 4.493 28.079 Atomic orbital electron populations 1.21737 0.93220 1.02484 1.02505 1.22379 0.95019 0.96856 0.84082 0.89855 1.22009 0.92657 1.01919 0.99983 1.21450 0.97841 0.93763 1.00431 0.87906 1.20618 0.82213 0.91368 0.75711 1.90669 1.57498 1.44049 1.49121 1.46057 1.06983 1.09596 1.75245 1.21357 0.93694 0.82917 1.02485 1.21777 0.92589 0.98522 1.03647 1.21999 0.88333 0.95631 1.01136 1.61547 1.05350 1.24262 1.33102 1.22577 1.04094 0.98436 0.87649 1.21867 0.95611 0.89837 1.01258 1.19735 0.87561 0.85349 0.84411 1.90479 1.73267 1.26503 1.55998 1.41879 1.07848 1.08292 1.62107 1.19751 0.82078 0.95873 1.45126 0.87854 1.25261 1.00669 0.94678 0.97351 1.69619 1.36732 0.98692 1.49258 0.85802 0.82161 0.78596 0.77791 1.19226 1.20756 1.20788 1.22211 1.01479 1.00865 0.93973 1.22537 0.81635 0.99516 0.98032 1.87910 1.20392 1.78214 1.43574 0.91950 0.91044 0.92160 0.90076 0.90475 0.76430 0.91539 0.91210 0.91115 0.90160 0.90603 0.94901 0.92146 0.88605 0.96806 0.89378 0.93449 0.77492 0.91929 0.89650 0.90281 0.88533 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.57 37.16 0.36 -0.70 16 2 C 0.07 0.67 2.97 -26.69 -0.08 0.59 16 3 H 0.08 0.94 5.82 -51.93 -0.30 0.64 16 4 C -0.13 -0.95 4.56 -26.59 -0.12 -1.07 16 5 C -0.11 -0.75 3.04 -91.59 -0.28 -1.03 16 6 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 7 C 0.51 4.71 5.82 -10.98 -0.06 4.65 16 8 O -0.54 -6.82 13.85 5.56 0.08 -6.74 16 9 N -0.73 -5.55 5.43 -60.29 -0.33 -5.88 16 10 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 11 C -0.13 -1.20 5.25 -26.73 -0.14 -1.34 16 12 C 0.06 0.68 4.96 -3.83 -0.02 0.67 16 13 N -0.52 -8.29 4.50 -244.37 -1.10 -9.39 16 14 C 0.02 0.31 8.96 60.07 0.54 0.85 16 15 C 0.05 0.80 5.45 -4.98 -0.03 0.78 16 16 C 0.44 10.36 7.47 -10.99 -0.08 10.27 16 17 O -0.58 -15.33 13.91 5.54 0.08 -15.25 16 18 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 23 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 C -0.15 -0.81 5.57 -26.59 -0.15 -0.95 16 28 C 0.06 0.45 6.62 37.21 0.25 0.69 16 29 O -0.38 -3.71 10.41 -35.23 -0.37 -4.07 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.63 8.02 -51.93 -0.42 0.21 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 2.14 7.86 -40.82 -0.32 1.82 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.64 6.55 -51.93 -0.34 0.30 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 41 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 42 H 0.06 0.79 6.47 -51.93 -0.34 0.46 16 43 H 0.10 1.85 5.82 -51.93 -0.30 1.54 16 44 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.09 1.40 7.93 -51.93 -0.41 0.99 16 46 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.31 7.49 -51.93 -0.39 -0.08 16 51 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.05 0.42 7.38 -51.93 -0.38 0.03 16 LS Contribution 408.85 15.07 6.16 6.16 Total: -1.00 -33.23 408.85 -8.86 -42.09 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -8.94 Total: 8.64 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.08 Total: 6.52 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.76 Total: -53.23 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.21 Total: -26.07 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.23 -8.86 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265944859.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.847 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds