Wall clock time and date at job start Wed Apr 1 2020 00:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46998 * 2 1 4 4 O 1.42909 * 109.46835 * 180.02562 * 3 2 1 5 5 C 1.42897 * 113.99708 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47141 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99890 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00379 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00130 * 359.97438 * 8 6 5 10 10 C 1.46499 * 120.00024 * 180.02562 * 8 6 5 11 11 C 1.53118 * 109.52490 * 120.00048 * 10 8 6 12 12 C 1.53036 * 109.28068 * 177.61960 * 11 10 8 13 13 N 1.46843 * 109.52229 * 300.82162 * 12 11 10 14 14 C 1.46902 * 110.99818 * 185.83572 * 13 12 11 15 15 C 1.50702 * 109.47027 * 169.99758 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00042 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 89.99599 * 22 20 18 24 24 H 1.48494 * 109.47201 * 209.99761 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99936 * 22 20 18 26 26 C 1.46843 * 111.20082 * 61.74351 * 13 12 11 27 27 C 1.53038 * 109.52070 * 298.25410 * 26 13 12 28 28 H 1.09000 * 109.46694 * 60.00178 * 1 2 3 29 29 H 1.08999 * 109.47308 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46900 * 300.00413 * 1 2 3 31 31 H 1.09003 * 109.46900 * 239.99587 * 2 1 3 32 32 H 1.09000 * 109.46694 * 119.99822 * 2 1 3 33 33 H 1.08994 * 109.47700 * 60.00252 * 3 2 1 34 34 H 1.09000 * 109.47253 * 299.99480 * 3 2 1 35 35 H 1.09002 * 109.47597 * 60.00194 * 5 4 3 36 36 H 1.09002 * 109.47835 * 299.99961 * 5 4 3 37 37 H 1.08998 * 109.46821 * 270.00537 * 9 8 6 38 38 H 1.09004 * 109.46846 * 30.00177 * 9 8 6 39 39 H 1.09000 * 109.47182 * 149.99869 * 9 8 6 40 40 H 1.08996 * 109.52259 * 359.87125 * 10 8 6 41 41 H 1.08995 * 109.50555 * 57.67842 * 11 10 8 42 42 H 1.08995 * 109.50409 * 297.56383 * 11 10 8 43 43 H 1.08996 * 109.46465 * 180.80442 * 12 11 10 44 44 H 1.09004 * 109.45131 * 60.83038 * 12 11 10 45 45 H 1.09004 * 109.47131 * 50.00001 * 14 13 12 46 46 H 1.08994 * 109.47471 * 289.99751 * 14 13 12 47 47 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 48 48 H 0.97005 * 120.00014 * 180.02562 * 21 20 18 49 49 H 1.08997 * 109.46379 * 58.26863 * 26 13 12 50 50 H 1.09000 * 109.46577 * 178.24622 * 26 13 12 51 51 H 1.09001 * 109.50668 * 299.24264 * 27 26 13 52 52 H 1.08995 * 109.50406 * 179.11983 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 6 5.5526 2.6289 -0.0012 7 8 6.0742 1.5340 -0.0012 8 7 6.3165 3.7392 -0.0012 9 6 5.6866 5.0619 -0.0018 10 6 7.7770 3.6235 -0.0018 11 6 8.3437 4.3026 -1.2516 12 6 9.8719 4.2306 -1.2168 13 7 10.3674 4.8996 -0.0072 14 6 11.8346 4.9714 -0.0088 15 6 12.2948 5.8701 1.1100 16 8 11.4806 6.3984 1.8375 17 7 13.6113 6.0820 1.3060 18 6 14.0302 6.8951 2.3273 19 1 13.3052 7.3654 2.9751 20 6 15.3874 7.1140 2.5291 21 7 15.7888 7.8929 3.5084 22 14 16.6413 6.3010 1.4083 23 1 16.9229 7.1905 0.2530 24 1 17.8965 6.0583 2.1637 25 1 16.1012 5.0078 0.9171 26 6 9.8745 4.2358 1.2064 27 6 8.3463 4.3081 1.2440 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.7291 3.2891 0.8887 36 1 3.7283 3.2886 -0.8912 37 1 5.5307 5.3895 -1.0297 38 1 4.7266 5.0073 0.5117 39 1 6.3336 5.7728 0.5120 40 1 8.0589 2.5706 0.0002 41 1 8.0290 5.3460 -1.2732 42 1 7.9754 3.7925 -2.1416 43 1 10.2790 4.7259 -2.0983 44 1 10.1860 3.1868 -1.2091 45 1 12.1776 5.3734 -0.9622 46 1 12.2475 3.9729 0.1341 47 1 14.2625 5.6594 0.7244 48 1 16.7363 8.0460 3.6490 49 1 10.1887 3.1921 1.2026 50 1 10.2833 4.7349 2.0850 51 1 8.0316 5.3515 1.2617 52 1 7.9799 3.8017 2.1370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266177390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:51 Heat of formation + Delta-G solvation = -132.687342 kcal Electronic energy + Delta-G solvation = -29936.047753 eV Core-core repulsion = 25741.905828 eV Total energy + Delta-G solvation = -4194.141925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44430 -40.56137 -39.36285 -38.57868 -36.74201 -35.90166 -34.61661 -33.79247 -33.39856 -31.84286 -29.80501 -28.63341 -27.78445 -26.65673 -25.93839 -24.23051 -23.75751 -22.48776 -21.25824 -20.92796 -20.19518 -20.18594 -18.43990 -17.83568 -17.60023 -17.52984 -17.03511 -16.85903 -16.45782 -16.43082 -16.22577 -15.58537 -15.43672 -15.12519 -15.07640 -14.94373 -14.52767 -14.33943 -14.29545 -14.05010 -13.94591 -13.80310 -13.30252 -13.21977 -13.05999 -12.98042 -12.92968 -12.87891 -12.73588 -12.41034 -12.31344 -12.16624 -11.98052 -11.83632 -11.80225 -11.70805 -11.56323 -11.41380 -10.81395 -10.68589 -10.32975 -10.21340 -9.68974 -9.22233 -8.39873 -6.00123 1.31033 1.36072 1.44721 1.49487 1.65638 1.98156 2.23837 2.61415 2.82503 3.15319 3.22799 3.49008 3.78154 3.83836 3.99713 4.02613 4.05964 4.12777 4.15970 4.22543 4.23940 4.30538 4.35079 4.41140 4.42193 4.47616 4.51934 4.56237 4.62461 4.64298 4.68532 4.71985 4.84294 4.90069 4.94697 4.96009 5.07402 5.12952 5.16129 5.22695 5.30593 5.34402 5.47479 5.54786 5.90886 6.02321 6.07997 6.20745 6.36535 6.61849 6.90589 7.09089 7.42275 7.99487 8.77760 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034849 B = 0.001682 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.269638 B =16643.057476 C =16795.409364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.056 3.944 4 O -0.404 6.404 5 C 0.050 3.950 6 C 0.506 3.494 7 O -0.579 6.579 8 N -0.604 5.604 9 C 0.063 3.937 10 C 0.144 3.856 11 C -0.111 4.111 12 C 0.057 3.943 13 N -0.530 5.530 14 C 0.053 3.947 15 C 0.452 3.548 16 O -0.603 6.603 17 N -0.593 5.593 18 C -0.326 4.326 19 H 0.056 0.944 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.963 3.037 23 H -0.256 1.256 24 H -0.277 1.277 25 H -0.233 1.233 26 C 0.057 3.943 27 C -0.108 4.108 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.038 0.962 45 H 0.125 0.875 46 H 0.073 0.927 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.028 0.972 50 H 0.066 0.934 51 H 0.076 0.924 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.643 -11.516 -15.011 32.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.020 4.020 4 O -0.323 6.323 5 C -0.029 4.029 6 C 0.295 3.705 7 O -0.458 6.458 8 N -0.337 5.337 9 C -0.078 4.078 10 C 0.040 3.960 11 C -0.149 4.149 12 C -0.070 4.070 13 N -0.256 5.256 14 C -0.078 4.078 15 C 0.240 3.760 16 O -0.487 6.487 17 N -0.235 5.235 18 C -0.455 4.455 19 H 0.074 0.926 20 C -0.213 4.213 21 N -0.576 5.576 22 Si 0.783 3.217 23 H -0.180 1.180 24 H -0.202 1.202 25 H -0.157 1.157 26 C -0.071 4.071 27 C -0.147 4.147 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.057 0.943 45 H 0.143 0.857 46 H 0.091 0.909 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.046 0.954 50 H 0.084 0.916 51 H 0.095 0.905 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.874 -11.323 -14.411 32.529 hybrid contribution 1.493 -0.631 0.302 1.649 sum -25.382 -11.955 -14.109 31.404 Atomic orbital electron populations 1.21667 0.92867 1.02844 1.02769 1.21491 0.97112 0.95362 1.02506 1.22827 0.78736 0.98630 1.01793 1.87971 1.21656 1.26919 1.95777 1.22360 0.88866 0.86576 1.05070 1.20995 0.90307 0.83692 0.75544 1.90695 1.75659 1.28395 1.51065 1.47929 1.05987 1.07165 1.72624 1.22165 0.99402 0.82360 1.03896 1.21043 0.79021 1.00290 0.95647 1.21824 0.94276 1.02080 0.96743 1.22179 0.95242 0.97111 0.92486 1.61505 1.07443 1.53921 1.02701 1.21829 0.89212 0.98403 0.98355 1.20862 0.81895 0.85336 0.87892 1.90509 1.53627 1.54092 1.50425 1.42052 1.06702 1.44869 1.29922 1.18999 0.92865 1.24763 1.08874 0.92560 1.26068 0.99119 0.97375 0.98688 1.69804 1.17170 1.38392 1.32256 0.85390 0.77752 0.79995 0.78540 1.18034 1.20199 1.15672 1.22058 0.95483 0.95605 0.93961 1.21757 0.93964 1.01661 0.97333 0.91601 0.91664 0.91791 0.92084 0.92327 0.91650 0.91339 0.87622 0.87131 0.90105 0.88573 0.90471 0.90754 0.89902 0.89974 0.88166 0.94347 0.85694 0.90936 0.77594 0.91227 0.95351 0.91608 0.90526 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.13 -1.60 6.30 30.59 0.19 -1.40 16 3 C 0.06 0.68 5.94 71.98 0.43 1.11 16 4 O -0.40 -8.33 9.88 -129.94 -1.28 -9.62 16 5 C 0.05 0.74 4.97 71.24 0.35 1.09 16 6 C 0.51 11.71 7.75 87.66 0.68 12.39 16 7 O -0.58 -19.68 15.83 15.99 0.25 -19.42 16 8 N -0.60 -11.53 2.77 -822.13 -2.28 -13.80 16 9 C 0.06 0.68 9.26 127.77 1.18 1.86 16 10 C 0.14 3.32 2.59 45.07 0.12 3.43 16 11 C -0.11 -2.14 5.41 30.65 0.17 -1.97 16 12 C 0.06 1.23 5.46 86.33 0.47 1.70 16 13 N -0.53 -15.73 4.40 -900.95 -3.96 -19.69 16 14 C 0.05 1.63 5.45 85.56 0.47 2.10 16 15 C 0.45 20.26 7.46 87.66 0.65 20.91 16 16 O -0.60 -32.70 13.90 -3.07 -0.04 -32.75 16 17 N -0.59 -27.90 5.09 -306.98 -1.56 -29.47 16 18 C -0.33 -19.04 10.16 84.04 0.85 -18.19 16 19 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 20 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 21 N -0.94 -56.48 13.96 21.66 0.30 -56.17 16 22 Si 0.96 38.89 27.74 68.60 1.90 40.79 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 26 C 0.06 1.83 5.10 86.33 0.44 2.27 16 27 C -0.11 -2.89 5.40 30.65 0.17 -2.72 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.11 0.97 7.40 -2.39 -0.02 0.95 16 36 H 0.11 0.90 8.11 -2.39 -0.02 0.88 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.10 0.52 6.44 -2.39 -0.02 0.51 16 39 H 0.08 0.99 6.38 -2.39 -0.02 0.97 16 40 H 0.07 2.11 6.90 -2.39 -0.02 2.09 16 41 H 0.08 1.53 7.60 -2.39 -0.02 1.51 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.74 8.01 -2.39 -0.02 1.72 16 44 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.13 3.04 7.99 -2.38 -0.02 3.02 16 46 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 47 H 0.39 15.17 5.76 -92.71 -0.53 14.63 16 48 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 49 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.07 2.68 5.78 -2.39 -0.01 2.66 16 51 H 0.08 2.05 6.58 -2.39 -0.02 2.04 16 52 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -85.43 409.43 1.00 -84.44 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.31 Total: 33.79 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 7.35 Total: 21.90 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -7.50 Total: -119.13 kcal Atomic # 8 Polarization: -60.71 SS G_CDS: -1.07 Total: -61.79 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.90 Total: 40.79 kcal Total: -85.43 1.00 -84.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266177390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.250 kcal (2) G-P(sol) polarization free energy of solvation -85.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds