Wall clock time and date at job start Wed Apr 1 2020 00:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47248 * 2 1 4 4 O 1.42906 * 109.47226 * 179.97438 * 3 2 1 5 5 C 1.42895 * 114.00158 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47398 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99852 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00539 * 180.02562 * 6 5 4 9 9 C 1.46929 * 120.62558 * 5.04138 * 8 6 5 10 10 C 1.53192 * 108.77243 * 126.41657 * 9 8 6 11 11 C 1.53048 * 109.31412 * 54.63503 * 10 9 8 12 12 H 1.09006 * 109.44625 * 58.64627 * 11 10 9 13 13 N 1.46894 * 109.45999 * 178.61519 * 11 10 9 14 14 C 1.46904 * 110.99838 * 275.06552 * 13 11 10 15 15 C 1.50707 * 109.47048 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99994 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99889 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99756 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00516 * 359.97438 * 18 17 15 20 20 C 1.38957 * 119.99644 * 180.27449 * 18 17 15 21 21 N 1.31408 * 119.99984 * 359.72000 * 20 18 17 22 22 Si 1.86805 * 119.99682 * 179.72353 * 20 18 17 23 23 H 1.48501 * 109.47044 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46822 * 119.99795 * 22 20 18 25 25 H 1.48497 * 109.47201 * 239.99806 * 22 20 18 26 26 C 1.53039 * 109.53438 * 298.63611 * 11 10 9 27 27 C 1.46922 * 120.63198 * 185.07043 * 8 6 5 28 28 H 1.09004 * 109.70607 * 113.72854 * 27 8 6 29 29 C 1.52997 * 109.58816 * 353.36912 * 27 8 6 30 30 H 1.09000 * 109.47111 * 59.99865 * 1 2 3 31 31 H 1.09001 * 109.47419 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47241 * 299.99751 * 1 2 3 33 33 H 1.09004 * 109.47219 * 239.99490 * 2 1 3 34 34 H 1.09010 * 109.47073 * 120.00146 * 2 1 3 35 35 H 1.09001 * 109.47422 * 60.00395 * 3 2 1 36 36 H 1.08999 * 109.47352 * 299.99572 * 3 2 1 37 37 H 1.09005 * 109.47401 * 59.99878 * 5 4 3 38 38 H 1.08998 * 109.47349 * 300.00202 * 5 4 3 39 39 H 1.08997 * 109.58819 * 246.20103 * 9 8 6 40 40 H 1.09001 * 109.58916 * 6.62998 * 9 8 6 41 41 H 1.09000 * 109.50113 * 294.68323 * 10 9 8 42 42 H 1.08997 * 109.49870 * 174.58480 * 10 9 8 43 43 H 1.00907 * 111.00177 * 151.11730 * 13 11 10 44 44 H 1.09000 * 109.46838 * 60.00320 * 14 13 11 45 45 H 1.09001 * 109.46995 * 300.00024 * 14 13 11 46 46 H 0.96998 * 119.99967 * 359.97438 * 17 15 14 47 47 H 0.97000 * 119.99940 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.49442 * 181.31535 * 26 11 10 49 49 H 1.08999 * 109.50267 * 301.40819 * 26 11 10 50 50 H 1.08994 * 109.47275 * 304.33263 * 29 27 8 51 51 H 1.08999 * 109.46913 * 64.33257 * 29 27 8 52 52 H 1.09002 * 109.47378 * 184.33341 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0503 2.7478 0.0001 6 6 5.5526 2.6288 0.0001 7 8 6.0742 1.5338 0.0011 8 7 6.3166 3.7391 0.0002 9 6 5.7033 5.0697 0.1113 10 6 6.3620 5.8206 1.2728 11 6 7.8783 5.8426 1.0663 12 1 8.1083 6.3253 0.1164 13 7 8.5105 6.5906 2.1612 14 6 8.5132 8.0326 1.8807 15 6 9.1687 8.7653 3.0230 16 8 9.5915 8.1471 3.9770 17 7 9.2841 10.1075 2.9849 18 6 9.8799 10.7741 4.0242 19 1 10.2564 10.2237 4.8737 20 6 9.9938 12.1585 3.9875 21 7 9.5353 12.8283 2.9541 22 14 10.7987 13.0673 5.4073 23 1 11.2283 12.0907 6.4402 24 1 11.9822 13.8137 4.9097 25 1 9.8260 14.0200 6.0001 26 6 8.4137 4.4090 1.0525 27 6 7.7783 3.6420 -0.1115 28 1 8.1044 4.0763 -1.0566 29 6 8.2010 2.1729 -0.0492 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7283 3.2893 0.8896 38 1 3.7290 3.2882 -0.8903 39 1 5.8582 5.6220 -0.8155 40 1 4.6354 4.9651 0.3027 41 1 6.1298 5.3160 2.2106 42 1 5.9846 6.8426 1.3059 43 1 9.4458 6.2545 2.3360 44 1 7.4873 8.3822 1.7654 45 1 9.0675 8.2230 0.9617 46 1 8.9456 10.6019 2.2221 47 1 9.6145 13.7947 2.9286 48 1 9.4966 4.4262 0.9288 49 1 8.1623 3.9176 1.9924 50 1 7.8145 1.7220 0.8648 51 1 7.8006 1.6427 -0.9133 52 1 9.2890 2.1072 -0.0547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269917770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:01 Heat of formation + Delta-G solvation = -109.785960 kcal Electronic energy + Delta-G solvation = -29810.824370 eV Core-core repulsion = 25617.675524 eV Total energy + Delta-G solvation = -4193.148846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.83878 -38.75101 -38.22733 -37.46825 -35.14931 -34.18302 -33.88244 -33.16025 -31.40856 -31.06111 -28.82104 -27.63789 -26.23992 -25.95728 -24.38083 -23.66953 -22.19894 -21.96176 -20.66319 -19.45416 -19.11027 -17.90370 -17.44124 -16.94470 -16.84601 -16.27009 -15.97090 -15.60027 -15.34118 -15.01040 -14.94036 -14.53616 -14.49047 -14.04136 -13.90582 -13.78041 -13.60970 -13.37353 -13.07131 -12.66369 -12.57200 -12.44628 -12.39714 -12.29907 -12.18645 -12.04675 -11.82296 -11.61191 -11.41690 -11.35083 -11.30196 -11.22901 -11.09847 -10.86623 -10.56926 -10.35814 -10.24206 -10.08345 -9.53980 -9.20956 -8.83889 -8.47670 -8.10660 -7.98067 -6.43928 -3.84631 2.35156 2.39019 3.14886 3.25675 3.33023 3.40735 3.88341 4.01409 4.19697 4.25815 4.46652 4.51394 4.57753 4.64242 4.73415 4.79397 4.80252 4.88368 4.93354 5.01929 5.03829 5.05334 5.10124 5.20634 5.22209 5.28626 5.30541 5.38362 5.39110 5.56691 5.59218 5.69690 5.70653 5.75637 5.78566 5.82548 5.92118 5.94684 6.06452 6.17398 6.18005 6.28907 6.48974 6.68665 7.13872 7.20768 7.53572 7.62786 7.97176 8.04656 8.59176 9.16130 9.52229 10.03685 10.73857 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.001716 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.992879 B =16309.348809 C =17153.821564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.060 3.940 4 O -0.365 6.365 5 C 0.043 3.957 6 C 0.517 3.483 7 O -0.512 6.512 8 N -0.607 5.607 9 C 0.106 3.894 10 C -0.125 4.125 11 C 0.088 3.912 12 H 0.044 0.956 13 N -0.665 5.665 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.133 4.133 27 C 0.150 3.850 28 H 0.072 0.928 29 C -0.137 4.137 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.351 0.649 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.073 0.927 51 H 0.070 0.930 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.138 -18.653 -12.227 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.037 4.037 6 C 0.304 3.696 7 O -0.387 6.387 8 N -0.344 5.344 9 C -0.018 4.018 10 C -0.164 4.164 11 C -0.022 4.022 12 H 0.062 0.938 13 N -0.297 5.297 14 C -0.081 4.081 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.172 4.172 27 C 0.047 3.953 28 H 0.090 0.910 29 C -0.194 4.194 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.172 0.828 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.089 0.911 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.020 -19.606 -11.224 27.129 hybrid contribution 0.604 1.559 -0.488 1.742 sum -14.416 -18.047 -11.712 25.898 Atomic orbital electron populations 1.21699 0.94630 1.02351 1.02034 1.21446 0.95628 0.95368 1.03658 1.22642 0.80449 0.98333 1.00289 1.87994 1.19586 1.25308 1.95425 1.22302 0.92187 0.86841 1.02386 1.20160 0.88379 0.84316 0.76759 1.90789 1.73199 1.26856 1.47876 1.48112 1.06955 1.05970 1.73324 1.21860 0.97574 0.82784 0.99545 1.21953 0.95156 1.00976 0.98284 1.21473 0.94523 0.93232 0.92968 0.93835 1.60084 1.26845 1.02019 1.40791 1.21720 1.01137 0.88768 0.96513 1.19824 0.85505 0.83089 0.89027 1.90530 1.53353 1.66997 1.35784 1.41869 1.52628 1.04850 1.20728 1.19762 1.34079 0.89486 0.99549 0.87865 1.25260 0.97805 0.96628 0.98232 1.69617 1.46623 1.08423 1.29668 0.85803 0.78598 0.79231 0.80738 1.19206 1.20771 1.20740 1.22216 1.00342 0.95113 0.99512 1.21282 0.78131 0.97897 0.98002 0.90956 1.22216 0.99083 0.93272 1.04810 0.92524 0.91933 0.92462 0.91014 0.90938 0.93089 0.93187 0.90287 0.90434 0.90932 0.89800 0.90473 0.90254 0.82845 0.89705 0.93914 0.77495 0.91933 0.90546 0.90244 0.90827 0.91106 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.12 -0.82 6.30 -26.74 -0.17 -0.99 16 3 C 0.06 0.43 5.94 37.15 0.22 0.65 16 4 O -0.36 -3.87 9.88 -55.14 -0.54 -4.42 16 5 C 0.04 0.36 4.82 36.01 0.17 0.53 16 6 C 0.52 5.79 7.68 -10.99 -0.08 5.71 16 7 O -0.51 -7.51 11.90 -14.36 -0.17 -7.68 16 8 N -0.61 -5.85 2.97 -165.22 -0.49 -6.34 16 9 C 0.11 0.79 6.33 -3.71 -0.02 0.76 16 10 C -0.12 -1.24 5.59 -26.61 -0.15 -1.39 16 11 C 0.09 1.00 2.46 -67.67 -0.17 0.84 16 12 H 0.04 0.47 7.80 -51.93 -0.40 0.07 16 13 N -0.66 -10.21 5.93 -107.94 -0.64 -10.85 16 14 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 15 C 0.44 10.21 7.82 -10.98 -0.09 10.12 16 16 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 17 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 22 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.13 -1.41 4.65 -26.61 -0.12 -1.54 16 27 C 0.15 1.50 3.49 -67.60 -0.24 1.26 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 C -0.14 -1.52 7.59 37.16 0.28 -1.24 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.53 7.48 -51.93 -0.39 0.14 16 38 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.45 5.96 -51.93 -0.31 0.14 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.78 7.42 -51.93 -0.39 0.39 16 43 H 0.35 5.68 8.03 -39.29 -0.32 5.36 16 44 H 0.08 1.30 7.41 -51.93 -0.38 0.92 16 45 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 46 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 47 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 49 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.07 0.97 6.73 -51.93 -0.35 0.62 16 51 H 0.07 0.87 6.77 -51.93 -0.35 0.52 16 52 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 412.33 15.07 6.21 6.21 Total: -1.00 -33.65 412.33 -9.22 -42.87 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -9.06 Total: 10.36 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.26 Total: 7.28 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.47 Total: -54.87 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.63 Total: -27.72 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.65 -9.22 -42.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269917770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.915 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds