Wall clock time and date at job start Wed Apr 1 2020 01:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46921 * 2 1 4 4 C 1.50702 * 109.46945 * 239.99761 * 2 1 3 5 5 O 1.21281 * 120.00051 * 239.99842 * 4 2 1 6 6 N 1.34779 * 119.99840 * 60.00163 * 4 2 1 7 7 C 1.46494 * 119.99921 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47283 * 179.97438 * 7 6 4 9 9 H 1.08999 * 109.47269 * 305.00317 * 8 7 6 10 10 O 1.42903 * 109.46459 * 65.00211 * 8 7 6 11 11 C 1.53001 * 109.47376 * 185.00021 * 8 7 6 12 12 N 1.46898 * 109.46893 * 180.02562 * 11 8 7 13 13 C 1.46900 * 110.99589 * 180.02562 * 12 11 8 14 14 C 1.50705 * 109.47217 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99619 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00394 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00100 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99991 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99700 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00117 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99605 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47449 * 60.00044 * 21 19 17 23 23 H 1.48506 * 109.47113 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47294 * 300.00045 * 21 19 17 25 25 C 1.53000 * 109.47387 * 120.00175 * 2 1 3 26 26 C 1.54269 * 110.02870 * 297.90648 * 25 2 1 27 27 C 1.54961 * 104.16086 * 217.13340 * 26 25 2 28 28 C 1.54895 * 102.77531 * 37.89030 * 27 26 25 29 29 C 1.53867 * 110.03435 * 180.69125 * 25 2 1 30 30 H 1.09007 * 109.46886 * 299.99878 * 1 2 3 31 31 H 1.08999 * 109.47534 * 60.00018 * 1 2 3 32 32 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 33 33 H 0.96999 * 119.99691 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.47040 * 60.00167 * 7 6 4 35 35 H 1.08999 * 109.47079 * 299.99869 * 7 6 4 36 36 H 0.96700 * 114.00311 * 60.00313 * 10 8 7 37 37 H 1.08999 * 109.47164 * 300.00361 * 11 8 7 38 38 H 1.08997 * 109.47124 * 60.00063 * 11 8 7 39 39 H 1.00893 * 111.00468 * 56.04908 * 12 11 8 40 40 H 1.09002 * 109.47169 * 299.99734 * 13 12 11 41 41 H 1.09003 * 109.47314 * 59.99718 * 13 12 11 42 42 H 0.97006 * 119.99935 * 359.97438 * 16 14 13 43 43 H 0.97003 * 119.99893 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.01826 * 59.29238 * 25 2 1 45 45 H 1.09002 * 110.49087 * 335.78313 * 26 25 2 46 46 H 1.09008 * 110.48911 * 98.42693 * 26 25 2 47 47 H 1.09000 * 110.72403 * 279.57696 * 27 26 25 48 48 H 1.08998 * 110.92581 * 156.29298 * 27 26 25 49 49 H 1.08999 * 110.48635 * 203.40473 * 28 27 26 50 50 H 1.09000 * 110.59968 * 80.81569 * 28 27 26 51 51 H 1.09003 * 110.03464 * 238.56503 * 29 25 2 52 52 H 1.09001 * 110.03305 * 359.97438 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9403 -3.6507 8 6 1.6848 -0.2195 -4.9000 9 1 0.5984 -0.1420 -4.8563 10 8 2.2537 1.0900 -4.9602 11 6 2.0900 -1.0095 -6.1461 12 7 1.6002 -0.3170 -7.3455 13 6 1.9711 -1.0488 -8.5640 14 6 1.4524 -0.3104 -9.7710 15 8 0.8340 0.7235 -9.6299 16 7 1.6754 -0.7988 -11.0072 17 6 1.2039 -0.1267 -12.1051 18 1 0.6541 0.7943 -11.9795 19 6 1.4344 -0.6300 -13.3796 20 7 2.1047 -1.7498 -13.5325 21 14 0.7913 0.2854 -14.8756 22 1 1.3830 1.6468 -14.9151 23 1 1.1668 -0.4540 -16.1075 24 1 -0.6877 0.3907 -14.7935 25 6 2.0401 -0.7213 1.2492 26 6 1.5767 0.0258 2.5169 27 6 2.7747 -0.1019 3.4914 28 6 3.9976 0.0383 2.5511 29 6 3.5786 -0.7137 1.2710 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.1493 0.5389 -2.5435 34 1 1.8324 -1.9681 -3.6508 35 1 3.2854 -0.9399 -3.6506 36 1 3.2198 1.0976 -5.0012 37 1 3.1764 -1.0869 -6.1898 38 1 1.6561 -2.0083 -6.1001 39 1 1.9374 0.6334 -7.3774 40 1 3.0566 -1.1273 -8.6245 41 1 1.5357 -2.0477 -8.5348 42 1 2.1703 -1.6254 -11.1201 43 1 2.2653 -2.1014 -14.4222 44 1 1.6714 -1.7469 1.2645 45 1 1.3786 1.0737 2.2913 46 1 0.6899 -0.4491 2.9370 47 1 2.7726 -1.0764 3.9797 48 1 2.7622 0.6989 4.2307 49 1 4.8767 -0.4272 2.9966 50 1 4.1932 1.0877 2.3303 51 1 3.9567 -1.7357 1.2977 52 1 3.9619 -0.1966 0.3914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268328888.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:04 Heat of formation + Delta-G solvation = -151.478016 kcal Electronic energy + Delta-G solvation = -29100.526749 eV Core-core repulsion = 24905.569999 eV Total energy + Delta-G solvation = -4194.956749 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60332 -38.81736 -38.22270 -37.69901 -34.96119 -34.54740 -33.78792 -33.67876 -31.24463 -30.33972 -29.10719 -28.04365 -27.20034 -25.21128 -24.12194 -23.02769 -21.93423 -20.96709 -20.74848 -19.78303 -19.25874 -17.91014 -17.64902 -17.05855 -16.52108 -16.24450 -15.98438 -15.59712 -15.46432 -15.25315 -14.81644 -14.64790 -14.46456 -14.06707 -13.79449 -13.70238 -13.62940 -13.43785 -13.24174 -12.96389 -12.75606 -12.66034 -12.37352 -11.94635 -11.82763 -11.59513 -11.51936 -11.44859 -11.40788 -11.35075 -11.17177 -11.04751 -11.00963 -10.97378 -10.66918 -10.44605 -10.41521 -10.21391 -9.88517 -9.50290 -9.35964 -8.47574 -8.09994 -7.96508 -6.41938 -3.82850 2.39212 2.82366 3.20188 3.25847 3.30356 3.89620 3.95043 4.11234 4.16879 4.22725 4.24997 4.28092 4.52491 4.68988 4.72814 4.76564 4.79023 4.88850 4.98650 5.11285 5.12117 5.21055 5.22945 5.25957 5.28038 5.28880 5.33889 5.39614 5.40625 5.46621 5.55968 5.59118 5.64744 5.70842 5.73812 5.79591 5.88223 5.93724 5.94661 6.04786 6.10009 6.13800 6.24719 7.12912 7.21025 7.37838 7.54833 7.65708 7.96319 8.05771 8.60961 9.17519 9.53746 10.05355 10.75716 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.041572 B = 0.001388 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.373888 B =20168.503409 C =20404.147541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 H 0.097 0.903 4 C 0.515 3.485 5 O -0.538 6.538 6 N -0.724 5.724 7 C 0.089 3.911 8 C 0.099 3.901 9 H 0.115 0.885 10 O -0.553 6.553 11 C 0.031 3.969 12 N -0.663 5.663 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.582 6.582 16 N -0.563 5.563 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.071 4.071 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.129 4.129 29 C -0.108 4.108 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.405 0.595 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.373 0.627 37 H 0.032 0.968 38 H 0.082 0.918 39 H 0.356 0.644 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.066 0.934 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 1.072 31.720 31.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 H 0.115 0.885 4 C 0.301 3.699 5 O -0.414 6.414 6 N -0.376 5.376 7 C -0.036 4.036 8 C 0.039 3.961 9 H 0.133 0.867 10 O -0.358 6.358 11 C -0.100 4.100 12 N -0.297 5.297 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.466 6.466 16 N -0.200 5.200 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.090 4.090 26 C -0.157 4.157 27 C -0.163 4.163 28 C -0.167 4.167 29 C -0.146 4.146 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.240 0.760 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.220 0.780 37 H 0.050 0.950 38 H 0.101 0.899 39 H 0.177 0.823 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.085 0.915 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.185 0.842 31.735 31.768 hybrid contribution 1.328 0.085 -1.166 1.769 sum 2.513 0.927 30.569 30.686 Atomic orbital electron populations 1.21820 0.92823 1.02886 1.02861 1.21485 0.97517 1.00703 0.92870 0.88500 1.20700 0.79975 0.84630 0.84568 1.90708 1.37663 1.26256 1.86803 1.45931 1.54078 1.32330 1.05307 1.22043 0.99784 0.97199 0.84583 1.22229 0.99862 0.82737 0.91280 0.86696 1.86653 1.25258 1.27339 1.96558 1.22532 0.97691 0.98851 0.90934 1.59965 1.63868 1.06352 0.99535 1.21687 0.98098 0.98347 0.90101 1.19787 0.85912 0.87739 0.84031 1.90532 1.44834 1.25498 1.85732 1.41853 1.49550 1.24184 1.04411 1.19666 1.32486 1.07305 0.83576 0.87953 1.25257 0.97107 0.96387 0.99122 1.69603 1.40375 1.20055 1.24302 0.85912 0.79306 0.79138 0.79826 1.19910 1.20974 1.19873 1.21588 0.95900 0.99424 0.92110 1.22476 0.97968 1.00389 0.94891 1.22496 0.94802 1.01585 0.97386 1.22432 0.97808 1.00393 0.96050 1.22094 0.94508 1.00884 0.97067 0.91157 0.92003 0.92012 0.76003 0.90396 0.91204 0.77968 0.95023 0.89924 0.82313 0.93916 0.89617 0.77467 0.91819 0.90442 0.91387 0.91582 0.91578 0.91724 0.91916 0.91893 0.91498 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.88 37.16 0.33 -0.44 16 2 C -0.10 -0.69 2.01 -91.77 -0.18 -0.88 16 3 H 0.10 0.55 8.13 -51.93 -0.42 0.13 16 4 C 0.51 4.81 6.55 -10.98 -0.07 4.74 16 5 O -0.54 -6.92 14.71 5.56 0.08 -6.84 16 6 N -0.72 -5.78 5.40 -60.29 -0.33 -6.11 16 7 C 0.09 0.75 5.31 -4.04 -0.02 0.73 16 8 C 0.10 0.92 3.27 -26.73 -0.09 0.83 16 9 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 10 O -0.55 -5.43 12.62 -35.23 -0.44 -5.87 16 11 C 0.03 0.34 5.39 -3.82 -0.02 0.32 16 12 N -0.66 -10.43 6.12 -115.06 -0.70 -11.13 16 13 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 14 C 0.44 10.43 7.82 -10.99 -0.09 10.34 16 15 O -0.58 -15.94 15.78 5.55 0.09 -15.86 16 16 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 17 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 21 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.07 -0.51 2.12 -89.50 -0.19 -0.70 16 26 C -0.12 -0.65 5.30 -25.03 -0.13 -0.79 16 27 C -0.13 -0.70 6.91 -24.70 -0.17 -0.87 16 28 C -0.13 -0.83 6.83 -25.07 -0.17 -1.00 16 29 C -0.11 -0.88 5.10 -25.62 -0.13 -1.01 16 30 H 0.07 0.29 7.22 -51.93 -0.37 -0.08 16 31 H 0.06 0.29 7.56 -51.93 -0.39 -0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.40 2.67 7.89 -40.82 -0.32 2.35 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.37 2.60 9.05 45.56 0.41 3.01 16 37 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.36 5.97 7.82 -39.30 -0.31 5.66 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 45 H 0.07 0.33 7.72 -51.93 -0.40 -0.07 16 46 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.06 0.56 6.95 -51.93 -0.36 0.20 16 LS Contribution 418.52 15.07 6.31 6.31 Total: -1.00 -33.68 418.52 -8.91 -42.59 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -8.34 Total: 14.99 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.21 Total: 4.06 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.36 Total: -55.42 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.28 Total: -28.57 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.68 -8.91 -42.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268328888.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.891 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds