Wall clock time and date at job start Wed Apr 1 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47669 * 2 1 4 4 C 1.50704 * 109.47114 * 120.00300 * 2 1 3 5 5 O 1.21276 * 120.00499 * 119.99677 * 4 2 1 6 6 N 1.34783 * 119.99567 * 299.99827 * 4 2 1 7 7 C 1.46497 * 119.99638 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46900 * 180.02562 * 7 6 4 9 9 H 1.08999 * 109.47164 * 60.00014 * 8 7 6 10 10 O 1.42903 * 109.47171 * 299.99748 * 8 7 6 11 11 C 1.53003 * 109.47376 * 180.02562 * 8 7 6 12 12 N 1.46900 * 109.47407 * 184.99739 * 11 8 7 13 13 C 1.46902 * 110.99888 * 179.97438 * 12 11 8 14 14 C 1.50696 * 109.46722 * 180.02562 * 13 12 11 15 15 O 1.21298 * 120.00202 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99889 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99834 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00344 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99671 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99942 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99837 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47134 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47325 * 119.99991 * 21 19 17 24 24 H 1.48497 * 109.47073 * 239.99676 * 21 19 17 25 25 C 1.53006 * 109.47109 * 239.99607 * 2 1 3 26 26 C 1.54270 * 110.03240 * 177.16987 * 25 2 1 27 27 C 1.54888 * 104.19413 * 217.10952 * 26 25 2 28 28 C 1.54886 * 102.75250 * 37.94207 * 27 26 25 29 29 C 1.53871 * 110.02930 * 60.00605 * 25 2 1 30 30 H 1.08997 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47096 * 300.00223 * 1 2 3 32 32 H 1.08997 * 109.46665 * 59.99897 * 1 2 3 33 33 H 0.96996 * 120.00052 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.47200 * 60.00094 * 7 6 4 35 35 H 1.08997 * 109.47487 * 300.00148 * 7 6 4 36 36 H 0.96700 * 114.00311 * 300.00378 * 10 8 7 37 37 H 1.09005 * 109.46682 * 304.99749 * 11 8 7 38 38 H 1.08999 * 109.47221 * 64.99915 * 11 8 7 39 39 H 1.00897 * 111.00248 * 303.95482 * 12 11 8 40 40 H 1.08994 * 109.47353 * 299.99985 * 13 12 11 41 41 H 1.08992 * 109.46815 * 60.00343 * 13 12 11 42 42 H 0.96995 * 119.99740 * 0.02562 * 16 14 13 43 43 H 0.96999 * 119.99954 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.01888 * 298.61215 * 25 2 1 45 45 H 1.09008 * 110.48473 * 335.78527 * 26 25 2 46 46 H 1.08995 * 110.48697 * 98.42884 * 26 25 2 47 47 H 1.09001 * 110.75443 * 279.62529 * 27 26 25 48 48 H 1.09001 * 110.91195 * 156.33112 * 27 26 25 49 49 H 1.09000 * 110.48805 * 203.38119 * 28 27 26 50 50 H 1.09002 * 110.59916 * 80.78775 * 28 27 26 51 51 H 1.08999 * 110.03336 * 238.56723 * 29 25 2 52 52 H 1.09008 * 110.03381 * 359.94869 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1945 -0.9409 3.6507 8 6 1.6841 -0.2200 4.9000 9 1 0.5941 -0.2199 4.8995 10 8 2.1606 1.1273 4.9005 11 6 2.1941 -0.9412 6.1493 12 7 1.6080 -0.3222 7.3456 13 6 2.0759 -0.9908 8.5671 14 6 1.4545 -0.3302 9.7707 15 8 0.6968 0.6058 9.6252 16 7 1.7414 -0.7788 11.0088 17 6 1.1756 -0.1782 12.1037 18 1 0.5004 0.6546 11.9742 19 6 1.4719 -0.6404 13.3802 20 7 2.2940 -1.6535 13.5379 21 14 0.7016 0.1784 14.8721 22 1 -0.1809 1.2869 14.4279 23 1 -0.0992 -0.8194 15.6261 24 1 1.7722 0.7180 15.7484 25 6 2.0400 -0.7214 -1.2492 26 6 3.5810 -0.6672 -1.2986 27 6 3.9069 -0.4940 -2.8029 28 6 2.7856 0.4578 -3.2883 29 6 1.5343 -0.0060 -2.5142 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.1488 0.5384 2.5436 34 1 3.2845 -0.9414 3.6509 35 1 1.8308 -1.9684 3.6506 36 1 3.1246 1.2036 4.9009 37 1 1.9060 -1.9916 6.1054 38 1 3.2804 -0.8640 6.1954 39 1 1.8068 0.6666 7.3754 40 1 1.7866 -2.0413 8.5399 41 1 3.1613 -0.9142 8.6302 42 1 2.3482 -1.5266 11.1252 43 1 2.5011 -1.9759 14.4290 44 1 1.7020 -1.7576 -1.2459 45 1 3.9513 0.1842 -0.7275 46 1 4.0076 -1.5961 -0.9203 47 1 3.8532 -1.4508 -3.3224 48 1 4.8871 -0.0370 -2.9385 49 1 2.6317 0.3499 -4.3620 50 1 3.0260 1.4916 -3.0402 51 1 0.9516 -0.6953 -3.1253 52 1 0.9248 0.8545 -2.2382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268328889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:06 Heat of formation + Delta-G solvation = -178.459998 kcal Electronic energy + Delta-G solvation = -29093.171301 eV Core-core repulsion = 24897.044525 eV Total energy + Delta-G solvation = -4196.126776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27548 -40.21004 -39.33735 -38.52330 -36.31748 -35.66854 -35.29965 -34.22528 -33.27336 -31.28890 -29.63486 -28.82589 -28.21075 -26.65327 -25.23538 -24.03124 -22.75279 -21.50734 -21.36593 -21.08522 -20.20897 -19.91750 -18.53652 -18.17117 -17.42053 -17.30148 -16.90797 -16.70902 -16.39598 -16.18552 -16.07432 -15.86621 -15.59817 -15.27855 -15.02677 -14.53542 -14.38327 -14.20247 -14.17239 -14.02733 -13.92121 -13.49292 -13.35964 -13.17582 -13.13699 -12.94329 -12.70805 -12.41135 -12.39110 -12.11518 -12.06429 -11.96337 -11.84131 -11.80322 -11.53960 -11.52029 -11.46144 -11.25916 -11.18841 -10.64879 -10.33721 -10.08845 -10.02166 -9.34843 -8.47464 -5.96270 1.36499 1.42028 1.56272 1.67653 2.04285 2.12570 2.29802 2.90279 3.19888 3.42949 3.48645 3.58893 3.70544 3.74116 3.87233 3.93919 4.03466 4.13718 4.23850 4.25222 4.30889 4.42733 4.47954 4.50517 4.55488 4.59031 4.68327 4.70160 4.75043 4.76481 4.82394 4.88031 4.90704 5.04212 5.08755 5.11562 5.14963 5.25920 5.31153 5.38934 5.40716 5.46134 5.51209 5.56748 5.85847 6.07907 6.38728 6.55843 6.59388 6.76465 7.12092 7.27630 7.55384 8.10811 8.70122 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.041293 B = 0.001389 C = 0.001369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.913401 B =20159.865635 C =20453.977614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.113 0.887 4 C 0.511 3.489 5 O -0.578 6.578 6 N -0.715 5.715 7 C 0.097 3.903 8 C 0.114 3.886 9 H 0.106 0.894 10 O -0.565 6.565 11 C 0.032 3.968 12 N -0.680 5.680 13 C 0.065 3.935 14 C 0.436 3.564 15 O -0.623 6.623 16 N -0.573 5.573 17 C -0.335 4.335 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.270 1.270 25 C -0.071 4.071 26 C -0.113 4.113 27 C -0.128 4.128 28 C -0.123 4.123 29 C -0.118 4.118 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.414 0.586 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.386 0.614 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.348 0.652 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.047 0.953 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.067 0.933 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 2.080 -32.591 32.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.131 0.869 4 C 0.299 3.701 5 O -0.458 6.458 6 N -0.368 5.368 7 C -0.028 4.028 8 C 0.054 3.946 9 H 0.124 0.876 10 O -0.372 6.372 11 C -0.098 4.098 12 N -0.313 5.313 13 C -0.068 4.068 14 C 0.224 3.776 15 O -0.510 6.510 16 N -0.210 5.210 17 C -0.464 4.464 18 H 0.097 0.903 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.817 3.183 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.090 4.090 26 C -0.150 4.150 27 C -0.165 4.165 28 C -0.160 4.160 29 C -0.156 4.156 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.250 0.750 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.236 0.764 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.168 0.832 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.086 0.914 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.297 1.664 -32.608 32.676 hybrid contribution 1.372 0.069 1.372 1.941 sum 2.669 1.733 -31.236 31.398 Atomic orbital electron populations 1.21864 0.91544 1.02640 1.04168 1.21492 0.98415 1.00891 0.91166 0.86878 1.21206 0.79265 0.84153 0.85475 1.90681 1.39604 1.28137 1.87355 1.45865 1.53688 1.32368 1.04865 1.21885 0.99736 0.96825 0.84388 1.21995 1.00128 0.81703 0.90795 0.87585 1.86622 1.28119 1.25764 1.96730 1.22639 0.97589 1.00128 0.89453 1.59972 1.62789 1.08213 1.00323 1.21542 0.97906 0.99413 0.87901 1.20913 0.85354 0.86293 0.85085 1.90499 1.41271 1.32746 1.86478 1.41937 1.42539 1.31821 1.04727 1.19718 1.26097 1.15303 0.85331 0.90346 1.26035 0.97090 0.96864 1.01181 1.69676 1.35447 1.25981 1.25008 0.84869 0.78130 0.78106 0.77221 1.19793 1.19622 1.19546 1.21552 0.95268 0.98836 0.93358 1.22326 0.95383 1.00779 0.96534 1.22535 0.99052 0.99782 0.95179 1.22368 0.94475 0.99223 0.99978 1.22273 0.97912 1.00514 0.94884 0.93078 0.91126 0.89361 0.74955 0.91151 0.90908 0.76441 0.89072 0.93136 0.83245 0.87738 0.91479 0.76952 0.91291 0.92386 0.92498 0.93388 0.91897 0.91412 0.90984 0.91137 0.91377 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.83 71.98 0.64 -0.64 16 2 C -0.10 -1.19 2.02 -11.54 -0.02 -1.21 16 3 H 0.11 1.03 8.12 -2.39 -0.02 1.01 16 4 C 0.51 9.30 6.90 87.66 0.61 9.90 16 5 O -0.58 -15.15 14.54 -3.02 -0.04 -15.19 16 6 N -0.72 -10.63 5.34 -463.06 -2.47 -13.10 16 7 C 0.10 1.53 5.34 86.38 0.46 1.99 16 8 C 0.11 1.94 3.29 30.60 0.10 2.04 16 9 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 10 O -0.57 -9.95 12.60 -148.98 -1.88 -11.83 16 11 C 0.03 0.63 5.36 86.30 0.46 1.09 16 12 N -0.68 -20.49 6.12 -517.94 -3.17 -23.66 16 13 C 0.06 2.16 6.17 85.56 0.53 2.69 16 14 C 0.44 20.75 7.82 87.66 0.69 21.44 16 15 O -0.62 -34.84 15.78 -3.08 -0.05 -34.89 16 16 N -0.57 -29.43 5.29 -306.97 -1.62 -31.05 16 17 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 20 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 21 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 C -0.07 -0.99 2.11 -10.07 -0.02 -1.01 16 26 C -0.11 -1.83 5.18 31.67 0.16 -1.66 16 27 C -0.13 -1.59 6.91 31.88 0.22 -1.37 16 28 C -0.12 -1.14 6.83 31.67 0.22 -0.93 16 29 C -0.12 -1.10 5.91 31.32 0.19 -0.92 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.51 7.56 -2.39 -0.02 0.49 16 32 H 0.09 0.50 6.47 -2.39 -0.02 0.48 16 33 H 0.41 4.83 7.76 -92.71 -0.72 4.11 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.39 4.49 9.05 -74.06 -0.67 3.82 16 37 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.35 11.42 7.99 -89.70 -0.72 10.71 16 40 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.40 19.26 7.90 -92.71 -0.73 18.52 16 43 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 44 H 0.06 1.04 8.08 -2.39 -0.02 1.02 16 45 H 0.06 0.93 7.84 -2.38 -0.02 0.91 16 46 H 0.05 1.03 7.45 -2.39 -0.02 1.01 16 47 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.08 0.54 6.33 -2.38 -0.02 0.52 16 Total: -1.00 -73.73 417.31 -3.31 -77.05 By element: Atomic # 1 Polarization: 45.94 SS G_CDS: -1.89 Total: 44.06 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 5.50 Total: 12.94 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -6.99 Total: -117.11 kcal Atomic # 8 Polarization: -59.93 SS G_CDS: -1.97 Total: -61.90 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -73.73 -3.31 -77.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268328889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.414 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds