Wall clock time and date at job start Wed Apr 1 2020 00:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47106 * 2 1 4 4 O 1.42897 * 109.47358 * 180.02562 * 3 2 1 5 5 C 1.42901 * 114.00284 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47074 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99894 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00040 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46716 * 34.99668 * 9 8 6 11 11 C 1.52999 * 109.46926 * 274.99562 * 9 8 6 12 12 C 1.53004 * 109.47154 * 300.00049 * 11 9 8 13 13 C 1.52998 * 109.47118 * 300.00248 * 12 11 9 14 14 C 1.52999 * 109.47311 * 59.99848 * 13 12 11 15 15 H 1.08999 * 109.47146 * 59.99962 * 14 13 12 16 16 N 1.46903 * 109.47145 * 180.02562 * 14 13 12 17 17 C 1.46893 * 110.99924 * 274.99722 * 16 14 13 18 18 C 1.50706 * 109.47176 * 179.97438 * 17 16 14 19 19 O 1.21295 * 119.99584 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00020 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99737 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00254 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99943 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00099 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00243 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47026 * 90.00208 * 25 23 21 27 27 H 1.48496 * 109.47474 * 210.00244 * 25 23 21 28 28 H 1.48504 * 109.47117 * 330.00775 * 25 23 21 29 29 C 1.52998 * 109.46979 * 154.99538 * 9 8 6 30 30 H 1.09003 * 109.47168 * 59.99716 * 1 2 3 31 31 H 1.09004 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47436 * 300.00110 * 1 2 3 33 33 H 1.08998 * 109.47020 * 240.00119 * 2 1 3 34 34 H 1.08997 * 109.47512 * 120.00014 * 2 1 3 35 35 H 1.09003 * 109.47063 * 59.99662 * 3 2 1 36 36 H 1.09003 * 109.47338 * 300.00180 * 3 2 1 37 37 H 1.09000 * 109.46732 * 60.00003 * 5 4 3 38 38 H 1.08996 * 109.47178 * 299.99965 * 5 4 3 39 39 H 0.97007 * 119.99626 * 359.97438 * 8 6 5 40 40 H 1.08999 * 109.47146 * 180.02562 * 11 9 8 41 41 H 1.09004 * 109.47054 * 60.00009 * 11 9 8 42 42 H 1.08994 * 109.47142 * 179.97438 * 12 11 9 43 43 H 1.08999 * 109.46957 * 60.00052 * 12 11 9 44 44 H 1.09008 * 109.46858 * 299.99803 * 13 12 11 45 45 H 1.08996 * 109.47332 * 179.97438 * 13 12 11 46 46 H 1.00904 * 110.99923 * 151.04804 * 16 14 13 47 47 H 1.09001 * 109.46739 * 60.00281 * 17 16 14 48 48 H 1.09000 * 109.47767 * 300.00540 * 17 16 14 49 49 H 0.96994 * 119.99756 * 0.02562 * 20 18 17 50 50 H 0.96999 * 120.00288 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.47230 * 299.99516 * 29 9 8 52 52 H 1.08999 * 109.47046 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5525 2.6290 -0.0025 7 8 6.0740 1.5341 -0.0023 8 7 6.3164 3.7394 -0.0027 9 6 7.7769 3.6237 -0.0033 10 1 8.0723 2.7558 -0.5929 11 6 8.2759 3.4581 1.4335 12 6 7.8611 4.6763 2.2610 13 6 8.4725 5.9393 1.6511 14 6 7.9734 6.1049 0.2143 15 1 6.8868 6.1909 0.2148 16 7 8.5609 7.3173 -0.3714 17 6 7.7691 8.5055 -0.0264 18 6 8.4013 9.7268 -0.6429 19 8 9.4118 9.6178 -1.3049 20 7 7.8439 10.9399 -0.4585 21 6 8.4187 12.0508 -1.0197 22 1 9.3180 11.9538 -1.6099 23 6 7.8438 13.3015 -0.8301 24 7 6.7493 13.4195 -0.1124 25 14 8.6274 14.8153 -1.5942 26 1 8.0610 15.0353 -2.9492 27 1 8.3491 15.9998 -0.7430 28 1 10.0951 14.6140 -1.6980 29 6 8.3882 4.8867 -0.6132 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.7289 3.2891 0.8887 38 1 3.7282 3.2886 -0.8912 39 1 5.8992 4.6151 -0.0025 40 1 9.3625 3.3725 1.4331 41 1 7.8403 2.5583 1.8679 42 1 8.2163 4.5581 3.2847 43 1 6.7745 4.7623 2.2615 44 1 9.5591 5.8532 1.6507 45 1 8.1766 6.8072 2.2404 46 1 8.6577 7.2252 -1.3716 47 1 7.7392 8.6200 1.0572 48 1 6.7546 8.3894 -0.4076 49 1 7.0361 11.0270 0.0713 50 1 6.3481 14.2927 0.0203 51 1 8.0327 5.0046 -1.6369 52 1 9.4748 4.8008 -0.6133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267079857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:36 Heat of formation + Delta-G solvation = -138.692765 kcal Electronic energy + Delta-G solvation = -29591.168246 eV Core-core repulsion = 25396.765907 eV Total energy + Delta-G solvation = -4194.402339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.56436 -39.01855 -38.22043 -37.68659 -35.10350 -34.08860 -33.92645 -33.30732 -31.26798 -30.65348 -29.61001 -28.21075 -26.21096 -25.94810 -24.05316 -22.75230 -22.05530 -21.70126 -21.25958 -19.39358 -19.14130 -17.92740 -17.63501 -17.08162 -16.93009 -16.41469 -15.70579 -15.58064 -15.29533 -15.24151 -15.06185 -14.57377 -14.46985 -14.40390 -13.87762 -13.80811 -13.72897 -13.45110 -12.88048 -12.59604 -12.55573 -12.46368 -12.34667 -12.30664 -12.26916 -12.06381 -11.81735 -11.54112 -11.36660 -11.33585 -11.31851 -11.06764 -10.79266 -10.56922 -10.41607 -10.28936 -10.21834 -10.11435 -10.01030 -9.53615 -9.28864 -8.48211 -8.11455 -7.98838 -6.44568 -3.85394 2.35538 2.48182 3.15748 3.24706 3.30730 3.57115 3.87451 4.00012 4.22429 4.38021 4.49913 4.51841 4.57971 4.62374 4.72347 4.78044 4.86279 4.87272 4.94924 5.02061 5.03123 5.03937 5.14247 5.21718 5.24481 5.27578 5.33896 5.41957 5.51557 5.55688 5.65378 5.68348 5.71972 5.77342 5.83118 5.87610 5.91200 5.99920 6.08313 6.16805 6.19855 6.25823 6.37953 6.64158 7.20119 7.21386 7.52605 7.62476 7.96335 8.03581 8.58334 9.15225 9.51350 10.02791 10.73131 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.001838 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.685066 B =15231.637906 C =16753.714377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.364 6.364 5 C 0.043 3.957 6 C 0.515 3.485 7 O -0.520 6.520 8 N -0.722 5.722 9 C 0.153 3.847 10 H 0.090 0.910 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.110 4.110 14 C 0.089 3.911 15 H 0.036 0.964 16 N -0.664 5.664 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C -0.129 4.129 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.400 0.600 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.350 0.650 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.070 0.930 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.752 -22.498 3.744 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.283 6.283 5 C -0.037 4.037 6 C 0.300 3.700 7 O -0.395 6.395 8 N -0.377 5.377 9 C 0.048 3.952 10 H 0.108 0.892 11 C -0.169 4.169 12 C -0.155 4.155 13 C -0.148 4.148 14 C -0.021 4.021 15 H 0.054 0.946 16 N -0.296 5.296 17 C -0.081 4.081 18 C 0.225 3.775 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.168 4.168 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.235 0.765 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.170 0.830 47 H 0.103 0.897 48 H 0.060 0.940 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.088 0.912 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.238 -23.272 3.840 25.331 hybrid contribution -1.435 1.628 -0.516 2.231 sum -10.673 -21.644 3.324 24.361 Atomic orbital electron populations 1.21701 0.94601 1.02363 1.02063 1.21447 0.95655 0.95346 1.03656 1.22655 0.80378 0.98364 1.00366 1.87999 1.19655 1.25162 1.95456 1.22204 0.91768 0.87046 1.02701 1.20221 0.88579 0.84706 0.76530 1.90728 1.74574 1.26454 1.47731 1.46078 1.07140 1.08628 1.75853 1.20940 0.78517 0.98731 0.97011 0.89150 1.21934 1.01488 0.98576 0.94920 1.21504 1.00493 0.94467 0.98996 1.21583 1.01582 0.96982 0.94658 1.21506 0.95889 0.89506 0.95171 0.94595 1.60088 1.51212 1.00298 1.18042 1.21715 0.94480 0.90695 1.01229 1.19820 0.87198 0.84289 0.86154 1.90528 1.26332 1.85814 1.44007 1.41861 1.26074 1.05374 1.46724 1.19710 1.09972 0.84230 1.29023 0.87911 1.25260 0.96171 0.99243 0.97248 1.69609 1.19750 1.25520 1.39470 0.85855 0.79565 0.80241 0.78619 1.20436 1.20916 1.19382 1.22028 1.02713 0.93079 0.98951 0.92477 0.91919 0.92478 0.90972 0.90977 0.93082 0.93083 0.90230 0.90242 0.76455 0.90660 0.91514 0.91784 0.92378 0.90862 0.91796 0.82992 0.89665 0.94043 0.77504 0.91875 0.91182 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.12 -0.81 6.30 -26.73 -0.17 -0.98 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 O -0.36 -3.80 9.88 -55.14 -0.54 -4.35 16 5 C 0.04 0.34 6.42 36.01 0.23 0.57 16 6 C 0.51 5.45 7.87 -10.98 -0.09 5.36 16 7 O -0.52 -7.79 16.16 -14.35 -0.23 -8.02 16 8 N -0.72 -6.12 4.23 -53.81 -0.23 -6.35 16 9 C 0.15 1.40 2.78 -67.93 -0.19 1.22 16 10 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 11 C -0.13 -1.19 5.60 -26.73 -0.15 -1.34 16 12 C -0.12 -1.03 5.77 -26.73 -0.15 -1.19 16 13 C -0.11 -1.16 5.43 -26.73 -0.15 -1.30 16 14 C 0.09 0.96 2.32 -67.71 -0.16 0.80 16 15 H 0.04 0.35 6.16 -51.93 -0.32 0.03 16 16 N -0.66 -9.85 5.93 -107.99 -0.64 -10.49 16 17 C 0.05 0.85 5.97 -4.98 -0.03 0.83 16 18 C 0.44 10.12 7.82 -10.98 -0.09 10.03 16 19 O -0.58 -15.55 15.78 5.54 0.09 -15.46 16 20 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 21 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 25 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 C -0.13 -1.21 4.88 -26.73 -0.13 -1.34 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.40 2.67 6.87 -40.82 -0.28 2.39 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.49 7.60 -51.93 -0.39 0.10 16 44 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 45 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 46 H 0.35 5.40 8.05 -39.29 -0.32 5.09 16 47 H 0.09 1.33 7.44 -51.93 -0.39 0.94 16 48 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 49 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 50 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 51 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 52 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 418.05 15.07 6.30 6.30 Total: -1.00 -33.90 418.05 -9.40 -43.30 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -9.07 Total: 11.75 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -0.72 Total: 5.04 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.20 Total: -54.37 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.69 Total: -27.82 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.90 -9.40 -43.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267079857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.389 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds