Wall clock time and date at job start Wed Apr 1 2020 00:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47997 * 2 1 4 4 C 1.53091 * 109.47975 * 120.04103 * 2 1 3 5 5 C 1.53174 * 109.16086 * 177.58904 * 4 2 1 6 6 H 1.09001 * 109.61615 * 183.10452 * 5 4 2 7 7 C 1.50707 * 109.54373 * 62.88699 * 5 4 2 8 8 O 1.21281 * 119.99641 * 0.44300 * 7 5 4 9 9 N 1.34773 * 120.00064 * 180.44500 * 7 5 4 10 10 C 1.46501 * 120.00025 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.46979 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46809 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46967 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99873 * 293.95146 * 13 12 11 15 15 C 1.46895 * 110.99802 * 169.99724 * 13 12 11 16 16 C 1.50706 * 109.47182 * 189.99771 * 15 13 12 17 17 O 1.21297 * 119.99667 * 0.02562 * 16 15 13 18 18 N 1.34773 * 120.00081 * 179.72734 * 16 15 13 19 19 C 1.37095 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00160 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00380 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99401 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00554 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46783 * 60.00161 * 23 21 19 25 25 H 1.48496 * 109.47291 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46865 * 300.00343 * 23 21 19 27 27 C 1.53179 * 109.03906 * 303.02075 * 5 4 2 28 28 C 1.53087 * 109.16500 * 56.97684 * 27 5 4 29 29 O 1.42898 * 109.41758 * 302.39609 * 28 27 5 30 30 H 1.09003 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46926 * 300.01542 * 1 2 3 32 32 H 1.09001 * 109.47002 * 60.02040 * 1 2 3 33 33 H 1.09001 * 109.52514 * 57.68801 * 4 2 1 34 34 H 1.09003 * 109.52110 * 297.49378 * 4 2 1 35 35 H 0.97001 * 120.00067 * 359.97438 * 9 7 5 36 36 H 1.08994 * 109.47287 * 59.99458 * 10 9 7 37 37 H 1.09000 * 109.46742 * 299.99114 * 10 9 7 38 38 H 1.08994 * 109.47552 * 59.99621 * 11 10 9 39 39 H 1.09000 * 109.46661 * 299.99165 * 11 10 9 40 40 H 1.08994 * 109.47298 * 59.99557 * 12 11 10 41 41 H 1.09002 * 109.46710 * 299.99612 * 12 11 10 42 42 H 1.09002 * 109.46967 * 296.04828 * 14 13 12 43 43 H 1.08998 * 109.47153 * 56.04149 * 14 13 12 44 44 H 1.08994 * 109.47180 * 176.05052 * 14 13 12 45 45 H 1.09001 * 109.47613 * 70.00117 * 15 13 12 46 46 H 1.08998 * 109.47678 * 310.00012 * 15 13 12 47 47 H 0.96998 * 120.00525 * 359.97438 * 18 16 15 48 48 H 0.97004 * 120.00112 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.52200 * 176.88817 * 27 5 4 50 50 H 1.09007 * 109.51984 * 297.07410 * 27 5 4 51 51 H 1.09008 * 109.47747 * 62.37974 * 28 27 5 52 52 H 1.08995 * 109.48128 * 182.40741 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7225 1.2494 5 6 3.5711 -0.7712 1.2119 6 1 3.9405 -1.3322 2.0703 7 6 4.1212 0.6313 1.2518 8 8 3.3651 1.5777 1.3131 9 7 5.4532 0.8339 1.2193 10 6 5.9880 2.1973 1.2587 11 6 7.5164 2.1472 1.2105 12 6 8.0748 3.5711 1.2509 13 7 9.5424 3.5230 1.2053 14 6 10.0866 2.8995 2.4190 15 6 10.1070 4.8640 1.0037 16 6 11.5823 4.7501 0.7176 17 8 12.1111 3.6591 0.6844 18 7 12.3127 5.8602 0.4927 19 6 13.6546 5.7566 0.2319 20 1 14.1265 4.7854 0.2071 21 6 14.4077 6.9009 -0.0005 22 7 13.8334 8.0825 0.0292 23 14 16.2363 6.7598 -0.3551 24 1 16.4418 5.9410 -1.5767 25 1 16.8058 8.1150 -0.5654 26 1 16.9150 6.1112 0.7955 27 6 4.0176 -1.4601 -0.0813 28 6 3.4307 -0.7092 -1.2793 29 8 2.0066 -0.6740 -1.1666 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5141 0.8898 32 1 -0.3633 0.5135 -0.8902 33 1 1.6443 -1.7378 1.2706 34 1 1.7149 -0.1847 2.1398 35 1 6.0579 0.0770 1.1706 36 1 5.6696 2.6860 2.1794 37 1 5.6153 2.7585 0.4018 38 1 7.8351 1.6583 0.2899 39 1 7.8887 1.5861 2.0676 40 1 7.7561 4.0603 2.1712 41 1 7.7025 4.1318 0.3936 42 1 9.8423 3.5153 3.2846 43 1 9.6519 1.9079 2.5443 44 1 11.1694 2.8129 2.3287 45 1 9.9564 5.4607 1.9034 46 1 9.6096 5.3449 0.1614 47 1 11.8889 6.7324 0.5146 48 1 14.3591 8.8815 -0.1326 49 1 5.1059 -1.4498 -0.1425 50 1 3.6612 -2.4902 -0.0870 51 1 3.8193 0.3092 -1.2958 52 1 3.7099 -1.2199 -2.2008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265944860.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:50 Heat of formation + Delta-G solvation = -126.662489 kcal Electronic energy + Delta-G solvation = -29570.265592 eV Core-core repulsion = 25376.384924 eV Total energy + Delta-G solvation = -4193.880667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04732 -38.84095 -38.55610 -36.95878 -35.34450 -34.19743 -33.85777 -33.09506 -31.52737 -31.20546 -28.30928 -27.90054 -26.74257 -25.17112 -24.47384 -23.26232 -22.61460 -21.72673 -21.04029 -19.76102 -19.15069 -17.84658 -17.07626 -16.75556 -16.61618 -16.45290 -16.04158 -15.88987 -15.39821 -15.07599 -14.84501 -14.67151 -14.38995 -14.25553 -14.17270 -13.73106 -13.47929 -13.37627 -13.03209 -12.83004 -12.77918 -12.39032 -12.32067 -12.27285 -12.14016 -11.89020 -11.74296 -11.49166 -11.48179 -11.28314 -11.25690 -11.16199 -10.91856 -10.84854 -10.72384 -10.44676 -10.22056 -10.14203 -9.59756 -9.47588 -9.36528 -8.47478 -7.98724 -7.86462 -6.42070 -3.83007 2.26820 2.79279 3.19449 3.25310 3.29454 3.45807 3.89611 3.96145 4.11040 4.21441 4.23480 4.30933 4.51914 4.62059 4.76918 4.83251 4.91400 5.00610 5.04189 5.06898 5.07981 5.17860 5.23673 5.24737 5.34514 5.36140 5.39080 5.45620 5.50934 5.52922 5.55883 5.62174 5.67721 5.72122 5.81821 5.87556 5.90212 5.96152 5.96529 6.05372 6.14184 6.27645 6.54070 6.94486 7.12696 7.24170 7.36747 7.54466 7.86763 8.05700 8.61484 9.17578 9.54058 10.05980 10.75568 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029586 B = 0.001490 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.155728 B =18790.072372 C =18806.667211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.084 0.916 4 C -0.128 4.128 5 C -0.113 4.113 6 H 0.102 0.898 7 C 0.515 3.485 8 O -0.536 6.536 9 N -0.727 5.727 10 C 0.119 3.881 11 C -0.127 4.127 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.147 4.147 28 C 0.060 3.940 29 O -0.381 6.381 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.401 0.599 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.014 0.986 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.049 0.951 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.740 -16.348 3.071 28.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.102 0.898 4 C -0.166 4.166 5 C -0.135 4.135 6 H 0.120 0.880 7 C 0.301 3.699 8 O -0.413 6.413 9 N -0.379 5.379 10 C -0.005 4.005 11 C -0.166 4.166 12 C -0.071 4.071 13 N -0.243 5.243 14 C -0.128 4.128 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.185 4.185 28 C -0.017 4.017 29 O -0.301 6.301 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.236 0.764 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.032 0.968 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.067 0.933 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.816 -16.545 2.529 29.109 hybrid contribution 1.042 0.849 0.789 1.559 sum -22.774 -15.696 3.319 27.857 Atomic orbital electron populations 1.21737 0.93235 1.02472 1.02500 1.22379 0.95012 0.96864 0.84089 0.89847 1.22008 0.92659 1.01907 0.99986 1.21449 0.97838 0.93748 1.00429 0.87975 1.20623 0.82211 0.91375 0.75711 1.90669 1.57508 1.44039 1.49123 1.46058 1.06984 1.09594 1.75248 1.21355 0.93699 0.82940 1.02456 1.21784 0.92574 0.98443 1.03754 1.21997 0.88514 0.95817 1.00792 1.61552 1.03942 1.20123 1.38635 1.22589 1.03767 0.97791 0.88666 1.21872 0.95854 0.89733 1.01091 1.19732 0.87508 0.85299 0.84540 1.90474 1.72553 1.26741 1.56524 1.41859 1.09006 1.07318 1.61875 1.19649 0.83458 0.94946 1.44909 0.87970 1.25259 1.00593 0.94628 0.97427 1.69605 1.37210 0.97796 1.49703 0.85914 0.81985 0.77153 0.79140 1.19894 1.20987 1.19947 1.22215 1.01524 1.00845 0.93957 1.22540 0.81581 0.99581 0.98043 1.87910 1.20432 1.78200 1.43538 0.92169 0.91074 0.91929 0.90485 0.90121 0.76429 0.91488 0.91261 0.90160 0.91091 0.94919 0.90592 0.96766 0.92185 0.88542 0.93463 0.89378 0.77487 0.91825 0.90238 0.89667 0.93266 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.56 37.16 0.36 -0.71 16 2 C 0.07 0.67 2.97 -26.68 -0.08 0.60 16 3 H 0.08 0.95 5.82 -51.93 -0.30 0.65 16 4 C -0.13 -0.95 4.56 -26.59 -0.12 -1.07 16 5 C -0.11 -0.75 3.04 -91.59 -0.28 -1.03 16 6 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 7 C 0.51 4.71 5.82 -10.98 -0.06 4.65 16 8 O -0.54 -6.82 13.85 5.56 0.08 -6.74 16 9 N -0.73 -5.55 5.43 -60.29 -0.33 -5.88 16 10 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 11 C -0.13 -1.20 5.26 -26.73 -0.14 -1.34 16 12 C 0.06 0.68 4.96 -3.82 -0.02 0.66 16 13 N -0.52 -8.30 4.50 -244.37 -1.10 -9.40 16 14 C 0.02 0.31 9.01 60.07 0.54 0.85 16 15 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 16 C 0.44 10.36 7.51 -10.98 -0.08 10.28 16 17 O -0.58 -15.35 13.89 5.54 0.08 -15.27 16 18 N -0.56 -14.21 5.29 -10.96 -0.06 -14.26 16 19 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 23 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.15 -0.83 5.56 -26.59 -0.15 -0.98 16 28 C 0.06 0.46 6.62 37.20 0.25 0.71 16 29 O -0.38 -3.78 10.41 -35.23 -0.37 -4.14 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.62 8.02 -51.93 -0.42 0.21 16 35 H 0.40 2.13 7.86 -40.82 -0.32 1.81 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.65 6.47 -51.93 -0.34 0.31 16 40 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 41 H 0.08 0.86 7.93 -51.93 -0.41 0.44 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.06 0.78 6.30 -51.93 -0.33 0.45 16 44 H 0.10 1.86 5.88 -51.93 -0.31 1.55 16 45 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 46 H 0.09 1.41 7.93 -51.93 -0.41 0.99 16 47 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.08 0.32 7.50 -51.93 -0.39 -0.06 16 50 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.05 0.44 7.38 -51.92 -0.38 0.06 16 52 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 408.73 15.07 6.16 6.16 Total: -1.00 -33.19 408.73 -8.85 -42.04 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.93 Total: 8.81 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.08 Total: 6.49 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.76 Total: -53.24 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.21 Total: -26.16 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.19 -8.85 -42.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265944860.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.625 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds