Wall clock time and date at job start Wed Apr 1 2020 00:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47245 * 2 1 4 4 O 1.42901 * 109.47343 * 180.02562 * 3 2 1 5 5 C 1.42892 * 114.00524 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47632 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99684 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00155 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99955 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47175 * 325.00036 * 9 8 6 11 11 C 1.52997 * 109.47204 * 85.00142 * 9 8 6 12 12 C 1.52999 * 109.47592 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46626 * 300.00035 * 12 11 9 14 14 C 1.52997 * 109.47164 * 59.99702 * 13 12 11 15 15 H 1.09000 * 109.47140 * 60.00051 * 14 13 12 16 16 N 1.46896 * 109.47244 * 179.97438 * 14 13 12 17 17 C 1.46902 * 111.00514 * 275.00402 * 16 14 13 18 18 C 1.50699 * 109.47464 * 179.97438 * 17 16 14 19 19 O 1.21290 * 120.00117 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00212 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00503 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99537 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00270 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00117 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99974 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47188 * 90.00215 * 25 23 21 27 27 H 1.48502 * 109.46834 * 210.00154 * 25 23 21 28 28 H 1.48502 * 109.46779 * 329.99951 * 25 23 21 29 29 C 1.52996 * 109.46993 * 205.00166 * 9 8 6 30 30 H 1.09005 * 109.47222 * 300.00955 * 1 2 3 31 31 H 1.09002 * 109.46648 * 59.99981 * 1 2 3 32 32 H 1.08995 * 109.47241 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47164 * 239.99470 * 2 1 3 34 34 H 1.09003 * 109.46863 * 119.99512 * 2 1 3 35 35 H 1.08993 * 109.47473 * 59.99659 * 3 2 1 36 36 H 1.09002 * 109.47313 * 299.99611 * 3 2 1 37 37 H 1.09006 * 109.47096 * 59.99342 * 5 4 3 38 38 H 1.08999 * 109.47087 * 299.99939 * 5 4 3 39 39 H 0.97001 * 120.00163 * 0.02562 * 8 6 5 40 40 H 1.09000 * 109.47140 * 59.99873 * 11 9 8 41 41 H 1.09002 * 109.47045 * 299.99966 * 11 9 8 42 42 H 1.08993 * 109.47839 * 180.02562 * 12 11 9 43 43 H 1.09000 * 109.47160 * 59.99666 * 12 11 9 44 44 H 1.09001 * 109.46998 * 179.97438 * 13 12 11 45 45 H 1.09000 * 109.47050 * 299.99699 * 13 12 11 46 46 H 1.00901 * 111.00214 * 151.04358 * 16 14 13 47 47 H 1.09004 * 109.46873 * 299.99682 * 17 16 14 48 48 H 1.08998 * 109.46783 * 59.99220 * 17 16 14 49 49 H 0.97006 * 120.00076 * 359.97438 * 20 18 17 50 50 H 0.97002 * 120.00574 * 179.97438 * 24 23 21 51 51 H 1.08992 * 109.47534 * 60.00265 * 29 9 8 52 52 H 1.08996 * 109.47134 * 299.99460 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0503 2.7478 -0.0012 6 6 5.5526 2.6288 -0.0012 7 8 6.0742 1.5339 -0.0012 8 7 6.3166 3.7391 -0.0023 9 6 7.7770 3.6234 -0.0028 10 1 8.0730 2.7559 0.5871 11 6 8.2749 3.4569 -1.4399 12 6 9.8001 3.3354 -1.4405 13 6 10.4124 4.5985 -0.8317 14 6 9.9145 4.7651 0.6054 15 1 10.2101 3.8974 1.1952 16 7 10.5029 5.9774 1.1901 17 6 11.8326 5.7002 1.7497 18 6 12.4034 6.9645 2.3385 19 8 11.7656 7.9953 2.2957 20 7 13.6231 6.9502 2.9117 21 6 14.1427 8.1005 3.4469 22 1 13.5744 9.0181 3.4095 23 6 15.3999 8.0855 4.0382 24 7 16.0908 6.9686 4.0851 25 14 16.1075 9.6527 4.7681 26 1 15.7109 9.7571 6.1953 27 1 17.5887 9.6210 4.6669 28 1 15.5853 10.8258 4.0221 29 6 8.3889 4.8868 0.6058 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 3.7290 3.2891 0.8887 38 1 3.7284 3.2885 -0.8912 39 1 5.8995 4.6149 -0.0027 40 1 7.9789 4.3244 -2.0298 41 1 7.8390 2.5568 -1.8734 42 1 10.1548 3.2172 -2.4642 43 1 10.0957 2.4677 -0.8507 44 1 11.4990 4.5118 -0.8317 45 1 10.1168 5.4662 -1.4215 46 1 9.8925 6.3752 1.8882 47 1 11.7482 4.9422 2.5285 48 1 12.4908 5.3381 0.9600 49 1 14.1334 6.1259 2.9456 50 1 16.9686 6.9582 4.4976 51 1 8.0343 5.0055 1.6295 52 1 8.0930 5.7542 0.0158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267079858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:38 Heat of formation + Delta-G solvation = -167.217732 kcal Electronic energy + Delta-G solvation = -29011.449474 eV Core-core repulsion = 24815.810200 eV Total energy + Delta-G solvation = -4195.639275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20667 -40.26012 -39.49963 -38.58490 -36.39761 -35.80752 -34.63552 -34.50291 -33.25881 -31.37857 -30.59655 -28.70170 -27.78022 -26.46670 -25.71231 -23.51601 -22.82608 -22.44570 -21.50249 -21.09150 -20.71411 -19.89414 -18.27428 -18.02690 -17.74347 -17.48267 -16.91174 -16.62043 -16.42275 -16.16552 -16.05508 -15.98206 -15.48719 -15.21613 -15.17611 -15.14250 -14.65959 -14.38973 -14.26869 -13.88539 -13.52037 -13.35790 -13.24037 -13.20181 -13.06712 -12.98207 -12.88535 -12.87084 -12.41321 -12.30854 -12.16364 -12.11842 -11.84315 -11.79389 -11.54912 -11.53277 -11.50234 -11.46951 -10.80898 -10.68023 -10.33545 -10.10156 -10.01280 -9.33695 -8.46228 -5.95205 1.38511 1.42352 1.55215 1.56018 1.77606 2.05416 2.29534 2.85057 3.00117 3.21156 3.45306 3.68758 3.77927 3.87880 3.98371 4.03158 4.11045 4.17500 4.23911 4.27365 4.31278 4.32404 4.41635 4.43327 4.46131 4.50090 4.50270 4.57273 4.60610 4.64589 4.65199 4.84328 4.93031 5.08212 5.10191 5.14433 5.16203 5.22737 5.27924 5.31144 5.34929 5.40950 5.42661 5.52923 5.91452 6.09882 6.12264 6.43626 6.56025 6.60201 7.12767 7.23071 7.56456 8.11361 8.71183 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025695 B = 0.001469 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.441111 B =19056.689294 C =19568.879062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.056 3.944 4 O -0.403 6.403 5 C 0.045 3.955 6 C 0.509 3.491 7 O -0.574 6.574 8 N -0.710 5.710 9 C 0.156 3.844 10 H 0.066 0.934 11 C -0.121 4.121 12 C -0.110 4.110 13 C -0.106 4.106 14 C 0.092 3.908 15 H 0.045 0.955 16 N -0.673 5.673 17 C 0.065 3.935 18 C 0.438 3.562 19 O -0.621 6.621 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 C -0.115 4.115 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.418 0.582 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.346 0.654 47 H 0.063 0.937 48 H 0.101 0.899 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.074 0.926 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.537 -11.187 -10.712 31.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.020 4.020 4 O -0.322 6.322 5 C -0.034 4.034 6 C 0.295 3.705 7 O -0.453 6.453 8 N -0.363 5.363 9 C 0.051 3.949 10 H 0.084 0.916 11 C -0.160 4.160 12 C -0.149 4.149 13 C -0.144 4.144 14 C -0.018 4.018 15 H 0.063 0.937 16 N -0.305 5.305 17 C -0.067 4.067 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.154 4.154 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.256 0.744 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.165 0.835 47 H 0.081 0.919 48 H 0.119 0.881 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.092 0.908 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -27.061 -11.266 -11.246 31.396 hybrid contribution 0.549 0.258 1.314 1.448 sum -26.512 -11.008 -9.932 30.376 Atomic orbital electron populations 1.21669 0.92970 1.02823 1.02739 1.21484 0.97040 0.95409 1.02518 1.22813 0.78850 0.98564 1.01743 1.87966 1.21533 1.26948 1.95796 1.22344 0.89069 0.86645 1.05327 1.20907 0.90127 0.84115 0.75310 1.90722 1.75747 1.28578 1.50248 1.45821 1.06379 1.09209 1.74900 1.20776 0.79051 0.98179 0.96926 0.91572 1.21852 0.95983 1.02149 0.96003 1.21440 0.94405 0.97390 1.01647 1.21548 1.00057 0.98131 0.94699 1.21517 0.93564 0.90470 0.96210 0.93728 1.60119 1.02784 1.28467 1.39156 1.21567 0.92844 0.93321 0.98993 1.20842 0.82537 0.91345 0.82673 1.90482 1.61519 1.35441 1.63351 1.41940 1.15851 1.11712 1.51544 1.19686 1.01139 0.90263 1.35366 0.90218 1.26037 0.96065 1.01631 0.97447 1.69674 1.13726 1.27767 1.45013 0.84928 0.77466 0.77468 0.78484 1.19615 1.19596 1.19691 1.21842 0.93747 0.97681 1.02105 0.91794 0.91671 0.91688 0.92110 0.92259 0.91651 0.91473 0.87481 0.87203 0.74428 0.90311 0.92854 0.90425 0.92268 0.92501 0.91275 0.83467 0.91941 0.88126 0.77050 0.91316 0.90775 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.91 71.98 0.71 -0.30 16 2 C -0.13 -1.49 6.30 30.59 0.19 -1.30 16 3 C 0.06 0.63 5.94 71.98 0.43 1.06 16 4 O -0.40 -7.62 9.88 -129.94 -1.28 -8.90 16 5 C 0.05 0.55 6.42 71.24 0.46 1.01 16 6 C 0.51 9.89 7.87 87.66 0.69 10.58 16 7 O -0.57 -17.60 16.16 16.00 0.26 -17.34 16 8 N -0.71 -9.94 5.08 -442.54 -2.25 -12.19 16 9 C 0.16 2.77 2.45 44.99 0.11 2.88 16 10 H 0.07 1.53 7.58 -2.39 -0.02 1.51 16 11 C -0.12 -2.12 5.49 30.59 0.17 -1.95 16 12 C -0.11 -2.00 5.92 30.60 0.18 -1.81 16 13 C -0.11 -2.25 5.43 30.60 0.17 -2.09 16 14 C 0.09 2.07 2.49 44.93 0.11 2.19 16 15 H 0.04 1.02 7.80 -2.39 -0.02 1.01 16 16 N -0.67 -20.27 5.93 -495.50 -2.94 -23.21 16 17 C 0.07 2.23 5.96 85.56 0.51 2.74 16 18 C 0.44 20.82 7.82 87.66 0.69 21.51 16 19 O -0.62 -34.13 15.78 -3.06 -0.05 -34.18 16 20 N -0.57 -29.53 5.29 -307.00 -1.62 -31.15 16 21 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -49.88 13.05 21.66 0.28 -49.60 16 25 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 29 C -0.12 -2.01 4.67 30.61 0.14 -1.86 16 30 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.42 2.92 8.60 -92.71 -0.80 2.12 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.06 1.31 7.45 -2.39 -0.02 1.29 16 45 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.35 10.76 8.05 -89.69 -0.72 10.04 16 47 H 0.06 1.92 8.06 -2.39 -0.02 1.90 16 48 H 0.10 3.18 7.43 -2.39 -0.02 3.17 16 49 H 0.40 19.44 7.90 -92.70 -0.73 18.71 16 50 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 51 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 52 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -76.90 422.48 -1.06 -77.96 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -1.32 Total: 39.49 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 5.84 Total: 14.22 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -6.53 Total: -116.15 kcal Atomic # 8 Polarization: -59.34 SS G_CDS: -1.07 Total: -60.42 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.90 -1.06 -77.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267079858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.261 kcal (2) G-P(sol) polarization free energy of solvation -76.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds