Wall clock time and date at job start Wed Apr 1 2020 00:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46660 * 2 1 4 4 O 1.42896 * 109.47466 * 119.99851 * 2 1 3 5 5 C 1.42897 * 114.00012 * 89.99861 * 4 2 1 6 6 C 1.52996 * 109.47215 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47106 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00230 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99921 * 180.02562 * 7 6 5 10 10 C 1.47527 * 125.63664 * 5.10032 * 9 7 6 11 11 C 1.54905 * 104.78240 * 155.84821 * 10 9 7 12 12 C 1.55159 * 101.61810 * 37.00297 * 11 10 9 13 13 C 1.47019 * 125.64641 * 185.06187 * 9 7 6 14 14 H 1.09000 * 109.88146 * 300.50880 * 13 9 7 15 15 C 1.53000 * 109.88292 * 61.67374 * 13 9 7 16 16 N 1.46896 * 109.47194 * 182.30010 * 15 13 9 17 17 C 1.46906 * 111.00225 * 185.06213 * 16 15 13 18 18 C 1.50693 * 109.47166 * 180.02562 * 17 16 15 19 19 O 1.21291 * 120.00223 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00042 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00324 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99906 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00006 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00291 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99859 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47190 * 89.99685 * 25 23 21 27 27 H 1.48496 * 109.47186 * 209.99696 * 25 23 21 28 28 H 1.48498 * 109.46929 * 329.99935 * 25 23 21 29 29 H 1.08997 * 109.47198 * 299.99622 * 1 2 3 30 30 H 1.09002 * 109.47225 * 60.00071 * 1 2 3 31 31 H 1.08998 * 109.46647 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47198 * 240.00378 * 2 1 3 33 33 H 1.08996 * 109.46619 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46854 * 299.99628 * 3 2 1 35 35 H 1.08997 * 109.47006 * 60.00261 * 3 2 1 36 36 H 1.09001 * 109.47145 * 60.00341 * 5 4 2 37 37 H 1.09001 * 109.47422 * 300.00368 * 5 4 2 38 38 H 1.08997 * 109.47096 * 60.00523 * 6 5 4 39 39 H 1.09001 * 109.47184 * 300.00463 * 6 5 4 40 40 H 1.08997 * 110.41005 * 37.01336 * 10 9 7 41 41 H 1.09004 * 110.37236 * 274.66201 * 10 9 7 42 42 H 1.09003 * 111.00266 * 278.90804 * 11 10 9 43 43 H 1.08996 * 111.00399 * 155.10014 * 11 10 9 44 44 H 1.08998 * 110.71473 * 82.84085 * 12 11 10 45 45 H 1.08997 * 110.72198 * 205.93932 * 12 11 10 46 46 H 1.08999 * 109.47417 * 302.30470 * 15 13 9 47 47 H 1.09007 * 109.47353 * 62.30449 * 15 13 9 48 48 H 1.00900 * 110.99668 * 61.11195 * 16 15 13 49 49 H 1.09002 * 109.46459 * 300.00407 * 17 16 15 50 50 H 1.09000 * 109.47050 * 60.00279 * 17 16 15 51 51 H 0.97005 * 119.99884 * 0.02562 * 20 18 17 52 52 H 0.97005 * 119.99885 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2002 -2.0781 0.9886 6 6 2.7081 -2.6925 2.2945 7 6 2.9130 -4.1737 2.1064 8 8 2.6757 -4.6874 1.0337 9 7 3.3590 -4.9277 3.1307 10 6 3.5835 -4.4568 4.5107 11 6 3.4735 -5.7303 5.3857 12 6 4.1356 -6.7953 4.4720 13 6 3.7014 -6.3556 3.0579 14 1 2.8305 -6.9300 2.7421 15 6 4.8522 -6.5651 2.0716 16 7 5.1502 -7.9995 1.9644 17 6 6.3283 -8.2307 1.1179 18 6 6.6021 -9.7100 1.0312 19 8 5.8866 -10.4946 1.6173 20 7 7.6427 -10.1612 0.3032 21 6 7.8922 -11.5070 0.2247 22 1 7.2550 -12.2057 0.7466 23 6 8.9654 -11.9721 -0.5255 24 7 9.7410 -11.1220 -1.1601 25 14 9.3057 -13.8058 -0.6318 26 1 8.5699 -14.3796 -1.7871 27 1 10.7626 -14.0292 -0.8125 28 1 8.8550 -14.4662 0.6195 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 2.9321 -2.2466 0.1986 37 1 1.2539 -2.5433 0.7125 38 1 1.9759 -2.5241 3.0842 39 1 3.6542 -2.2274 2.5711 40 1 2.8188 -3.7340 4.7948 41 1 4.5763 -4.0166 4.6046 42 1 2.4310 -5.9792 5.5840 43 1 4.0290 -5.6141 6.3163 44 1 5.2208 -6.7656 4.5690 45 1 3.7563 -7.7908 4.7027 46 1 4.5668 -6.1791 1.0930 47 1 5.7364 -6.0360 2.4272 48 1 4.3512 -8.5100 1.6193 49 1 6.1407 -7.8370 0.1189 50 1 7.1918 -7.7258 1.5512 51 1 8.2157 -9.5336 -0.1647 52 1 10.4900 -11.4468 -1.6840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267951238.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:54 Heat of formation + Delta-G solvation = -151.338924 kcal Electronic energy + Delta-G solvation = -29460.281709 eV Core-core repulsion = 25265.330991 eV Total energy + Delta-G solvation = -4194.950718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37688 -40.17875 -39.46641 -38.60472 -36.64355 -35.80822 -34.35775 -33.30516 -32.89983 -31.71212 -30.99263 -28.28264 -28.12461 -26.41595 -25.60400 -24.34659 -23.15321 -22.29288 -21.76356 -21.17788 -20.05952 -19.76589 -18.52456 -18.00014 -17.62908 -17.21531 -16.93874 -16.81376 -16.53883 -16.10151 -15.98340 -15.74926 -15.44955 -15.28743 -14.95216 -14.89666 -14.54487 -14.13383 -14.02524 -13.89747 -13.62579 -13.48524 -13.43829 -13.22758 -13.18194 -13.09626 -12.86866 -12.80602 -12.61603 -12.43930 -12.43228 -12.18267 -12.12370 -11.97173 -11.85321 -11.63094 -11.57673 -11.52490 -11.00443 -10.58690 -10.40523 -10.04078 -9.74743 -9.42567 -8.48231 -5.97538 1.37303 1.41033 1.50743 1.54404 1.74089 2.01613 2.28157 2.66004 2.95831 3.18425 3.44236 3.54615 3.69117 3.77884 3.88289 3.94788 3.96689 4.12954 4.16133 4.23504 4.24815 4.28340 4.32247 4.39520 4.43471 4.47445 4.50422 4.63216 4.68781 4.72962 4.74787 4.77227 4.86656 4.89683 4.91717 4.96787 5.05472 5.06362 5.18490 5.26844 5.32303 5.34260 5.39292 5.43892 5.79020 6.02725 6.20985 6.24110 6.47895 6.57216 7.05881 7.09986 7.52767 8.07642 8.69235 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.001787 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.058696 B =15662.588505 C =17076.296131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.146 4.146 4 O -0.393 6.393 5 C 0.080 3.920 6 C -0.122 4.122 7 C 0.526 3.474 8 O -0.586 6.586 9 N -0.612 5.612 10 C 0.094 3.906 11 C -0.127 4.127 12 C -0.111 4.111 13 C 0.142 3.858 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.667 5.667 17 C 0.066 3.934 18 C 0.440 3.560 19 O -0.620 6.620 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.996 3.004 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.020 0.980 47 H 0.081 0.919 48 H 0.342 0.658 49 H 0.056 0.944 50 H 0.107 0.893 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.240 26.646 9.814 31.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 C -0.203 4.203 4 O -0.314 6.314 5 C 0.003 3.997 6 C -0.161 4.161 7 C 0.316 3.684 8 O -0.467 6.467 9 N -0.346 5.346 10 C -0.027 4.027 11 C -0.165 4.165 12 C -0.149 4.149 13 C 0.038 3.962 14 H 0.074 0.926 15 C -0.070 4.070 16 N -0.298 5.298 17 C -0.066 4.066 18 C 0.227 3.773 19 O -0.506 6.506 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.819 3.181 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.196 1.196 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.038 0.962 47 H 0.099 0.901 48 H 0.160 0.840 49 H 0.074 0.926 50 H 0.125 0.875 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.299 25.975 10.228 31.365 hybrid contribution 0.164 -0.899 -1.917 2.124 sum -14.134 25.076 8.310 29.960 Atomic orbital electron populations 1.22284 0.95239 1.02133 1.03379 1.22305 0.94374 0.94417 0.87520 1.21864 1.01645 0.93423 1.03384 1.87813 1.86925 1.19710 1.36909 1.22044 0.99644 0.81270 0.96711 1.21400 1.05953 0.89039 0.99740 1.20672 0.75721 0.89555 0.82460 1.90723 1.52906 1.75337 1.27716 1.48678 1.64537 1.10043 1.11302 1.22706 1.03394 0.98005 0.78601 1.22843 1.02147 0.93006 0.98468 1.22501 1.01665 0.99688 0.91015 1.21390 0.95732 0.81721 0.97389 0.92613 1.22214 0.98635 0.88154 0.98002 1.60034 1.07155 1.08462 1.54189 1.21515 0.96017 0.92246 0.96865 1.20725 0.82734 0.91348 0.82495 1.90484 1.51059 1.58960 1.50142 1.41928 1.26727 1.07830 1.44466 1.19700 1.12767 0.83806 1.30235 0.90169 1.26084 0.95111 1.04701 0.95433 1.69680 1.17928 1.36520 1.32019 0.84890 0.77783 0.76716 0.78707 1.19693 1.19425 1.19640 0.91622 0.90137 0.93327 0.92367 0.92280 0.89597 0.91674 0.93784 0.93588 0.85887 0.86148 0.87829 0.89426 0.90305 0.87424 0.90361 0.90538 0.96180 0.90051 0.84028 0.92598 0.87516 0.77026 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.53 71.98 0.69 -1.40 16 2 C 0.07 1.01 3.34 30.60 0.10 1.11 16 3 C -0.15 -1.55 9.56 71.99 0.69 -0.86 16 4 O -0.39 -6.90 9.99 -148.98 -1.49 -8.39 16 5 C 0.08 1.49 5.04 71.98 0.36 1.85 16 6 C -0.12 -1.80 5.16 29.85 0.15 -1.65 16 7 C 0.53 11.71 7.58 87.66 0.66 12.38 16 8 O -0.59 -18.64 15.18 -3.04 -0.05 -18.69 16 9 N -0.61 -11.67 3.07 -787.79 -2.42 -14.08 16 10 C 0.09 0.97 6.66 86.83 0.58 1.55 16 11 C -0.13 -1.39 7.08 31.99 0.23 -1.17 16 12 C -0.11 -2.09 6.22 31.78 0.20 -1.89 16 13 C 0.14 3.34 3.09 45.34 0.14 3.48 16 14 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 15 C 0.06 1.68 5.05 86.30 0.44 2.11 16 16 N -0.67 -22.68 5.83 -517.93 -3.02 -25.70 16 17 C 0.07 2.45 6.16 85.55 0.53 2.97 16 18 C 0.44 21.72 7.82 87.66 0.69 22.40 16 19 O -0.62 -35.19 15.78 -3.06 -0.05 -35.24 16 20 N -0.57 -30.30 5.29 -306.99 -1.62 -31.93 16 21 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 22 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -50.54 13.05 21.66 0.28 -50.26 16 25 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.67 7.87 -2.39 -0.02 0.65 16 32 H 0.06 0.85 7.79 -2.39 -0.02 0.83 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.04 0.92 8.04 -2.39 -0.02 0.90 16 37 H 0.05 0.94 7.83 -2.39 -0.02 0.92 16 38 H 0.12 1.27 7.77 -2.39 -0.02 1.25 16 39 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 0.58 7.51 -2.39 -0.02 0.56 16 41 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 1.57 7.81 -2.39 -0.02 1.55 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.02 0.64 6.96 -2.39 -0.02 0.63 16 47 H 0.08 2.08 8.07 -2.38 -0.02 2.06 16 48 H 0.34 12.59 8.48 -89.69 -0.76 11.83 16 49 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 51 H 0.40 19.97 7.90 -92.70 -0.73 19.24 16 52 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -74.71 423.86 -0.19 -74.90 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.58 Total: 41.87 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 6.73 Total: 21.96 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -6.78 Total: -121.97 kcal Atomic # 8 Polarization: -60.73 SS G_CDS: -1.58 Total: -62.32 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.71 -0.19 -74.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267951238.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.441 kcal (2) G-P(sol) polarization free energy of solvation -74.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds