Wall clock time and date at job start Wed Apr 1 2020 00:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.42895 * 109.47503 * 180.02562 * 3 2 1 5 5 C 1.42902 * 114.00370 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47205 * 179.97438 * 5 4 3 7 7 O 1.21285 * 120.00147 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00198 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00491 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47080 * 325.00149 * 9 8 6 11 11 C 1.53001 * 109.46917 * 84.99432 * 9 8 6 12 12 C 1.53004 * 109.47020 * 60.00654 * 11 9 8 13 13 C 1.53003 * 109.47187 * 59.99421 * 12 11 9 14 14 C 1.52996 * 109.47135 * 300.00307 * 13 12 11 15 15 H 1.08998 * 109.47155 * 299.99563 * 14 13 12 16 16 N 1.46900 * 109.46826 * 180.02562 * 14 13 12 17 17 C 1.46895 * 111.00579 * 84.99731 * 16 14 13 18 18 C 1.50696 * 109.47597 * 179.97438 * 17 16 14 19 19 O 1.21295 * 119.99762 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00499 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00392 * 180.02562 * 20 18 17 22 22 H 1.07994 * 119.99657 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99832 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99883 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99535 * 179.97438 * 23 21 20 26 26 H 1.48511 * 109.47033 * 60.00517 * 25 23 21 27 27 H 1.48504 * 109.47101 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47582 * 300.00414 * 25 23 21 29 29 C 1.52993 * 109.47162 * 60.00056 * 14 13 12 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 35 35 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 36 36 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 37 37 H 1.08999 * 109.46857 * 300.00103 * 5 4 3 38 38 H 1.09001 * 109.46918 * 59.99989 * 5 4 3 39 39 H 0.97003 * 119.99690 * 359.97438 * 8 6 5 40 40 H 1.09002 * 109.47372 * 179.97438 * 11 9 8 41 41 H 1.08998 * 109.47448 * 300.00539 * 11 9 8 42 42 H 1.08993 * 109.47201 * 179.97438 * 12 11 9 43 43 H 1.09006 * 109.46900 * 299.99603 * 12 11 9 44 44 H 1.08994 * 109.46765 * 60.00641 * 13 12 11 45 45 H 1.09004 * 109.46736 * 179.97438 * 13 12 11 46 46 H 1.00908 * 110.99789 * 321.04232 * 16 14 13 47 47 H 1.09003 * 109.47357 * 300.00183 * 17 16 14 48 48 H 1.09006 * 109.46717 * 59.99760 * 17 16 14 49 49 H 0.97001 * 119.99942 * 0.02562 * 20 18 17 50 50 H 0.97006 * 119.99518 * 180.02562 * 24 23 21 51 51 H 1.09009 * 109.47176 * 180.02562 * 29 14 13 52 52 H 1.08998 * 109.47488 * 59.99711 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7481 -0.0012 6 6 5.5524 2.6291 -0.0012 7 8 6.0741 1.5342 -0.0002 8 7 6.3163 3.7394 -0.0012 9 6 7.7768 3.6239 -0.0006 10 1 8.0723 2.7562 0.5892 11 6 8.2758 3.4578 -1.4374 12 6 7.8610 4.6757 -2.2654 13 6 8.4723 5.9390 -1.6559 14 6 7.9733 6.1050 -0.2191 15 1 6.8867 6.1910 -0.2196 16 7 8.5598 7.3181 0.3658 17 6 7.7672 8.5056 0.0201 18 6 8.3977 9.7275 0.6368 19 8 9.4084 9.6198 1.2987 20 7 7.8393 10.9401 0.4519 21 6 8.4133 12.0518 1.0125 22 1 9.3131 11.9559 1.6019 23 6 7.8372 13.3020 0.8223 24 7 6.7420 13.4185 0.1055 25 14 8.6188 14.8166 1.5867 26 1 10.0011 14.9758 1.0674 27 1 7.8179 16.0171 1.2367 28 1 8.6595 14.6611 3.0629 29 6 8.3881 4.8871 0.6087 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.7281 3.2887 -0.8912 38 1 3.7289 3.2892 0.8887 39 1 5.8991 4.6152 -0.0016 40 1 9.3624 3.3722 -1.4371 41 1 7.8402 2.5579 -1.8716 42 1 8.2168 4.5576 -3.2888 43 1 6.7743 4.7618 -2.2658 44 1 9.5589 5.8529 -1.6555 45 1 8.1772 6.8066 -2.2460 46 1 9.5211 7.4292 0.0797 47 1 7.7370 8.6195 -1.0635 48 1 6.7527 8.3889 0.4016 49 1 7.0313 11.0263 -0.0778 50 1 6.3400 14.2912 -0.0276 51 1 8.0322 5.0051 1.6323 52 1 9.4747 4.8010 0.6092 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267079860.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:46 Heat of formation + Delta-G solvation = -139.436255 kcal Electronic energy + Delta-G solvation = -29589.269850 eV Core-core repulsion = 25394.835271 eV Total energy + Delta-G solvation = -4194.434579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.54204 -39.03262 -38.21406 -37.68051 -35.14294 -34.06965 -33.92710 -33.23914 -31.26442 -30.62964 -29.59934 -28.18795 -26.16185 -25.93340 -24.01536 -22.71686 -22.02942 -21.75854 -21.30293 -19.59108 -19.13018 -17.92777 -17.61764 -17.05326 -16.90754 -16.43898 -15.69403 -15.57213 -15.31965 -15.14535 -14.92583 -14.52337 -14.47697 -14.35654 -13.83855 -13.80104 -13.66728 -13.29859 -13.06206 -12.57250 -12.54239 -12.51699 -12.46075 -12.33487 -12.31707 -12.03518 -11.70049 -11.54378 -11.34857 -11.32206 -11.29342 -11.05501 -10.93252 -10.59454 -10.46649 -10.37029 -10.22858 -10.08924 -9.97631 -9.52660 -9.26949 -8.49109 -8.06635 -7.98377 -6.44558 -3.85393 2.39026 2.51705 3.18152 3.24004 3.28407 3.60127 3.87675 4.01554 4.23647 4.41531 4.51800 4.55726 4.57443 4.63285 4.74962 4.80620 4.84548 4.88939 4.95802 4.99882 5.03968 5.05733 5.14174 5.21476 5.23056 5.29218 5.36363 5.41859 5.48392 5.57064 5.59131 5.69974 5.74064 5.78824 5.81588 5.85236 5.92428 5.94716 6.05635 6.09395 6.19565 6.25391 6.32737 6.66860 7.19348 7.25770 7.52403 7.61930 8.00079 8.03366 8.58320 9.15114 9.51282 10.02796 10.73052 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.001839 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.833478 B =15225.055617 C =16758.916300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.043 3.957 6 C 0.515 3.485 7 O -0.521 6.521 8 N -0.721 5.721 9 C 0.150 3.850 10 H 0.090 0.910 11 C -0.131 4.131 12 C -0.112 4.112 13 C -0.153 4.153 14 C 0.089 3.911 15 H 0.071 0.929 16 N -0.663 5.663 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 C -0.115 4.115 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.401 0.599 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.351 0.649 47 H 0.043 0.957 48 H 0.084 0.916 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.079 0.921 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.878 -22.147 -5.188 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.283 6.283 5 C -0.037 4.037 6 C 0.300 3.700 7 O -0.396 6.396 8 N -0.375 5.375 9 C 0.046 3.954 10 H 0.108 0.892 11 C -0.170 4.170 12 C -0.150 4.150 13 C -0.193 4.193 14 C -0.022 4.022 15 H 0.089 0.911 16 N -0.294 5.294 17 C -0.082 4.082 18 C 0.225 3.775 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.153 4.153 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.236 0.764 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.171 0.829 47 H 0.061 0.939 48 H 0.102 0.898 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.097 0.903 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.123 -23.080 -4.154 25.163 hybrid contribution -0.403 1.839 -1.019 2.140 sum -9.526 -21.242 -5.173 23.848 Atomic orbital electron populations 1.21700 0.94616 1.02347 1.02063 1.21448 0.95644 0.95371 1.03643 1.22650 0.80409 0.98336 1.00367 1.87997 1.19631 1.25205 1.95459 1.22210 0.91790 0.87014 1.02723 1.20221 0.88575 0.84724 0.76527 1.90727 1.74579 1.26481 1.47823 1.46051 1.07133 1.08613 1.75746 1.21000 0.78577 0.99179 0.96694 0.89180 1.21939 1.01368 0.98440 0.95213 1.21425 1.00567 0.94196 0.98827 1.22363 1.01321 0.98122 0.97460 1.21555 0.98742 0.90681 0.91233 0.91062 1.60186 1.06438 1.00420 1.62360 1.21696 0.98056 0.90476 0.97953 1.19820 0.87284 0.84155 0.86240 1.90528 1.26621 1.85752 1.43822 1.41855 1.26102 1.05346 1.46693 1.19662 1.09970 0.84203 1.29181 0.87966 1.25259 0.96139 0.99252 0.97239 1.69603 1.19618 1.25637 1.39489 0.85915 0.78853 0.79953 0.79483 1.19912 1.20979 1.19870 1.21802 1.01748 0.91831 0.99937 0.92466 0.92490 0.91937 0.90966 0.91002 0.93117 0.93053 0.90275 0.90153 0.76402 0.90827 0.91487 0.92048 0.92146 0.91410 0.91791 0.82898 0.93891 0.89779 0.77503 0.91822 0.90261 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.82 6.30 -26.73 -0.17 -0.99 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 O -0.36 -3.85 9.88 -55.14 -0.54 -4.39 16 5 C 0.04 0.35 6.42 36.00 0.23 0.58 16 6 C 0.51 5.52 7.87 -10.99 -0.09 5.43 16 7 O -0.52 -7.88 16.16 -14.36 -0.23 -8.11 16 8 N -0.72 -6.21 4.23 -53.81 -0.23 -6.44 16 9 C 0.15 1.40 2.78 -67.93 -0.19 1.21 16 10 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 11 C -0.13 -1.18 5.60 -26.73 -0.15 -1.33 16 12 C -0.11 -0.95 5.77 -26.73 -0.15 -1.11 16 13 C -0.15 -1.47 5.17 -26.73 -0.14 -1.61 16 14 C 0.09 0.93 2.30 -67.72 -0.16 0.78 16 15 H 0.07 0.69 6.16 -51.93 -0.32 0.37 16 16 N -0.66 -9.76 5.87 -108.00 -0.63 -10.39 16 17 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 18 C 0.44 10.07 7.82 -10.99 -0.09 9.99 16 19 O -0.58 -15.53 15.78 5.54 0.09 -15.45 16 20 N -0.56 -13.96 5.29 -10.97 -0.06 -14.02 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 25 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 C -0.11 -1.12 5.21 -26.74 -0.14 -1.26 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.40 2.72 6.87 -40.82 -0.28 2.44 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.50 7.60 -51.93 -0.39 0.10 16 44 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 45 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 46 H 0.35 5.48 8.17 -39.29 -0.32 5.16 16 47 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 48 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 49 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 50 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 51 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 52 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 418.19 15.07 6.30 6.30 Total: -1.00 -33.82 418.19 -9.40 -43.22 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -9.07 Total: 12.04 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.72 Total: 4.87 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.20 Total: -54.28 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.69 Total: -27.95 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.82 -9.40 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267079860.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.215 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds