Wall clock time and date at job start Wed Apr 1 2020 00:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47121 * 2 1 4 4 O 1.42896 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.42908 * 113.99581 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46675 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00477 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99674 * 180.02562 * 6 5 4 9 9 C 1.46922 * 120.63123 * 0.02562 * 8 6 5 10 10 C 1.53187 * 108.77785 * 126.37267 * 9 8 6 11 11 C 1.53038 * 109.31522 * 54.63082 * 10 9 8 12 12 H 1.09008 * 109.44611 * 58.65039 * 11 10 9 13 13 N 1.46895 * 109.46212 * 178.61540 * 11 10 9 14 14 C 1.46905 * 111.00171 * 275.06966 * 13 11 10 15 15 C 1.50706 * 109.46943 * 180.02562 * 14 13 11 16 16 O 1.21292 * 120.00254 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99766 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99970 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99992 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99671 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99798 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00536 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47326 * 270.00539 * 22 20 18 24 24 H 1.48506 * 109.46545 * 30.00289 * 22 20 18 25 25 H 1.48498 * 109.47210 * 150.00000 * 22 20 18 26 26 C 1.53043 * 109.53853 * 298.63893 * 11 10 9 27 27 C 1.46925 * 120.62953 * 179.97438 * 8 6 5 28 28 H 1.08999 * 109.59045 * 353.41197 * 27 8 6 29 29 C 1.52999 * 109.70796 * 113.76932 * 27 8 6 30 30 H 1.08997 * 109.46526 * 299.99284 * 1 2 3 31 31 H 1.08999 * 109.47023 * 59.99842 * 1 2 3 32 32 H 1.09004 * 109.46969 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46980 * 240.00210 * 2 1 3 34 34 H 1.09000 * 109.47525 * 120.00317 * 2 1 3 35 35 H 1.09004 * 109.46602 * 60.00571 * 3 2 1 36 36 H 1.09000 * 109.47180 * 300.00529 * 3 2 1 37 37 H 1.08994 * 109.47298 * 60.00468 * 5 4 3 38 38 H 1.09003 * 109.46920 * 299.99494 * 5 4 3 39 39 H 1.09004 * 109.58540 * 246.15838 * 9 8 6 40 40 H 1.08998 * 109.58966 * 6.44070 * 9 8 6 41 41 H 1.09002 * 109.50013 * 294.68257 * 10 9 8 42 42 H 1.09003 * 109.50163 * 174.58544 * 10 9 8 43 43 H 1.00907 * 111.00152 * 151.11495 * 13 11 10 44 44 H 1.08996 * 109.46646 * 60.00323 * 14 13 11 45 45 H 1.09000 * 109.46710 * 299.99944 * 14 13 11 46 46 H 0.97004 * 119.99528 * 0.02562 * 17 15 14 47 47 H 0.96996 * 120.00340 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.49626 * 181.31439 * 26 11 10 49 49 H 1.08993 * 109.49649 * 301.41206 * 26 11 10 50 50 H 1.08998 * 109.47548 * 179.35758 * 29 27 8 51 51 H 1.09000 * 109.46978 * 299.36301 * 29 27 8 52 52 H 1.09007 * 109.46856 * 59.35799 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7481 -0.0001 6 6 5.5525 2.6290 -0.0014 7 8 6.0742 1.5341 -0.0022 8 7 6.3164 3.7394 -0.0007 9 6 5.6992 5.0727 0.0020 10 6 6.2739 5.8798 1.1703 11 6 7.8011 5.8944 1.0727 12 1 8.0997 6.3312 0.1197 13 7 8.3542 6.6953 2.1729 14 6 8.3796 8.1221 1.8244 15 6 8.9525 8.9100 2.9743 16 8 9.3055 8.3390 3.9846 17 7 9.0737 10.2489 2.8797 18 6 9.5944 10.9657 3.9260 19 1 9.9079 10.4574 4.8258 20 6 9.7188 12.3462 3.8286 21 7 10.2184 13.0332 4.8312 22 14 9.1773 13.2254 2.2719 23 1 10.3189 13.3048 1.3256 24 1 8.0628 12.4736 1.6411 25 1 8.7196 14.5966 2.6116 26 6 8.3336 4.4626 1.1664 27 6 7.7823 3.6396 -0.0014 28 1 8.0776 2.5968 0.1153 29 6 8.3359 4.1850 -1.3193 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6766 1.9564 -0.8899 37 1 3.7290 3.2884 0.8903 38 1 3.7282 3.2895 -0.8897 39 1 5.9213 5.5801 -0.9368 40 1 4.6198 4.9755 0.1183 41 1 5.9740 5.4205 2.1123 42 1 5.8968 6.9016 1.1271 43 1 9.2739 6.3695 2.4305 44 1 7.3652 8.4640 1.6189 45 1 8.9989 8.2690 0.9395 46 1 8.7918 10.7055 2.0716 47 1 10.3056 13.9969 4.7632 48 1 9.4226 4.4758 1.1203 49 1 8.0143 4.0167 2.1083 50 1 9.4239 4.1196 -1.3111 51 1 7.9428 3.5978 -2.1492 52 1 8.0353 5.2262 -1.4364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269917772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:09 Heat of formation + Delta-G solvation = -117.231327 kcal Electronic energy + Delta-G solvation = -29885.392996 eV Core-core repulsion = 25691.921295 eV Total energy + Delta-G solvation = -4193.471701 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77318 -38.92505 -38.34901 -37.60014 -35.29407 -34.13844 -33.94328 -33.03516 -31.72236 -31.23694 -28.83711 -28.13682 -26.45918 -26.00050 -24.24225 -23.72547 -22.27380 -21.97133 -20.95962 -19.45064 -18.76482 -18.28057 -17.81294 -16.95942 -16.78768 -16.42688 -15.87483 -15.64985 -15.40849 -15.23053 -14.83972 -14.76744 -14.50068 -14.14919 -13.92396 -13.85695 -13.54146 -13.41390 -13.17053 -12.99548 -12.54084 -12.52279 -12.49440 -12.48792 -12.36400 -12.25110 -11.98509 -11.93032 -11.53546 -11.37681 -11.35286 -11.31261 -11.20448 -10.96159 -10.62479 -10.44535 -10.11858 -10.00050 -9.93374 -9.60065 -8.98111 -8.60947 -8.23488 -8.17918 -6.33470 -3.85070 2.30627 2.34145 2.99321 3.03627 3.12341 3.37546 3.71034 3.95959 4.07583 4.15143 4.40637 4.49569 4.51891 4.59388 4.68370 4.70595 4.72578 4.77173 4.86442 4.86863 4.99549 5.02354 5.03876 5.12632 5.15283 5.16063 5.21975 5.27009 5.30551 5.40382 5.55395 5.55851 5.65221 5.67696 5.68152 5.74387 5.76774 5.77037 5.84020 5.88733 5.97247 6.17619 6.24333 6.65407 7.06656 7.08336 7.52926 7.56024 7.89023 8.12101 8.57182 8.92593 9.39809 9.80058 10.79671 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.001824 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.541283 B =15346.102537 C =16010.981762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.046 3.954 6 C 0.518 3.482 7 O -0.521 6.521 8 N -0.605 5.605 9 C 0.104 3.896 10 C -0.125 4.125 11 C 0.088 3.912 12 H 0.047 0.953 13 N -0.665 5.665 14 C 0.049 3.951 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.276 1.276 26 C -0.131 4.131 27 C 0.142 3.858 28 H 0.102 0.898 29 C -0.163 4.163 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.353 0.647 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.058 0.942 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.199 -18.974 -17.129 30.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.034 4.034 6 C 0.305 3.695 7 O -0.396 6.396 8 N -0.341 5.341 9 C -0.019 4.019 10 C -0.164 4.164 11 C -0.022 4.022 12 H 0.065 0.935 13 N -0.298 5.298 14 C -0.084 4.084 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.202 1.202 26 C -0.169 4.169 27 C 0.039 3.961 28 H 0.120 0.880 29 C -0.221 4.221 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.173 0.827 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.089 0.911 51 H 0.077 0.923 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.095 -19.879 -15.993 30.166 hybrid contribution 0.111 1.502 -1.768 2.323 sum -15.985 -18.377 -17.761 30.144 Atomic orbital electron populations 1.21700 0.94603 1.02370 1.02036 1.21452 0.95648 0.95347 1.03686 1.22650 0.80373 0.98382 1.00318 1.88003 1.19657 1.25253 1.95432 1.22240 0.91751 0.86920 1.02510 1.20198 0.88608 0.84154 0.76510 1.90721 1.74429 1.26161 1.48322 1.48143 1.06588 1.05730 1.73650 1.21842 0.97710 0.82763 0.99565 1.21953 0.95478 1.00520 0.98449 1.21509 0.94803 0.92876 0.93052 0.93493 1.60065 1.31203 1.01101 1.37399 1.21752 1.01207 0.89280 0.96166 1.19719 0.84834 0.82586 0.89390 1.90572 1.52861 1.69312 1.31824 1.42209 1.57759 1.06176 1.16864 1.19437 1.37625 0.89758 0.96625 0.86288 1.25041 0.97462 0.96147 0.97493 1.69621 1.44139 1.07744 1.30582 0.86668 0.79118 0.80330 0.83234 1.19675 1.19507 1.20162 1.22106 1.00807 0.94963 0.99034 1.21141 0.78396 1.01625 0.94929 0.87964 1.22169 1.01495 1.01627 0.96810 0.92442 0.92530 0.91916 0.91005 0.90911 0.93029 0.93169 0.90079 0.90353 0.90959 0.89820 0.90385 0.90355 0.82672 0.89602 0.93807 0.79729 0.91602 0.90406 0.90247 0.91143 0.92316 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.81 6.30 -26.73 -0.17 -0.98 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 O -0.37 -3.87 9.88 -55.14 -0.54 -4.42 16 5 C 0.05 0.38 4.76 36.01 0.17 0.55 16 6 C 0.52 5.85 7.78 -10.98 -0.09 5.76 16 7 O -0.52 -8.13 15.91 -14.35 -0.23 -8.36 16 8 N -0.61 -5.59 2.68 -165.26 -0.44 -6.04 16 9 C 0.10 0.72 5.93 -3.72 -0.02 0.70 16 10 C -0.13 -1.14 5.59 -26.62 -0.15 -1.29 16 11 C 0.09 0.91 2.25 -67.67 -0.15 0.76 16 12 H 0.05 0.45 6.17 -51.92 -0.32 0.13 16 13 N -0.66 -9.54 5.93 -107.94 -0.64 -10.18 16 14 C 0.05 0.75 5.97 -4.97 -0.03 0.73 16 15 C 0.45 9.91 7.82 -10.98 -0.09 9.82 16 16 O -0.56 -14.92 15.78 5.55 0.09 -14.84 16 17 N -0.59 -13.75 5.09 -10.96 -0.06 -13.81 16 18 C -0.31 -8.55 10.16 -14.93 -0.15 -8.71 16 19 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.51 13.96 55.50 0.77 -24.74 16 22 Si 0.88 18.99 27.74 -169.99 -4.72 14.28 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 C -0.13 -1.28 4.83 -26.64 -0.13 -1.41 16 27 C 0.14 1.35 3.19 -67.63 -0.22 1.13 16 28 H 0.10 1.14 7.00 -51.93 -0.36 0.77 16 29 C -0.16 -1.27 9.03 37.16 0.34 -0.94 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.52 7.69 -51.93 -0.40 0.12 16 38 H 0.08 0.45 7.94 -51.93 -0.41 0.04 16 39 H 0.07 0.42 7.50 -51.93 -0.39 0.03 16 40 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.70 7.42 -51.93 -0.39 0.31 16 43 H 0.35 5.36 8.03 -39.29 -0.32 5.04 16 44 H 0.09 1.18 7.41 -51.93 -0.38 0.79 16 45 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 46 H 0.37 7.50 5.76 -40.82 -0.24 7.27 16 47 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 52 H 0.06 0.46 5.75 -51.93 -0.30 0.16 16 LS Contribution 410.68 15.07 6.19 6.19 Total: -1.00 -35.62 410.68 -8.62 -44.24 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -8.86 Total: 10.20 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.19 Total: 7.47 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.37 Total: -54.76 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.69 Total: -27.61 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.72 Total: 14.28 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.62 -8.62 -44.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269917772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.988 kcal (2) G-P(sol) polarization free energy of solvation -35.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds