Wall clock time and date at job start Wed Apr 1 2020 00:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47248 * 2 1 4 4 O 1.42906 * 109.47226 * 179.97438 * 3 2 1 5 5 C 1.42895 * 114.00158 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47398 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99852 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00539 * 180.02562 * 6 5 4 9 9 C 1.46929 * 120.62558 * 5.04138 * 8 6 5 10 10 C 1.53192 * 108.77243 * 126.41657 * 9 8 6 11 11 C 1.53048 * 109.31412 * 54.63503 * 10 9 8 12 12 H 1.09006 * 109.44625 * 58.64627 * 11 10 9 13 13 N 1.46894 * 109.45999 * 178.61519 * 11 10 9 14 14 C 1.46904 * 110.99838 * 275.06552 * 13 11 10 15 15 C 1.50707 * 109.47048 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99994 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99889 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99756 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00516 * 359.97438 * 18 17 15 20 20 C 1.38957 * 119.99644 * 180.27449 * 18 17 15 21 21 N 1.31408 * 119.99984 * 359.72000 * 20 18 17 22 22 Si 1.86805 * 119.99682 * 179.72353 * 20 18 17 23 23 H 1.48501 * 109.47044 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46822 * 119.99795 * 22 20 18 25 25 H 1.48497 * 109.47201 * 239.99806 * 22 20 18 26 26 C 1.53039 * 109.53438 * 298.63611 * 11 10 9 27 27 C 1.46922 * 120.63198 * 185.07043 * 8 6 5 28 28 H 1.09004 * 109.70607 * 113.72854 * 27 8 6 29 29 C 1.52997 * 109.58816 * 353.36912 * 27 8 6 30 30 H 1.09000 * 109.47111 * 59.99865 * 1 2 3 31 31 H 1.09001 * 109.47419 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47241 * 299.99751 * 1 2 3 33 33 H 1.09004 * 109.47219 * 239.99490 * 2 1 3 34 34 H 1.09010 * 109.47073 * 120.00146 * 2 1 3 35 35 H 1.09001 * 109.47422 * 60.00395 * 3 2 1 36 36 H 1.08999 * 109.47352 * 299.99572 * 3 2 1 37 37 H 1.09005 * 109.47401 * 59.99878 * 5 4 3 38 38 H 1.08998 * 109.47349 * 300.00202 * 5 4 3 39 39 H 1.08997 * 109.58819 * 246.20103 * 9 8 6 40 40 H 1.09001 * 109.58916 * 6.62998 * 9 8 6 41 41 H 1.09000 * 109.50113 * 294.68323 * 10 9 8 42 42 H 1.08997 * 109.49870 * 174.58480 * 10 9 8 43 43 H 1.00907 * 111.00177 * 151.11730 * 13 11 10 44 44 H 1.09000 * 109.46838 * 60.00320 * 14 13 11 45 45 H 1.09001 * 109.46995 * 300.00024 * 14 13 11 46 46 H 0.96998 * 119.99967 * 359.97438 * 17 15 14 47 47 H 0.97000 * 119.99940 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.49442 * 181.31535 * 26 11 10 49 49 H 1.08999 * 109.50267 * 301.40819 * 26 11 10 50 50 H 1.08994 * 109.47275 * 304.33263 * 29 27 8 51 51 H 1.08999 * 109.46913 * 64.33257 * 29 27 8 52 52 H 1.09002 * 109.47378 * 184.33341 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0503 2.7478 0.0001 6 6 5.5526 2.6288 0.0001 7 8 6.0742 1.5338 0.0011 8 7 6.3166 3.7391 0.0002 9 6 5.7033 5.0697 0.1113 10 6 6.3620 5.8206 1.2728 11 6 7.8783 5.8426 1.0663 12 1 8.1083 6.3253 0.1164 13 7 8.5105 6.5906 2.1612 14 6 8.5132 8.0326 1.8807 15 6 9.1687 8.7653 3.0230 16 8 9.5915 8.1471 3.9770 17 7 9.2841 10.1075 2.9849 18 6 9.8799 10.7741 4.0242 19 1 10.2564 10.2237 4.8737 20 6 9.9938 12.1585 3.9875 21 7 9.5353 12.8283 2.9541 22 14 10.7987 13.0673 5.4073 23 1 11.2283 12.0907 6.4402 24 1 11.9822 13.8137 4.9097 25 1 9.8260 14.0200 6.0001 26 6 8.4137 4.4090 1.0525 27 6 7.7783 3.6420 -0.1115 28 1 8.1044 4.0763 -1.0566 29 6 8.2010 2.1729 -0.0492 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7283 3.2893 0.8896 38 1 3.7290 3.2882 -0.8903 39 1 5.8582 5.6220 -0.8155 40 1 4.6354 4.9651 0.3027 41 1 6.1298 5.3160 2.2106 42 1 5.9846 6.8426 1.3059 43 1 9.4458 6.2545 2.3360 44 1 7.4873 8.3822 1.7654 45 1 9.0675 8.2230 0.9617 46 1 8.9456 10.6019 2.2221 47 1 9.6145 13.7947 2.9286 48 1 9.4966 4.4262 0.9288 49 1 8.1623 3.9176 1.9924 50 1 7.8145 1.7220 0.8648 51 1 7.8006 1.6427 -0.9133 52 1 9.2890 2.1072 -0.0547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269917770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:00 Heat of formation + Delta-G solvation = -133.608101 kcal Electronic energy + Delta-G solvation = -29811.857376 eV Core-core repulsion = 25617.675524 eV Total energy + Delta-G solvation = -4194.181852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.64855 -40.19328 -39.25505 -38.42171 -36.35129 -35.75503 -34.72401 -33.91956 -33.27619 -32.23880 -29.61943 -28.52115 -27.67686 -26.52015 -25.84246 -24.67538 -23.03258 -22.47587 -21.55627 -21.07925 -20.09395 -19.85894 -18.15340 -17.82589 -17.60522 -17.52976 -16.87297 -16.72912 -16.47785 -16.26680 -16.02565 -15.68218 -15.49616 -15.37778 -15.09102 -14.79405 -14.60330 -14.24697 -14.00899 -13.82250 -13.52970 -13.48921 -13.33279 -13.24106 -13.02136 -12.96488 -12.90013 -12.81701 -12.65194 -12.56875 -12.39654 -12.11616 -12.05897 -11.83993 -11.78647 -11.72673 -11.50778 -11.43922 -10.66880 -10.33108 -10.07521 -10.00511 -9.63489 -9.30866 -8.46505 -5.94839 1.36816 1.42510 1.55448 1.56307 1.69526 2.06518 2.29541 2.80536 2.90018 3.21166 3.45694 3.53524 3.76636 3.80262 4.00328 4.03485 4.09326 4.16281 4.21005 4.25342 4.26806 4.31110 4.42089 4.45956 4.47882 4.53480 4.53942 4.57277 4.61149 4.64972 4.72857 4.77603 4.85187 4.89073 4.98738 5.03368 5.16342 5.20477 5.23341 5.32591 5.36659 5.38362 5.42150 5.64014 5.92588 6.10681 6.15194 6.40414 6.40958 6.61277 7.13780 7.17958 7.57555 8.13351 8.70959 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.001716 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.992879 B =16309.348809 C =17153.821564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.056 3.944 4 O -0.401 6.401 5 C 0.044 3.956 6 C 0.507 3.493 7 O -0.558 6.558 8 N -0.605 5.605 9 C 0.108 3.892 10 C -0.123 4.123 11 C 0.090 3.910 12 H 0.062 0.938 13 N -0.681 5.681 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.125 4.125 27 C 0.151 3.849 28 H 0.092 0.908 29 C -0.127 4.127 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.343 0.657 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.081 0.919 49 H 0.057 0.943 50 H 0.046 0.954 51 H 0.057 0.943 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.605 -17.311 -13.727 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C -0.020 4.020 4 O -0.320 6.320 5 C -0.036 4.036 6 C 0.296 3.704 7 O -0.436 6.436 8 N -0.340 5.340 9 C -0.014 4.014 10 C -0.162 4.162 11 C -0.020 4.020 12 H 0.080 0.920 13 N -0.314 5.314 14 C -0.064 4.064 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.164 4.164 27 C 0.048 3.952 28 H 0.110 0.890 29 C -0.184 4.184 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.163 0.837 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.076 0.924 50 H 0.065 0.935 51 H 0.075 0.925 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.521 -18.234 -12.757 27.716 hybrid contribution 1.064 1.088 -0.015 1.522 sum -15.457 -17.146 -12.773 26.383 Atomic orbital electron populations 1.21669 0.92995 1.02842 1.02712 1.21476 0.97013 0.95293 1.02544 1.22814 0.78923 0.98638 1.01642 1.87957 1.21459 1.26831 1.95743 1.22423 0.89899 0.86565 1.04671 1.20783 0.89808 0.83926 0.75869 1.90777 1.74263 1.28560 1.50031 1.48207 1.06720 1.06654 1.72437 1.22044 0.98624 0.81285 0.99464 1.21935 0.94162 1.01528 0.98546 1.21588 0.95170 0.92825 0.92386 0.91964 1.60120 1.26646 1.01476 1.43109 1.21576 1.01771 0.88921 0.94167 1.20974 0.84119 0.82571 0.89961 1.90500 1.54906 1.67763 1.38069 1.41925 1.52996 1.05661 1.20415 1.19689 1.36175 0.90360 1.00184 0.90521 1.25992 0.97796 0.96733 1.00541 1.69665 1.46653 1.08980 1.30657 0.84900 0.78113 0.77829 0.77670 1.19984 1.19595 1.19586 1.22120 1.00778 0.94723 0.98780 1.21268 0.78717 0.96790 0.98412 0.88979 1.22044 0.99513 0.94019 1.02816 0.91636 0.91607 0.91921 0.91954 0.92301 0.91941 0.91431 0.88284 0.87408 0.88549 0.87153 0.92464 0.89589 0.83749 0.87488 0.91464 0.76890 0.91299 0.90035 0.92445 0.93452 0.92453 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.91 71.98 0.71 -0.46 16 2 C -0.13 -1.61 6.30 30.59 0.19 -1.41 16 3 C 0.06 0.71 5.94 71.98 0.43 1.14 16 4 O -0.40 -8.17 9.88 -129.94 -1.28 -9.45 16 5 C 0.04 0.64 4.82 71.24 0.34 0.98 16 6 C 0.51 10.89 7.68 87.66 0.67 11.57 16 7 O -0.56 -16.80 11.90 15.98 0.19 -16.61 16 8 N -0.61 -10.48 2.97 -795.02 -2.36 -12.84 16 9 C 0.11 1.22 6.33 86.36 0.55 1.77 16 10 C -0.12 -2.12 5.59 30.67 0.17 -1.95 16 11 C 0.09 1.84 2.46 44.95 0.11 1.95 16 12 H 0.06 1.10 7.80 -2.38 -0.02 1.08 16 13 N -0.68 -20.13 5.93 -495.41 -2.94 -23.07 16 14 C 0.07 2.16 5.97 85.56 0.51 2.67 16 15 C 0.44 20.25 7.82 87.66 0.69 20.94 16 16 O -0.63 -34.52 15.78 -3.07 -0.05 -34.57 16 17 N -0.57 -28.75 5.29 -306.98 -1.62 -30.38 16 18 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 21 N -0.92 -48.63 13.05 21.66 0.28 -48.34 16 22 Si 0.99 42.53 29.55 68.60 2.03 44.55 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 C -0.13 -2.54 4.65 30.67 0.14 -2.39 16 27 C 0.15 2.81 3.49 44.98 0.16 2.97 16 28 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 29 C -0.13 -2.86 7.59 71.98 0.55 -2.31 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.87 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 1.03 7.48 -2.38 -0.02 1.01 16 38 H 0.11 0.91 8.11 -2.39 -0.02 0.89 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.11 0.71 5.96 -2.39 -0.01 0.69 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.40 7.42 -2.39 -0.02 1.38 16 43 H 0.34 11.01 8.03 -89.69 -0.72 10.29 16 44 H 0.11 2.97 7.41 -2.39 -0.02 2.95 16 45 H 0.07 1.85 8.05 -2.39 -0.02 1.83 16 46 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 47 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 48 H 0.08 1.55 8.10 -2.38 -0.02 1.54 16 49 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.05 1.31 6.73 -2.39 -0.02 1.30 16 51 H 0.06 1.45 6.77 -2.39 -0.02 1.43 16 52 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -75.75 412.33 0.21 -75.53 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -0.53 Total: 37.84 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 6.50 Total: 17.33 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -6.64 Total: -114.63 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -1.14 Total: -60.63 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -75.75 0.21 -75.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269917770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.075 kcal (2) G-P(sol) polarization free energy of solvation -75.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds