Wall clock time and date at job start Wed Apr 1 2020 00:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47577 * 2 1 4 4 C 1.53085 * 109.49026 * 239.96692 * 2 1 3 5 5 C 1.53183 * 109.16108 * 182.40366 * 4 2 1 6 6 H 1.09000 * 109.61300 * 176.89614 * 5 4 2 7 7 C 1.50703 * 109.54260 * 297.11462 * 5 4 2 8 8 O 1.21279 * 119.99926 * 359.55464 * 7 5 4 9 9 N 1.34775 * 119.99773 * 179.55863 * 7 5 4 10 10 C 1.46504 * 119.99531 * 179.97438 * 9 7 5 11 11 C 1.53006 * 109.46883 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47114 * 180.02562 * 12 11 10 14 14 C 1.46904 * 111.00005 * 293.95636 * 13 12 11 15 15 C 1.46896 * 111.00203 * 170.00532 * 13 12 11 16 16 C 1.50703 * 109.47373 * 190.00058 * 15 13 12 17 17 O 1.21296 * 119.99571 * 359.97438 * 16 15 13 18 18 N 1.34772 * 120.00154 * 179.97438 * 16 15 13 19 19 C 1.37102 * 120.00218 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99305 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00184 * 179.97438 * 19 18 16 22 22 N 1.31407 * 119.99911 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99753 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47325 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46991 * 120.00053 * 23 21 19 26 26 H 1.48499 * 109.47011 * 239.99732 * 23 21 19 27 27 C 1.53174 * 109.03630 * 56.98346 * 5 4 2 28 28 C 1.53100 * 109.16051 * 303.01627 * 27 5 4 29 29 O 1.42901 * 109.41457 * 57.61439 * 28 27 5 30 30 H 1.09001 * 109.47379 * 299.97920 * 1 2 3 31 31 H 1.09006 * 109.47260 * 59.98304 * 1 2 3 32 32 H 1.08995 * 109.47052 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.52492 * 62.49848 * 4 2 1 34 34 H 1.09001 * 109.52534 * 302.31132 * 4 2 1 35 35 H 0.96992 * 120.00503 * 359.97438 * 9 7 5 36 36 H 1.09001 * 109.46891 * 60.00097 * 10 9 7 37 37 H 1.08993 * 109.47378 * 299.99469 * 10 9 7 38 38 H 1.09001 * 109.46801 * 300.00349 * 11 10 9 39 39 H 1.09001 * 109.46998 * 59.99945 * 11 10 9 40 40 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 41 41 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 42 42 H 1.08997 * 109.47401 * 59.99501 * 14 13 12 43 43 H 1.09000 * 109.47175 * 180.02562 * 14 13 12 44 44 H 1.09001 * 109.46714 * 299.99906 * 14 13 12 45 45 H 1.09005 * 109.46645 * 309.99483 * 15 13 12 46 46 H 1.09001 * 109.47740 * 69.99499 * 15 13 12 47 47 H 0.97001 * 120.00374 * 359.97438 * 18 16 15 48 48 H 0.97001 * 119.99759 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.52751 * 62.92184 * 27 5 4 50 50 H 1.08999 * 109.52112 * 183.11838 * 27 5 4 51 51 H 1.09005 * 109.47536 * 177.59356 * 28 27 5 52 52 H 1.08999 * 109.47887 * 297.61731 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0408 -0.7223 -1.2494 5 6 3.5714 -0.7706 -1.2117 6 1 3.9409 -1.3315 -2.0702 7 6 4.1212 0.6320 -1.2514 8 8 3.3650 1.5782 -1.3127 9 7 5.4532 0.8348 -1.2188 10 6 5.9876 2.1983 -1.2580 11 6 7.5161 2.1486 -1.2084 12 6 8.0742 3.5725 -1.2487 13 7 9.5417 3.5247 -1.2017 14 6 10.0104 3.0019 0.0886 15 6 10.1205 4.8468 -1.4755 16 6 11.6100 4.7142 -1.6622 17 8 12.1375 3.6255 -1.5751 18 7 12.3559 5.8053 -1.9258 19 6 13.7111 5.6848 -2.0950 20 1 14.1807 4.7154 -2.0176 21 6 14.4800 6.8097 -2.3673 22 7 13.9082 7.9890 -2.4631 23 14 16.3263 6.6453 -2.5987 24 1 16.7198 5.2218 -2.4439 25 1 16.6989 7.1164 -3.9568 26 1 17.0279 7.4669 -1.5799 27 6 4.0178 -1.4597 0.0814 28 6 3.4306 -0.7088 1.2794 29 8 2.0065 -0.6740 1.1666 30 1 -0.3634 0.5135 0.8902 31 1 -0.3634 0.5141 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7151 -0.1845 -2.1398 34 1 1.6447 -1.7375 -1.2707 35 1 6.0579 0.0781 -1.1695 36 1 5.6147 2.7594 -0.4011 37 1 5.6694 2.6870 -2.1787 38 1 7.8340 1.6599 -0.2874 39 1 7.8893 1.5873 -2.0651 40 1 7.7562 4.0615 -2.1694 41 1 7.7010 4.1333 -0.3917 42 1 9.6230 1.9936 0.2345 43 1 11.1001 2.9776 0.0966 44 1 9.6558 3.6471 0.8924 45 1 9.6759 5.2573 -2.3822 46 1 9.9172 5.5132 -0.6372 47 1 11.9340 6.6760 -1.9957 48 1 14.4451 8.7743 -2.6528 49 1 3.6617 -2.4898 0.0870 50 1 5.1060 -1.4491 0.1427 51 1 3.7099 -1.2197 2.2009 52 1 3.8192 0.3094 1.2962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265944859.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:32 Heat of formation + Delta-G solvation = -152.281492 kcal Electronic energy + Delta-G solvation = -29569.099255 eV Core-core repulsion = 25374.107665 eV Total energy + Delta-G solvation = -4194.991591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.70254 -40.38794 -39.39974 -38.24497 -36.30485 -35.79238 -34.79924 -33.72059 -33.27799 -32.36553 -29.38393 -28.86215 -27.73580 -26.68931 -25.47646 -24.10371 -23.42541 -22.40792 -22.01288 -20.96986 -20.44882 -19.84379 -17.87193 -17.73277 -17.33680 -17.24849 -17.07436 -16.79654 -16.57179 -16.44295 -16.18798 -15.83996 -15.43396 -15.40130 -15.06271 -14.87113 -14.78576 -14.68903 -13.75867 -13.68705 -13.49524 -13.46270 -13.36738 -13.22963 -13.02602 -12.94183 -12.84593 -12.76207 -12.70997 -12.50720 -12.37969 -12.32632 -12.10725 -12.05159 -11.71774 -11.64276 -11.47484 -11.45561 -10.82340 -10.29074 -10.24095 -10.07978 -9.99095 -9.20117 -8.45930 -5.94481 1.37009 1.42248 1.56346 1.59156 2.06541 2.12077 2.29900 2.81191 2.85289 3.21130 3.43384 3.55508 3.69522 3.79324 3.95854 3.96533 4.01706 4.11222 4.16067 4.27075 4.32966 4.39794 4.42172 4.48654 4.52839 4.54879 4.60520 4.63542 4.67279 4.72031 4.75281 4.79312 4.80573 4.85194 4.95969 5.04289 5.08081 5.09520 5.18930 5.22122 5.27100 5.31476 5.42225 5.46031 5.88960 6.07854 6.23023 6.30290 6.52710 6.61692 7.14119 7.22714 7.57790 8.13522 8.71736 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036861 B = 0.001473 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.421939 B =19008.295228 C =19266.897065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.055 0.945 4 C -0.126 4.126 5 C -0.110 4.110 6 H 0.129 0.871 7 C 0.511 3.489 8 O -0.577 6.577 9 N -0.717 5.717 10 C 0.128 3.872 11 C -0.113 4.113 12 C 0.057 3.943 13 N -0.536 5.536 14 C 0.025 3.975 15 C 0.056 3.944 16 C 0.442 3.558 17 O -0.613 6.613 18 N -0.576 5.576 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.271 1.271 27 C -0.140 4.140 28 C 0.052 3.948 29 O -0.398 6.398 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.415 0.585 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.026 0.974 45 H 0.109 0.891 46 H 0.065 0.935 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.099 0.901 50 H 0.099 0.901 51 H 0.111 0.889 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.421 -17.354 4.471 30.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.013 3.987 3 H 0.073 0.927 4 C -0.164 4.164 5 C -0.131 4.131 6 H 0.147 0.853 7 C 0.298 3.702 8 O -0.457 6.457 9 N -0.370 5.370 10 C 0.003 3.997 11 C -0.151 4.151 12 C -0.071 4.071 13 N -0.261 5.261 14 C -0.123 4.123 15 C -0.075 4.075 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.178 4.178 28 C -0.025 4.025 29 O -0.318 6.318 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.252 0.748 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.127 0.873 46 H 0.083 0.917 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.129 0.871 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -24.477 -17.607 4.212 30.445 hybrid contribution 1.086 1.289 0.246 1.703 sum -23.391 -16.318 4.459 28.867 Atomic orbital electron populations 1.21744 0.92386 1.03086 1.02587 1.22359 0.95820 0.95616 0.84876 0.92727 1.21989 0.93443 1.02343 0.98635 1.21514 0.97156 0.92324 1.02152 0.85335 1.21130 0.82212 0.92073 0.74764 1.90660 1.58510 1.45543 1.51024 1.45956 1.06905 1.09626 1.74466 1.21162 0.93232 0.83543 1.01733 1.21619 0.92518 0.97022 1.03939 1.22089 0.85557 0.97434 1.01980 1.61516 1.07829 1.23254 1.33480 1.22467 1.01478 1.00296 0.88063 1.21745 0.91278 0.91478 1.02980 1.20779 0.89909 0.84210 0.82207 1.90457 1.74775 1.27793 1.56918 1.41956 1.07378 1.09014 1.62988 1.19704 0.83677 0.95419 1.47315 0.90246 1.26031 1.04747 0.94100 0.96438 1.69680 1.38275 0.99151 1.49168 0.84869 0.76944 0.78275 0.78233 1.19726 1.19704 1.19678 1.22208 1.02627 1.00897 0.92042 1.22714 0.80739 0.99116 0.99922 1.87884 1.21754 1.78136 1.44041 0.92549 0.90347 0.91208 0.90792 0.88866 0.74813 0.92285 0.92097 0.90304 0.90375 0.89944 0.93829 0.89656 0.92803 0.95518 0.87343 0.91667 0.77092 0.91369 0.88214 0.88215 0.87106 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.57 71.98 0.69 -1.37 16 2 C 0.07 1.27 2.97 30.62 0.09 1.36 16 3 H 0.05 1.30 5.82 -2.39 -0.01 1.29 16 4 C -0.13 -1.71 4.56 30.68 0.14 -1.57 16 5 C -0.11 -1.22 3.04 -11.42 -0.03 -1.25 16 6 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 7 C 0.51 8.76 5.82 87.66 0.51 9.27 16 8 O -0.58 -14.79 13.85 -3.03 -0.04 -14.83 16 9 N -0.72 -9.62 5.43 -463.05 -2.52 -12.13 16 10 C 0.13 2.07 5.67 86.38 0.49 2.56 16 11 C -0.11 -1.86 5.25 30.60 0.16 -1.70 16 12 C 0.06 1.23 4.96 86.30 0.43 1.65 16 13 N -0.54 -16.33 4.50 -927.06 -4.17 -20.51 16 14 C 0.02 0.74 8.96 127.69 1.14 1.89 16 15 C 0.06 1.92 5.45 85.56 0.47 2.39 16 16 C 0.44 20.83 7.47 87.66 0.66 21.49 16 17 O -0.61 -33.34 13.91 -3.08 -0.04 -33.38 16 18 N -0.58 -29.48 5.29 -306.98 -1.62 -31.11 16 19 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -49.73 13.05 21.66 0.28 -49.44 16 23 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 C -0.14 -1.15 5.57 30.69 0.17 -0.98 16 28 C 0.05 0.71 6.62 72.02 0.48 1.19 16 29 O -0.40 -7.51 10.41 -148.98 -1.55 -9.06 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.10 8.02 -2.39 -0.02 1.08 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.41 3.25 7.86 -92.71 -0.73 2.52 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.20 6.55 -2.39 -0.02 1.18 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.67 7.93 -2.39 -0.02 1.65 16 41 H 0.04 0.86 8.12 -2.39 -0.02 0.84 16 42 H 0.08 2.07 6.47 -2.39 -0.02 2.06 16 43 H 0.05 2.09 5.82 -2.39 -0.01 2.08 16 44 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.11 3.26 7.93 -2.38 -0.02 3.24 16 46 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 47 H 0.40 19.28 7.90 -92.71 -0.73 18.54 16 48 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 49 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.10 0.42 7.49 -2.39 -0.02 0.40 16 51 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 52 H 0.03 0.52 7.38 -2.39 -0.02 0.50 16 Total: -1.00 -73.97 408.85 -1.50 -75.47 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.54 Total: 33.45 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 6.67 Total: 16.70 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -8.03 Total: -113.19 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -1.64 Total: -57.27 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -73.97 -1.50 -75.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265944859.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.811 kcal (2) G-P(sol) polarization free energy of solvation -73.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds