Wall clock time and date at job start Wed Apr 1 2020 00:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.42895 * 109.47503 * 180.02562 * 3 2 1 5 5 C 1.42902 * 114.00370 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47205 * 179.97438 * 5 4 3 7 7 O 1.21285 * 120.00147 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00198 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00491 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47080 * 325.00149 * 9 8 6 11 11 C 1.53001 * 109.46917 * 84.99432 * 9 8 6 12 12 C 1.53004 * 109.47020 * 60.00654 * 11 9 8 13 13 C 1.53003 * 109.47187 * 59.99421 * 12 11 9 14 14 C 1.52996 * 109.47135 * 300.00307 * 13 12 11 15 15 H 1.08998 * 109.47155 * 299.99563 * 14 13 12 16 16 N 1.46900 * 109.46826 * 180.02562 * 14 13 12 17 17 C 1.46895 * 111.00579 * 84.99731 * 16 14 13 18 18 C 1.50696 * 109.47597 * 179.97438 * 17 16 14 19 19 O 1.21295 * 119.99762 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00499 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00392 * 180.02562 * 20 18 17 22 22 H 1.07994 * 119.99657 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99832 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99883 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99535 * 179.97438 * 23 21 20 26 26 H 1.48511 * 109.47033 * 60.00517 * 25 23 21 27 27 H 1.48504 * 109.47101 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47582 * 300.00414 * 25 23 21 29 29 C 1.52993 * 109.47162 * 60.00056 * 14 13 12 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 35 35 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 36 36 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 37 37 H 1.08999 * 109.46857 * 300.00103 * 5 4 3 38 38 H 1.09001 * 109.46918 * 59.99989 * 5 4 3 39 39 H 0.97003 * 119.99690 * 359.97438 * 8 6 5 40 40 H 1.09002 * 109.47372 * 179.97438 * 11 9 8 41 41 H 1.08998 * 109.47448 * 300.00539 * 11 9 8 42 42 H 1.08993 * 109.47201 * 179.97438 * 12 11 9 43 43 H 1.09006 * 109.46900 * 299.99603 * 12 11 9 44 44 H 1.08994 * 109.46765 * 60.00641 * 13 12 11 45 45 H 1.09004 * 109.46736 * 179.97438 * 13 12 11 46 46 H 1.00908 * 110.99789 * 321.04232 * 16 14 13 47 47 H 1.09003 * 109.47357 * 300.00183 * 17 16 14 48 48 H 1.09006 * 109.46717 * 59.99760 * 17 16 14 49 49 H 0.97001 * 119.99942 * 0.02562 * 20 18 17 50 50 H 0.97006 * 119.99518 * 180.02562 * 24 23 21 51 51 H 1.09009 * 109.47176 * 180.02562 * 29 14 13 52 52 H 1.08998 * 109.47488 * 59.99711 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7481 -0.0012 6 6 5.5524 2.6291 -0.0012 7 8 6.0741 1.5342 -0.0002 8 7 6.3163 3.7394 -0.0012 9 6 7.7768 3.6239 -0.0006 10 1 8.0723 2.7562 0.5892 11 6 8.2758 3.4578 -1.4374 12 6 7.8610 4.6757 -2.2654 13 6 8.4723 5.9390 -1.6559 14 6 7.9733 6.1050 -0.2191 15 1 6.8867 6.1910 -0.2196 16 7 8.5598 7.3181 0.3658 17 6 7.7672 8.5056 0.0201 18 6 8.3977 9.7275 0.6368 19 8 9.4084 9.6198 1.2987 20 7 7.8393 10.9401 0.4519 21 6 8.4133 12.0518 1.0125 22 1 9.3131 11.9559 1.6019 23 6 7.8372 13.3020 0.8223 24 7 6.7420 13.4185 0.1055 25 14 8.6188 14.8166 1.5867 26 1 10.0011 14.9758 1.0674 27 1 7.8179 16.0171 1.2367 28 1 8.6595 14.6611 3.0629 29 6 8.3881 4.8871 0.6087 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.7281 3.2887 -0.8912 38 1 3.7289 3.2892 0.8887 39 1 5.8991 4.6152 -0.0016 40 1 9.3624 3.3722 -1.4371 41 1 7.8402 2.5579 -1.8716 42 1 8.2168 4.5576 -3.2888 43 1 6.7743 4.7618 -2.2658 44 1 9.5589 5.8529 -1.6555 45 1 8.1772 6.8066 -2.2460 46 1 9.5211 7.4292 0.0797 47 1 7.7370 8.6195 -1.0635 48 1 6.7527 8.3889 0.4016 49 1 7.0313 11.0263 -0.0778 50 1 6.3400 14.2912 -0.0276 51 1 8.0322 5.0051 1.6323 52 1 9.4747 4.8010 0.6092 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267079860.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:45 Heat of formation + Delta-G solvation = -163.714542 kcal Electronic energy + Delta-G solvation = -29590.322635 eV Core-core repulsion = 25394.835271 eV Total energy + Delta-G solvation = -4195.487365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37044 -40.22328 -39.52788 -38.52880 -36.34803 -35.73894 -34.58577 -34.15652 -33.23981 -31.43444 -30.62555 -28.83063 -27.72554 -26.46179 -25.64748 -23.48624 -22.68012 -22.52208 -22.07450 -21.10924 -20.22699 -19.85593 -18.38079 -17.88125 -17.70929 -17.48534 -16.96760 -16.43162 -16.35597 -16.24759 -16.05102 -15.97928 -15.57724 -15.24729 -15.10098 -14.88046 -14.50558 -14.35935 -14.16734 -13.72806 -13.54087 -13.25782 -13.24272 -13.19009 -13.04554 -13.00581 -12.99930 -12.86749 -12.78338 -12.41966 -12.15189 -12.12109 -11.83214 -11.78718 -11.71007 -11.49431 -11.41018 -11.19548 -10.83918 -10.67414 -10.31790 -10.07765 -9.99664 -9.21955 -8.45484 -5.93821 1.40666 1.42869 1.53265 1.59007 1.84158 2.08112 2.30141 2.90789 3.00236 3.22228 3.51192 3.71739 3.78542 3.81890 4.02806 4.03893 4.12046 4.19322 4.19528 4.25410 4.29578 4.34182 4.42277 4.42893 4.48911 4.57661 4.57911 4.63757 4.64404 4.65001 4.73091 4.85320 4.85631 5.06649 5.10904 5.14923 5.16263 5.23372 5.27669 5.34689 5.35557 5.39196 5.42323 5.56033 5.93765 6.10194 6.16386 6.43982 6.55706 6.62232 7.14495 7.24058 7.58799 8.14493 8.71490 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.001839 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.833478 B =15225.055617 C =16758.916300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.055 3.945 4 O -0.400 6.400 5 C 0.042 3.958 6 C 0.511 3.489 7 O -0.573 6.573 8 N -0.708 5.708 9 C 0.155 3.845 10 H 0.074 0.926 11 C -0.126 4.126 12 C -0.104 4.104 13 C -0.147 4.147 14 C 0.092 3.908 15 H 0.088 0.912 16 N -0.677 5.677 17 C 0.066 3.934 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.273 1.273 29 C -0.105 4.105 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.413 0.587 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.344 0.656 47 H 0.067 0.933 48 H 0.107 0.893 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.070 0.930 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.391 -21.582 -5.929 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C -0.021 4.021 4 O -0.320 6.320 5 C -0.037 4.037 6 C 0.298 3.702 7 O -0.452 6.452 8 N -0.362 5.362 9 C 0.050 3.950 10 H 0.092 0.908 11 C -0.165 4.165 12 C -0.143 4.143 13 C -0.186 4.186 14 C -0.017 4.017 15 H 0.106 0.894 16 N -0.308 5.308 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.144 4.144 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.250 0.750 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.163 0.837 47 H 0.085 0.915 48 H 0.125 0.875 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.089 0.911 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.674 -22.497 -4.915 25.381 hybrid contribution 0.091 1.603 -0.777 1.784 sum -10.583 -20.894 -5.691 24.103 Atomic orbital electron populations 1.21672 0.93041 1.02849 1.02687 1.21478 0.96979 0.95272 1.02595 1.22818 0.78952 0.98659 1.01652 1.87958 1.21429 1.26795 1.95779 1.22356 0.89534 0.86675 1.05129 1.20790 0.89908 0.84162 0.75337 1.90705 1.75673 1.28414 1.50403 1.45949 1.06747 1.08866 1.74671 1.20866 0.79082 0.98229 0.96776 0.90783 1.21880 1.01637 0.98209 0.94740 1.21369 1.00962 0.93072 0.98861 1.22281 1.01234 0.98547 0.96572 1.21618 0.99483 0.88928 0.91701 0.89394 1.60179 1.06107 1.00997 1.63475 1.21560 0.98362 0.87955 0.98706 1.20979 0.86444 0.85299 0.84903 1.90498 1.28549 1.86602 1.45484 1.41920 1.26439 1.05576 1.47097 1.19625 1.10209 0.86010 1.30649 0.90425 1.25994 0.96478 1.01349 0.97302 1.69657 1.20100 1.26547 1.39689 0.85021 0.78134 0.76877 0.78504 1.19779 1.19513 1.19830 1.21692 1.01734 0.91622 0.99354 0.91872 0.91767 0.91564 0.92124 0.92007 0.91624 0.91798 0.87470 0.87782 0.74966 0.90326 0.92797 0.91395 0.91347 0.91695 0.91878 0.83680 0.91536 0.87532 0.76933 0.91320 0.91093 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.48 16 2 C -0.13 -1.61 6.30 30.59 0.19 -1.41 16 3 C 0.06 0.71 5.94 71.98 0.43 1.14 16 4 O -0.40 -8.09 9.88 -129.94 -1.28 -9.37 16 5 C 0.04 0.60 6.42 71.24 0.46 1.06 16 6 C 0.51 10.46 7.87 87.66 0.69 11.15 16 7 O -0.57 -17.58 16.16 15.99 0.26 -17.32 16 8 N -0.71 -10.99 4.23 -442.54 -1.87 -12.87 16 9 C 0.16 2.75 2.78 44.99 0.13 2.88 16 10 H 0.07 1.60 7.58 -2.39 -0.02 1.58 16 11 C -0.13 -2.11 5.60 30.60 0.17 -1.94 16 12 C -0.10 -1.53 5.77 30.60 0.18 -1.35 16 13 C -0.15 -2.47 5.17 30.59 0.16 -2.32 16 14 C 0.09 1.73 2.30 44.91 0.10 1.84 16 15 H 0.09 1.38 6.16 -2.39 -0.01 1.36 16 16 N -0.68 -18.82 5.87 -495.61 -2.91 -21.73 16 17 C 0.07 2.05 5.96 85.56 0.51 2.56 16 18 C 0.44 19.88 7.82 87.66 0.69 20.56 16 19 O -0.62 -33.76 15.78 -3.08 -0.05 -33.81 16 20 N -0.57 -28.44 5.29 -306.99 -1.62 -30.07 16 21 C -0.34 -18.71 9.68 84.04 0.81 -17.90 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 24 N -0.92 -48.47 13.05 21.66 0.28 -48.18 16 25 Si 0.99 42.24 29.55 68.60 2.03 44.27 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 29 C -0.11 -1.92 5.21 30.59 0.16 -1.76 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.41 4.41 6.87 -92.71 -0.64 3.77 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.91 7.60 -2.38 -0.02 0.89 16 44 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 45 H 0.06 1.11 7.45 -2.38 -0.02 1.09 16 46 H 0.34 10.43 8.17 -89.69 -0.73 9.70 16 47 H 0.07 1.78 7.44 -2.39 -0.02 1.76 16 48 H 0.11 2.85 8.06 -2.38 -0.02 2.83 16 49 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 50 H 0.28 13.74 8.31 -92.70 -0.77 12.97 16 51 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 52 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -74.75 418.19 -0.49 -75.24 By element: Atomic # 1 Polarization: 41.12 SS G_CDS: -1.17 Total: 39.95 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 5.85 Total: 13.89 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -6.12 Total: -112.85 kcal Atomic # 8 Polarization: -59.43 SS G_CDS: -1.07 Total: -60.50 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -74.75 -0.49 -75.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267079860.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.473 kcal (2) G-P(sol) polarization free energy of solvation -74.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds