Wall clock time and date at job start Wed Apr 1 2020 00:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46660 * 2 1 4 4 O 1.42896 * 109.47466 * 119.99851 * 2 1 3 5 5 C 1.42897 * 114.00012 * 89.99861 * 4 2 1 6 6 C 1.52996 * 109.47215 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47106 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00230 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99921 * 180.02562 * 7 6 5 10 10 C 1.47527 * 125.63664 * 5.10032 * 9 7 6 11 11 C 1.54905 * 104.78240 * 155.84821 * 10 9 7 12 12 C 1.55159 * 101.61810 * 37.00297 * 11 10 9 13 13 C 1.47019 * 125.64641 * 185.06187 * 9 7 6 14 14 H 1.09000 * 109.88146 * 300.50880 * 13 9 7 15 15 C 1.53000 * 109.88292 * 61.67374 * 13 9 7 16 16 N 1.46896 * 109.47194 * 182.30010 * 15 13 9 17 17 C 1.46906 * 111.00225 * 185.06213 * 16 15 13 18 18 C 1.50693 * 109.47166 * 180.02562 * 17 16 15 19 19 O 1.21291 * 120.00223 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00042 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00324 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99906 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00006 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00291 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99859 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47190 * 89.99685 * 25 23 21 27 27 H 1.48496 * 109.47186 * 209.99696 * 25 23 21 28 28 H 1.48498 * 109.46929 * 329.99935 * 25 23 21 29 29 H 1.08997 * 109.47198 * 299.99622 * 1 2 3 30 30 H 1.09002 * 109.47225 * 60.00071 * 1 2 3 31 31 H 1.08998 * 109.46647 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47198 * 240.00378 * 2 1 3 33 33 H 1.08996 * 109.46619 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46854 * 299.99628 * 3 2 1 35 35 H 1.08997 * 109.47006 * 60.00261 * 3 2 1 36 36 H 1.09001 * 109.47145 * 60.00341 * 5 4 2 37 37 H 1.09001 * 109.47422 * 300.00368 * 5 4 2 38 38 H 1.08997 * 109.47096 * 60.00523 * 6 5 4 39 39 H 1.09001 * 109.47184 * 300.00463 * 6 5 4 40 40 H 1.08997 * 110.41005 * 37.01336 * 10 9 7 41 41 H 1.09004 * 110.37236 * 274.66201 * 10 9 7 42 42 H 1.09003 * 111.00266 * 278.90804 * 11 10 9 43 43 H 1.08996 * 111.00399 * 155.10014 * 11 10 9 44 44 H 1.08998 * 110.71473 * 82.84085 * 12 11 10 45 45 H 1.08997 * 110.72198 * 205.93932 * 12 11 10 46 46 H 1.08999 * 109.47417 * 302.30470 * 15 13 9 47 47 H 1.09007 * 109.47353 * 62.30449 * 15 13 9 48 48 H 1.00900 * 110.99668 * 61.11195 * 16 15 13 49 49 H 1.09002 * 109.46459 * 300.00407 * 17 16 15 50 50 H 1.09000 * 109.47050 * 60.00279 * 17 16 15 51 51 H 0.97005 * 119.99884 * 0.02562 * 20 18 17 52 52 H 0.97005 * 119.99885 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2002 -2.0781 0.9886 6 6 2.7081 -2.6925 2.2945 7 6 2.9130 -4.1737 2.1064 8 8 2.6757 -4.6874 1.0337 9 7 3.3590 -4.9277 3.1307 10 6 3.5835 -4.4568 4.5107 11 6 3.4735 -5.7303 5.3857 12 6 4.1356 -6.7953 4.4720 13 6 3.7014 -6.3556 3.0579 14 1 2.8305 -6.9300 2.7421 15 6 4.8522 -6.5651 2.0716 16 7 5.1502 -7.9995 1.9644 17 6 6.3283 -8.2307 1.1179 18 6 6.6021 -9.7100 1.0312 19 8 5.8866 -10.4946 1.6173 20 7 7.6427 -10.1612 0.3032 21 6 7.8922 -11.5070 0.2247 22 1 7.2550 -12.2057 0.7466 23 6 8.9654 -11.9721 -0.5255 24 7 9.7410 -11.1220 -1.1601 25 14 9.3057 -13.8058 -0.6318 26 1 8.5699 -14.3796 -1.7871 27 1 10.7626 -14.0292 -0.8125 28 1 8.8550 -14.4662 0.6195 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 2.9321 -2.2466 0.1986 37 1 1.2539 -2.5433 0.7125 38 1 1.9759 -2.5241 3.0842 39 1 3.6542 -2.2274 2.5711 40 1 2.8188 -3.7340 4.7948 41 1 4.5763 -4.0166 4.6046 42 1 2.4310 -5.9792 5.5840 43 1 4.0290 -5.6141 6.3163 44 1 5.2208 -6.7656 4.5690 45 1 3.7563 -7.7908 4.7027 46 1 4.5668 -6.1791 1.0930 47 1 5.7364 -6.0360 2.4272 48 1 4.3512 -8.5100 1.6193 49 1 6.1407 -7.8370 0.1189 50 1 7.1918 -7.7258 1.5512 51 1 8.2157 -9.5336 -0.1647 52 1 10.4900 -11.4468 -1.6840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267951238.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:55 Heat of formation + Delta-G solvation = -127.044423 kcal Electronic energy + Delta-G solvation = -29459.228220 eV Core-core repulsion = 25265.330991 eV Total energy + Delta-G solvation = -4193.897229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.51024 -38.81745 -38.24945 -37.67180 -35.23885 -33.83129 -33.68216 -32.11404 -31.22620 -30.93064 -29.99331 -27.64247 -26.79945 -25.08098 -24.41907 -23.11954 -22.36078 -21.71948 -20.92840 -19.43963 -18.89815 -17.89530 -17.69296 -16.98741 -16.55572 -16.22968 -15.86642 -15.42408 -15.35338 -15.07624 -14.74430 -14.47624 -14.21357 -13.96327 -13.80617 -13.57689 -13.45842 -13.34108 -13.26634 -12.87662 -12.83446 -12.63035 -12.32934 -12.26387 -12.15305 -11.82217 -11.68438 -11.59418 -11.54187 -11.47297 -11.34476 -11.06181 -11.05003 -10.86435 -10.83494 -10.37586 -10.19670 -10.06121 -9.91492 -9.48457 -8.91341 -8.40869 -8.01767 -7.92984 -6.39220 -3.80022 2.37571 2.53954 3.19689 3.28011 3.33816 3.35800 3.94182 4.13954 4.22043 4.31475 4.43698 4.48556 4.57720 4.60660 4.66751 4.76828 4.77807 4.86366 4.96180 5.06658 5.15564 5.18225 5.20034 5.23583 5.27604 5.30618 5.38041 5.41511 5.43140 5.45950 5.52737 5.56862 5.65065 5.76340 5.79423 5.81366 5.82111 5.86885 5.95142 6.02714 6.18267 6.23719 6.31622 6.86691 7.19022 7.29794 7.57485 7.67700 7.92086 8.08930 8.64030 9.20330 9.57167 10.08677 10.78582 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.001787 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.058696 B =15662.588505 C =17076.296131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.387 6.387 5 C 0.077 3.923 6 C -0.134 4.134 7 C 0.531 3.469 8 O -0.537 6.537 9 N -0.614 5.614 10 C 0.098 3.902 11 C -0.137 4.137 12 C -0.112 4.112 13 C 0.142 3.858 14 H 0.077 0.923 15 C 0.050 3.950 16 N -0.663 5.663 17 C 0.053 3.947 18 C 0.442 3.558 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.039 0.961 47 H 0.070 0.930 48 H 0.350 0.650 49 H 0.043 0.957 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 24.926 8.536 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.024 3.976 3 C -0.207 4.207 4 O -0.307 6.307 5 C 0.000 4.000 6 C -0.174 4.174 7 C 0.320 3.680 8 O -0.414 6.414 9 N -0.349 5.349 10 C -0.024 4.024 11 C -0.175 4.175 12 C -0.150 4.150 13 C 0.038 3.962 14 H 0.095 0.905 15 C -0.080 4.080 16 N -0.296 5.296 17 C -0.080 4.080 18 C 0.228 3.772 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.057 0.943 47 H 0.088 0.912 48 H 0.169 0.831 49 H 0.061 0.939 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.553 24.206 8.921 29.619 hybrid contribution 0.267 -0.402 -1.513 1.588 sum -14.287 23.804 7.408 28.734 Atomic orbital electron populations 1.22306 0.95968 1.02500 1.02562 1.22080 0.93666 0.93722 0.88131 1.21866 1.01872 0.94429 1.02507 1.87833 1.86762 1.20048 1.36020 1.22149 1.00555 0.80945 0.96315 1.21449 1.04420 0.91695 0.99821 1.20070 0.76576 0.88304 0.83037 1.90744 1.50702 1.74259 1.25666 1.48587 1.65490 1.10916 1.09949 1.22401 1.01488 0.97559 0.80997 1.22842 1.01929 0.94480 0.98294 1.22570 1.01844 0.99125 0.91480 1.21509 0.97408 0.80443 0.96805 0.90534 1.22237 0.97357 0.90202 0.98236 1.60004 1.07996 1.06723 1.54893 1.21647 0.94456 0.96456 0.95465 1.19790 0.84101 0.89154 0.84171 1.90515 1.50077 1.57163 1.48953 1.41864 1.26006 1.08372 1.43865 1.19710 1.11723 0.82827 1.28601 0.87909 1.25265 0.95971 1.00254 0.96503 1.69617 1.17803 1.34760 1.32181 0.85850 0.77332 0.82211 0.78842 1.20448 1.20944 1.19406 0.91789 0.91609 0.92379 0.92029 0.91938 0.91218 0.91805 0.92339 0.92463 0.88216 0.88038 0.90542 0.91022 0.90694 0.89693 0.89836 0.89396 0.94262 0.91165 0.83119 0.93892 0.89696 0.77466 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.53 37.16 0.35 -0.79 16 2 C 0.08 0.61 3.34 -26.72 -0.09 0.52 16 3 C -0.15 -0.89 9.56 37.16 0.36 -0.54 16 4 O -0.39 -3.58 9.99 -35.23 -0.35 -3.94 16 5 C 0.08 0.73 5.04 37.16 0.19 0.91 16 6 C -0.13 -1.11 5.16 -27.88 -0.14 -1.25 16 7 C 0.53 6.09 7.58 -10.98 -0.08 6.01 16 8 O -0.54 -8.27 15.18 5.56 0.08 -8.18 16 9 N -0.61 -6.28 3.07 -162.94 -0.50 -6.78 16 10 C 0.10 0.67 6.66 -2.48 -0.02 0.65 16 11 C -0.14 -0.95 7.08 -24.58 -0.17 -1.12 16 12 C -0.11 -1.12 6.22 -24.90 -0.15 -1.27 16 13 C 0.14 1.68 3.09 -66.95 -0.21 1.47 16 14 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.05 0.70 5.05 -3.83 -0.02 0.68 16 16 N -0.66 -11.16 5.83 -115.06 -0.67 -11.83 16 17 C 0.05 0.97 6.16 -4.98 -0.03 0.94 16 18 C 0.44 10.71 7.82 -10.99 -0.09 10.62 16 19 O -0.58 -16.05 15.78 5.55 0.09 -15.97 16 20 N -0.56 -14.64 5.29 -10.97 -0.06 -14.70 16 21 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 22 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 25 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 32 H 0.06 0.45 7.79 -51.93 -0.40 0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.59 8.04 -51.93 -0.42 0.18 16 37 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 38 H 0.10 0.67 7.77 -51.93 -0.40 0.26 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.38 7.51 -51.93 -0.39 -0.01 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.90 7.81 -51.93 -0.41 0.49 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.04 0.62 6.96 -51.93 -0.36 0.26 16 47 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 48 H 0.35 6.21 8.48 -39.29 -0.33 5.88 16 49 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 51 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 52 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 423.86 15.07 6.39 6.39 Total: -1.00 -33.65 423.86 -8.95 -42.60 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -9.28 Total: 11.60 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.35 Total: 8.71 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.50 Total: -57.50 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.18 Total: -28.09 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.65 -8.95 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267951238.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.448 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds