Wall clock time and date at job start Wed Apr 1 2020 00:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47106 * 2 1 4 4 O 1.42897 * 109.47358 * 180.02562 * 3 2 1 5 5 C 1.42901 * 114.00284 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47074 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99894 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00040 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46716 * 34.99668 * 9 8 6 11 11 C 1.52999 * 109.46926 * 274.99562 * 9 8 6 12 12 C 1.53004 * 109.47154 * 300.00049 * 11 9 8 13 13 C 1.52998 * 109.47118 * 300.00248 * 12 11 9 14 14 C 1.52999 * 109.47311 * 59.99848 * 13 12 11 15 15 H 1.08999 * 109.47146 * 59.99962 * 14 13 12 16 16 N 1.46903 * 109.47145 * 180.02562 * 14 13 12 17 17 C 1.46893 * 110.99924 * 274.99722 * 16 14 13 18 18 C 1.50706 * 109.47176 * 179.97438 * 17 16 14 19 19 O 1.21295 * 119.99584 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00020 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99737 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00254 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99943 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00099 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00243 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47026 * 90.00208 * 25 23 21 27 27 H 1.48496 * 109.47474 * 210.00244 * 25 23 21 28 28 H 1.48504 * 109.47117 * 330.00775 * 25 23 21 29 29 C 1.52998 * 109.46979 * 154.99538 * 9 8 6 30 30 H 1.09003 * 109.47168 * 59.99716 * 1 2 3 31 31 H 1.09004 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47436 * 300.00110 * 1 2 3 33 33 H 1.08998 * 109.47020 * 240.00119 * 2 1 3 34 34 H 1.08997 * 109.47512 * 120.00014 * 2 1 3 35 35 H 1.09003 * 109.47063 * 59.99662 * 3 2 1 36 36 H 1.09003 * 109.47338 * 300.00180 * 3 2 1 37 37 H 1.09000 * 109.46732 * 60.00003 * 5 4 3 38 38 H 1.08996 * 109.47178 * 299.99965 * 5 4 3 39 39 H 0.97007 * 119.99626 * 359.97438 * 8 6 5 40 40 H 1.08999 * 109.47146 * 180.02562 * 11 9 8 41 41 H 1.09004 * 109.47054 * 60.00009 * 11 9 8 42 42 H 1.08994 * 109.47142 * 179.97438 * 12 11 9 43 43 H 1.08999 * 109.46957 * 60.00052 * 12 11 9 44 44 H 1.09008 * 109.46858 * 299.99803 * 13 12 11 45 45 H 1.08996 * 109.47332 * 179.97438 * 13 12 11 46 46 H 1.00904 * 110.99923 * 151.04804 * 16 14 13 47 47 H 1.09001 * 109.46739 * 60.00281 * 17 16 14 48 48 H 1.09000 * 109.47767 * 300.00540 * 17 16 14 49 49 H 0.96994 * 119.99756 * 0.02562 * 20 18 17 50 50 H 0.96999 * 120.00288 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.47230 * 299.99516 * 29 9 8 52 52 H 1.08999 * 109.47046 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5525 2.6290 -0.0025 7 8 6.0740 1.5341 -0.0023 8 7 6.3164 3.7394 -0.0027 9 6 7.7769 3.6237 -0.0033 10 1 8.0723 2.7558 -0.5929 11 6 8.2759 3.4581 1.4335 12 6 7.8611 4.6763 2.2610 13 6 8.4725 5.9393 1.6511 14 6 7.9734 6.1049 0.2143 15 1 6.8868 6.1909 0.2148 16 7 8.5609 7.3173 -0.3714 17 6 7.7691 8.5055 -0.0264 18 6 8.4013 9.7268 -0.6429 19 8 9.4118 9.6178 -1.3049 20 7 7.8439 10.9399 -0.4585 21 6 8.4187 12.0508 -1.0197 22 1 9.3180 11.9538 -1.6099 23 6 7.8438 13.3015 -0.8301 24 7 6.7493 13.4195 -0.1124 25 14 8.6274 14.8153 -1.5942 26 1 8.0610 15.0353 -2.9492 27 1 8.3491 15.9998 -0.7430 28 1 10.0951 14.6140 -1.6980 29 6 8.3882 4.8867 -0.6132 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.7289 3.2891 0.8887 38 1 3.7282 3.2886 -0.8912 39 1 5.8992 4.6151 -0.0025 40 1 9.3625 3.3725 1.4331 41 1 7.8403 2.5583 1.8679 42 1 8.2163 4.5581 3.2847 43 1 6.7745 4.7623 2.2615 44 1 9.5591 5.8532 1.6507 45 1 8.1766 6.8072 2.2404 46 1 8.6577 7.2252 -1.3716 47 1 7.7392 8.6200 1.0572 48 1 6.7546 8.3894 -0.4076 49 1 7.0361 11.0270 0.0713 50 1 6.3481 14.2927 0.0203 51 1 8.0327 5.0046 -1.6369 52 1 9.4748 4.8008 -0.6133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267079857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:35 Heat of formation + Delta-G solvation = -163.060629 kcal Electronic energy + Delta-G solvation = -29592.224916 eV Core-core repulsion = 25396.765907 eV Total energy + Delta-G solvation = -4195.459009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38259 -40.21708 -39.52692 -38.52771 -36.33367 -35.72413 -34.59531 -34.22497 -33.24714 -31.46901 -30.63389 -28.84173 -27.77107 -26.47606 -25.69199 -23.54937 -22.68064 -22.47821 -22.03257 -21.05371 -20.08648 -19.87457 -18.38656 -17.89782 -17.72666 -17.49749 -16.89315 -16.50238 -16.41234 -16.29804 -16.08341 -15.97454 -15.58747 -15.30115 -15.20894 -14.95993 -14.59548 -14.36345 -14.20215 -13.59057 -13.44788 -13.27800 -13.20564 -13.17786 -13.05242 -12.99936 -12.97591 -12.87411 -12.84193 -12.40807 -12.22027 -12.12210 -11.83928 -11.79419 -11.60999 -11.50075 -11.39831 -11.11380 -10.85660 -10.68533 -10.31345 -10.07943 -9.99993 -9.28435 -8.45905 -5.94258 1.38581 1.42802 1.55124 1.57248 1.81922 2.07382 2.29860 2.89312 2.98332 3.21809 3.47533 3.69734 3.74117 3.82934 4.02979 4.03271 4.11076 4.17902 4.24129 4.24539 4.28129 4.33852 4.41537 4.42440 4.51191 4.52561 4.57042 4.62260 4.64109 4.64197 4.70845 4.84652 4.90687 5.06381 5.10471 5.15770 5.18147 5.22742 5.31543 5.33641 5.34983 5.41737 5.43514 5.56600 5.93669 6.08813 6.16323 6.45814 6.53458 6.61763 7.14180 7.21968 7.58265 8.13861 8.71344 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.001838 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.685066 B =15231.637906 C =16753.714377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.055 3.945 4 O -0.400 6.400 5 C 0.042 3.958 6 C 0.512 3.488 7 O -0.572 6.572 8 N -0.709 5.709 9 C 0.157 3.843 10 H 0.077 0.923 11 C -0.127 4.127 12 C -0.107 4.107 13 C -0.107 4.107 14 C 0.093 3.907 15 H 0.057 0.943 16 N -0.679 5.679 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.274 1.274 29 C -0.120 4.120 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.412 0.588 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.345 0.655 47 H 0.101 0.899 48 H 0.070 0.930 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.075 0.925 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.437 -21.993 4.183 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.021 4.021 4 O -0.319 6.319 5 C -0.037 4.037 6 C 0.298 3.702 7 O -0.451 6.451 8 N -0.363 5.363 9 C 0.052 3.948 10 H 0.095 0.905 11 C -0.165 4.165 12 C -0.145 4.145 13 C -0.145 4.145 14 C -0.017 4.017 15 H 0.075 0.925 16 N -0.312 5.312 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.199 1.199 29 C -0.158 4.158 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.250 0.750 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.165 0.835 47 H 0.119 0.881 48 H 0.088 0.912 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.093 0.907 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.959 -22.746 4.300 25.613 hybrid contribution -0.884 1.419 -0.646 1.792 sum -11.843 -21.327 3.654 24.667 Atomic orbital electron populations 1.21674 0.93045 1.02854 1.02684 1.21476 0.96976 0.95267 1.02606 1.22820 0.78937 0.98667 1.01649 1.87959 1.21436 1.26770 1.95777 1.22354 0.89533 0.86696 1.05109 1.20785 0.89895 0.84149 0.75330 1.90707 1.75661 1.28390 1.50301 1.45965 1.06723 1.08871 1.74782 1.20817 0.79039 0.98035 0.96877 0.90522 1.21883 1.01668 0.98226 0.94730 1.21428 1.00905 0.93198 0.98996 1.21550 1.00938 0.97543 0.94511 1.21572 0.96909 0.88120 0.95060 0.92485 1.60076 1.51990 1.01132 1.17966 1.21568 0.95189 0.88255 1.01514 1.20961 0.86387 0.85417 0.84808 1.90498 1.28253 1.86658 1.45649 1.41925 1.26403 1.05609 1.47118 1.19659 1.10195 0.86035 1.30507 0.90420 1.25998 0.96505 1.01339 0.97309 1.69662 1.20232 1.26477 1.39660 0.84953 0.78292 0.77039 0.78213 1.19626 1.19600 1.19923 1.21921 1.02496 0.92371 0.98998 0.91865 0.91561 0.91779 0.92104 0.92012 0.91636 0.91786 0.87527 0.87765 0.75015 0.90353 0.92721 0.91227 0.91420 0.92126 0.92298 0.83503 0.88073 0.91203 0.76945 0.91323 0.90655 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.45 16 2 C -0.13 -1.58 6.30 30.59 0.19 -1.38 16 3 C 0.06 0.69 5.94 71.98 0.43 1.12 16 4 O -0.40 -7.94 9.88 -129.94 -1.28 -9.22 16 5 C 0.04 0.58 6.42 71.24 0.46 1.04 16 6 C 0.51 10.20 7.87 87.66 0.69 10.89 16 7 O -0.57 -17.26 16.16 16.02 0.26 -17.00 16 8 N -0.71 -10.60 4.23 -442.54 -1.87 -12.47 16 9 C 0.16 2.71 2.78 44.99 0.13 2.83 16 10 H 0.08 1.59 7.58 -2.39 -0.02 1.57 16 11 C -0.13 -2.17 5.60 30.59 0.17 -1.99 16 12 C -0.11 -1.68 5.77 30.59 0.18 -1.50 16 13 C -0.11 -2.05 5.43 30.59 0.17 -1.89 16 14 C 0.09 1.77 2.32 44.92 0.10 1.88 16 15 H 0.06 0.89 6.16 -2.39 -0.01 0.87 16 16 N -0.68 -19.06 5.93 -495.57 -2.94 -22.00 16 17 C 0.07 2.09 5.97 85.56 0.51 2.60 16 18 C 0.44 19.99 7.82 87.66 0.69 20.67 16 19 O -0.62 -33.79 15.78 -3.08 -0.05 -33.84 16 20 N -0.57 -28.55 5.29 -306.98 -1.62 -30.17 16 21 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 22 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 24 N -0.92 -48.56 13.05 21.66 0.28 -48.28 16 25 Si 0.99 42.30 29.55 68.60 2.03 44.33 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 29 C -0.12 -2.04 4.88 30.59 0.15 -1.89 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.41 4.17 6.87 -92.70 -0.64 3.54 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 0.95 7.60 -2.39 -0.02 0.93 16 44 H 0.06 1.32 8.14 -2.38 -0.02 1.31 16 45 H 0.06 1.20 7.45 -2.39 -0.02 1.19 16 46 H 0.35 10.28 8.05 -89.69 -0.72 9.56 16 47 H 0.10 2.88 7.44 -2.39 -0.02 2.87 16 48 H 0.07 1.82 8.06 -2.39 -0.02 1.80 16 49 H 0.40 18.62 7.90 -92.71 -0.73 17.88 16 50 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 51 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 52 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -74.92 418.05 -0.51 -75.43 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: -1.16 Total: 39.33 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 5.85 Total: 13.91 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -6.15 Total: -112.93 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -1.07 Total: -60.07 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -74.92 -0.51 -75.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267079857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.635 kcal (2) G-P(sol) polarization free energy of solvation -74.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds