Wall clock time and date at job start Wed Apr 1 2020 01:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46921 * 2 1 4 4 C 1.50702 * 109.46945 * 239.99761 * 2 1 3 5 5 O 1.21281 * 120.00051 * 239.99842 * 4 2 1 6 6 N 1.34779 * 119.99840 * 60.00163 * 4 2 1 7 7 C 1.46494 * 119.99921 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47283 * 179.97438 * 7 6 4 9 9 H 1.08999 * 109.47269 * 305.00317 * 8 7 6 10 10 O 1.42903 * 109.46459 * 65.00211 * 8 7 6 11 11 C 1.53001 * 109.47376 * 185.00021 * 8 7 6 12 12 N 1.46898 * 109.46893 * 180.02562 * 11 8 7 13 13 C 1.46900 * 110.99589 * 180.02562 * 12 11 8 14 14 C 1.50705 * 109.47217 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99619 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00394 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00100 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99991 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99700 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00117 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99605 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47449 * 60.00044 * 21 19 17 23 23 H 1.48506 * 109.47113 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47294 * 300.00045 * 21 19 17 25 25 C 1.53000 * 109.47387 * 120.00175 * 2 1 3 26 26 C 1.54269 * 110.02870 * 297.90648 * 25 2 1 27 27 C 1.54961 * 104.16086 * 217.13340 * 26 25 2 28 28 C 1.54895 * 102.77531 * 37.89030 * 27 26 25 29 29 C 1.53867 * 110.03435 * 180.69125 * 25 2 1 30 30 H 1.09007 * 109.46886 * 299.99878 * 1 2 3 31 31 H 1.08999 * 109.47534 * 60.00018 * 1 2 3 32 32 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 33 33 H 0.96999 * 119.99691 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.47040 * 60.00167 * 7 6 4 35 35 H 1.08999 * 109.47079 * 299.99869 * 7 6 4 36 36 H 0.96700 * 114.00311 * 60.00313 * 10 8 7 37 37 H 1.08999 * 109.47164 * 300.00361 * 11 8 7 38 38 H 1.08997 * 109.47124 * 60.00063 * 11 8 7 39 39 H 1.00893 * 111.00468 * 56.04908 * 12 11 8 40 40 H 1.09002 * 109.47169 * 299.99734 * 13 12 11 41 41 H 1.09003 * 109.47314 * 59.99718 * 13 12 11 42 42 H 0.97006 * 119.99935 * 359.97438 * 16 14 13 43 43 H 0.97003 * 119.99893 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.01826 * 59.29238 * 25 2 1 45 45 H 1.09002 * 110.49087 * 335.78313 * 26 25 2 46 46 H 1.09008 * 110.48911 * 98.42693 * 26 25 2 47 47 H 1.09000 * 110.72403 * 279.57696 * 27 26 25 48 48 H 1.08998 * 110.92581 * 156.29298 * 27 26 25 49 49 H 1.08999 * 110.48635 * 203.40473 * 28 27 26 50 50 H 1.09000 * 110.59968 * 80.81569 * 28 27 26 51 51 H 1.09003 * 110.03464 * 238.56503 * 29 25 2 52 52 H 1.09001 * 110.03305 * 359.97438 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9403 -3.6507 8 6 1.6848 -0.2195 -4.9000 9 1 0.5984 -0.1420 -4.8563 10 8 2.2537 1.0900 -4.9602 11 6 2.0900 -1.0095 -6.1461 12 7 1.6002 -0.3170 -7.3455 13 6 1.9711 -1.0488 -8.5640 14 6 1.4524 -0.3104 -9.7710 15 8 0.8340 0.7235 -9.6299 16 7 1.6754 -0.7988 -11.0072 17 6 1.2039 -0.1267 -12.1051 18 1 0.6541 0.7943 -11.9795 19 6 1.4344 -0.6300 -13.3796 20 7 2.1047 -1.7498 -13.5325 21 14 0.7913 0.2854 -14.8756 22 1 1.3830 1.6468 -14.9151 23 1 1.1668 -0.4540 -16.1075 24 1 -0.6877 0.3907 -14.7935 25 6 2.0401 -0.7213 1.2492 26 6 1.5767 0.0258 2.5169 27 6 2.7747 -0.1019 3.4914 28 6 3.9976 0.0383 2.5511 29 6 3.5786 -0.7137 1.2710 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.1493 0.5389 -2.5435 34 1 1.8324 -1.9681 -3.6508 35 1 3.2854 -0.9399 -3.6506 36 1 3.2198 1.0976 -5.0012 37 1 3.1764 -1.0869 -6.1898 38 1 1.6561 -2.0083 -6.1001 39 1 1.9374 0.6334 -7.3774 40 1 3.0566 -1.1273 -8.6245 41 1 1.5357 -2.0477 -8.5348 42 1 2.1703 -1.6254 -11.1201 43 1 2.2653 -2.1014 -14.4222 44 1 1.6714 -1.7469 1.2645 45 1 1.3786 1.0737 2.2913 46 1 0.6899 -0.4491 2.9370 47 1 2.7726 -1.0764 3.9797 48 1 2.7622 0.6989 4.2307 49 1 4.8767 -0.4272 2.9966 50 1 4.1932 1.0877 2.3303 51 1 3.9567 -1.7357 1.2977 52 1 3.9619 -0.1966 0.3914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268328888.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:03 Heat of formation + Delta-G solvation = -178.892065 kcal Electronic energy + Delta-G solvation = -29101.715511 eV Core-core repulsion = 24905.569999 eV Total energy + Delta-G solvation = -4196.145512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.29692 -40.20937 -39.33158 -38.50997 -36.30536 -35.66289 -35.31496 -34.22336 -33.27133 -31.28416 -29.63192 -28.83176 -28.23974 -26.64858 -25.20159 -24.00499 -22.74716 -21.47510 -21.40462 -21.09287 -20.37686 -19.91448 -18.40231 -18.09953 -17.42518 -17.28076 -16.89846 -16.75039 -16.37214 -16.26478 -15.97664 -15.86215 -15.65706 -15.31448 -15.07698 -14.61452 -14.39569 -14.22511 -14.10500 -14.04780 -13.78696 -13.46727 -13.30991 -13.17040 -13.11657 -12.92905 -12.70561 -12.48454 -12.43555 -12.12392 -12.00899 -11.95226 -11.87434 -11.85930 -11.56510 -11.50522 -11.44757 -11.28624 -11.19755 -10.64980 -10.33249 -10.09516 -10.02168 -9.33931 -8.46882 -5.95878 1.40013 1.42025 1.52959 1.67009 2.04797 2.12487 2.30038 2.89896 3.20370 3.42193 3.49519 3.57045 3.70334 3.74552 3.87795 3.94702 4.03923 4.12082 4.21440 4.25555 4.30956 4.42689 4.47679 4.49853 4.55375 4.59733 4.68553 4.71607 4.74294 4.76347 4.83289 4.86396 4.92220 5.00356 5.08342 5.12519 5.16403 5.26325 5.29646 5.40256 5.41079 5.43417 5.49894 5.55813 5.85845 6.07906 6.39345 6.54914 6.59734 6.76414 7.12139 7.26736 7.55625 8.11119 8.70192 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.041572 B = 0.001388 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.373888 B =20168.503409 C =20404.147541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.113 0.887 4 C 0.511 3.489 5 O -0.578 6.578 6 N -0.716 5.716 7 C 0.097 3.903 8 C 0.114 3.886 9 H 0.107 0.893 10 O -0.566 6.566 11 C 0.031 3.969 12 N -0.679 5.679 13 C 0.065 3.935 14 C 0.436 3.564 15 O -0.623 6.623 16 N -0.572 5.572 17 C -0.337 4.337 18 H 0.079 0.921 19 C -0.011 4.011 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.271 1.271 23 H -0.270 1.270 24 H -0.272 1.272 25 C -0.071 4.071 26 C -0.114 4.114 27 C -0.124 4.124 28 C -0.127 4.127 29 C -0.108 4.108 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.413 0.587 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.386 0.614 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.349 0.651 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.044 0.956 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 1.622 32.619 32.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.131 0.869 4 C 0.299 3.701 5 O -0.458 6.458 6 N -0.368 5.368 7 C -0.028 4.028 8 C 0.054 3.946 9 H 0.125 0.875 10 O -0.372 6.372 11 C -0.099 4.099 12 N -0.313 5.313 13 C -0.068 4.068 14 C 0.223 3.777 15 O -0.510 6.510 16 N -0.210 5.210 17 C -0.467 4.467 18 H 0.097 0.903 19 C -0.211 4.211 20 N -0.561 5.561 21 Si 0.816 3.184 22 H -0.197 1.197 23 H -0.194 1.194 24 H -0.198 1.198 25 C -0.090 4.090 26 C -0.151 4.151 27 C -0.162 4.162 28 C -0.165 4.165 29 C -0.146 4.146 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.250 0.750 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.235 0.765 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.168 0.832 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.081 0.919 48 H 0.096 0.904 49 H 0.080 0.920 50 H 0.088 0.912 51 H 0.063 0.937 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.997 1.382 32.645 32.690 hybrid contribution 1.425 -0.102 -1.407 2.005 sum 2.421 1.281 31.238 31.358 Atomic orbital electron populations 1.21823 0.91448 1.02622 1.04157 1.21498 0.98496 1.00874 0.91096 0.86906 1.21223 0.79253 0.84168 0.85500 1.90692 1.39586 1.28152 1.87370 1.45885 1.53684 1.32343 1.04907 1.21903 0.99675 0.96862 0.84386 1.22000 0.99377 0.82434 0.90782 0.87483 1.86628 1.26582 1.27504 1.96519 1.22630 0.98801 0.98958 0.89461 1.59945 1.64853 1.06204 1.00264 1.21546 0.99253 0.98046 0.87922 1.20907 0.84405 0.87255 0.85111 1.90498 1.46447 1.27509 1.86545 1.41925 1.49973 1.24359 1.04715 1.19649 1.34151 1.07553 0.85309 0.90325 1.26031 0.96812 0.97061 1.01215 1.69663 1.40435 1.20694 1.25263 0.84991 0.78600 0.78075 0.76685 1.19657 1.19447 1.19752 1.21566 0.95067 0.98885 0.93517 1.22464 0.98119 1.00892 0.93664 1.22510 0.94248 1.01974 0.97452 1.22426 0.98316 1.00433 0.95320 1.22050 0.95412 0.99615 0.97482 0.89456 0.91135 0.93051 0.74983 0.90812 0.91237 0.76498 0.93227 0.89029 0.83194 0.91507 0.87753 0.76955 0.91276 0.92331 0.90060 0.90751 0.91887 0.90369 0.91978 0.91176 0.93730 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.88 71.98 0.64 -0.60 16 2 C -0.10 -1.19 2.01 -11.54 -0.02 -1.22 16 3 H 0.11 1.03 8.13 -2.39 -0.02 1.01 16 4 C 0.51 9.32 6.55 87.66 0.57 9.89 16 5 O -0.58 -15.21 14.71 -3.03 -0.04 -15.25 16 6 N -0.72 -10.67 5.40 -463.06 -2.50 -13.17 16 7 C 0.10 1.53 5.31 86.38 0.46 1.99 16 8 C 0.11 1.95 3.27 30.60 0.10 2.05 16 9 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 10 O -0.57 -10.27 12.62 -148.98 -1.88 -12.15 16 11 C 0.03 0.62 5.39 86.30 0.47 1.09 16 12 N -0.68 -20.49 6.12 -517.93 -3.17 -23.66 16 13 C 0.06 2.16 6.17 85.56 0.53 2.69 16 14 C 0.44 20.75 7.82 87.66 0.69 21.43 16 15 O -0.62 -34.83 15.78 -3.07 -0.05 -34.88 16 16 N -0.57 -29.41 5.29 -306.98 -1.62 -31.04 16 17 C -0.34 -19.23 9.68 84.04 0.81 -18.42 16 18 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 19 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 20 N -0.92 -49.57 13.05 21.66 0.28 -49.28 16 21 Si 0.99 42.90 29.55 68.60 2.03 44.92 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C -0.07 -0.99 2.12 -10.07 -0.02 -1.01 16 26 C -0.11 -1.03 5.30 31.70 0.17 -0.86 16 27 C -0.12 -1.20 6.91 31.91 0.22 -0.98 16 28 C -0.13 -1.55 6.83 31.67 0.22 -1.33 16 29 C -0.11 -1.80 5.10 31.32 0.16 -1.64 16 30 H 0.09 0.49 7.22 -2.38 -0.02 0.47 16 31 H 0.07 0.50 7.56 -2.39 -0.02 0.48 16 32 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.41 4.80 7.89 -92.71 -0.73 4.07 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.39 4.74 9.05 -74.06 -0.67 4.07 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.35 11.42 7.82 -89.70 -0.70 10.71 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 41 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.40 19.27 7.90 -92.70 -0.73 18.54 16 43 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 44 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 45 H 0.08 0.55 7.72 -2.39 -0.02 0.53 16 46 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 47 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.05 0.89 6.95 -2.39 -0.02 0.87 16 Total: -1.00 -73.89 418.52 -3.39 -77.28 By element: Atomic # 1 Polarization: 46.16 SS G_CDS: -1.89 Total: 44.28 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.45 Total: 12.95 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -7.01 Total: -117.14 kcal Atomic # 8 Polarization: -60.31 SS G_CDS: -1.97 Total: -62.28 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -73.89 -3.39 -77.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268328888.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.611 kcal (2) G-P(sol) polarization free energy of solvation -73.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds