Wall clock time and date at job start Wed Apr 1 2020 00:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46866 * 2 1 4 4 O 1.42907 * 109.46982 * 180.02562 * 3 2 1 5 5 C 1.42897 * 113.99673 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46683 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00332 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00280 * 180.02562 * 6 5 4 9 9 C 1.46929 * 120.62790 * 5.76523 * 8 6 5 10 10 C 1.53188 * 108.77801 * 233.63342 * 9 8 6 11 11 C 1.53040 * 109.30961 * 305.36445 * 10 9 8 12 12 H 1.08999 * 109.46120 * 301.35326 * 11 10 9 13 13 N 1.46899 * 109.45983 * 181.38569 * 11 10 9 14 14 C 1.46900 * 110.99997 * 84.99913 * 13 11 10 15 15 C 1.50704 * 109.47032 * 179.97438 * 14 13 11 16 16 O 1.21291 * 120.00258 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99895 * 179.97438 * 15 14 13 18 18 C 1.37099 * 120.00271 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99208 * 0.02562 * 18 17 15 20 20 C 1.38940 * 120.00222 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00322 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00121 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47371 * 59.99579 * 22 20 18 24 24 H 1.48500 * 109.47647 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.46930 * 300.00127 * 22 20 18 26 26 C 1.53036 * 109.53947 * 61.36283 * 11 10 9 27 27 C 1.46923 * 120.63410 * 185.78960 * 8 6 5 28 28 H 1.09008 * 109.58304 * 246.29710 * 27 8 6 29 29 C 1.52991 * 109.58893 * 6.57882 * 27 8 6 30 30 H 1.09002 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47435 * 300.00074 * 1 2 3 32 32 H 1.09002 * 109.47412 * 60.00026 * 1 2 3 33 33 H 1.08998 * 109.46685 * 240.00230 * 2 1 3 34 34 H 1.08993 * 109.47226 * 120.00198 * 2 1 3 35 35 H 1.08993 * 109.47244 * 60.00096 * 3 2 1 36 36 H 1.09002 * 109.47083 * 300.00175 * 3 2 1 37 37 H 1.08999 * 109.47308 * 60.00400 * 5 4 3 38 38 H 1.08995 * 109.47559 * 300.00075 * 5 4 3 39 39 H 1.09007 * 109.58654 * 353.41501 * 9 8 6 40 40 H 1.08998 * 109.58833 * 113.83782 * 9 8 6 41 41 H 1.09001 * 109.50227 * 65.31120 * 10 9 8 42 42 H 1.09001 * 109.50001 * 185.38113 * 10 9 8 43 43 H 1.00899 * 111.00058 * 208.95145 * 13 11 10 44 44 H 1.08998 * 109.47234 * 299.99831 * 14 13 11 45 45 H 1.08997 * 109.47178 * 60.00494 * 14 13 11 46 46 H 0.97000 * 119.99979 * 0.02562 * 17 15 14 47 47 H 0.96997 * 120.00630 * 180.02562 * 21 20 18 48 48 H 1.09003 * 109.50202 * 178.68089 * 26 11 10 49 49 H 1.09002 * 109.49516 * 58.58912 * 26 11 10 50 50 H 1.09008 * 109.47040 * 54.21400 * 29 27 8 51 51 H 1.08995 * 109.47407 * 174.21578 * 29 27 8 52 52 H 1.09000 * 109.47483 * 294.22289 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0501 2.7480 -0.0012 6 6 5.5524 2.6290 -0.0012 7 8 6.0740 1.5342 -0.0012 8 7 6.3164 3.7394 -0.0012 9 6 5.7044 5.0691 0.1257 10 6 6.1810 5.9444 -1.0377 11 6 7.7111 5.9569 -1.0678 12 1 8.0898 6.3381 -0.1195 13 7 8.1719 6.8220 -2.1619 14 6 8.2315 8.2259 -1.7336 15 6 8.7079 9.0809 -2.8796 16 8 8.9713 8.5710 -3.9482 17 7 8.8401 10.4123 -2.7175 18 6 9.2730 11.1903 -3.7601 19 1 9.5075 10.7361 -4.7115 20 6 9.4099 12.5628 -3.5927 21 7 9.1250 13.1152 -2.4350 22 14 9.9989 13.6228 -5.0136 23 1 9.0552 13.4926 -6.1528 24 1 10.0600 15.0419 -4.5804 25 1 11.3505 13.1764 -5.4371 26 6 8.2303 4.5345 -1.2892 27 6 7.7769 3.6432 -0.1287 28 1 8.2472 3.9768 0.7964 29 6 8.1727 2.1926 -0.4111 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8899 36 1 1.6765 1.9564 -0.8900 37 1 3.7289 3.2892 0.8887 38 1 3.7281 3.2887 -0.8912 39 1 4.6188 4.9765 0.0923 40 1 6.0057 5.5213 1.0706 41 1 5.8020 5.5400 -1.9763 42 1 5.8110 6.9609 -0.9036 43 1 9.0653 6.5135 -2.5150 44 1 7.2393 8.5536 -1.4233 45 1 8.9239 8.3216 -0.8973 46 1 8.6291 10.8202 -1.8630 47 1 9.2202 14.0734 -2.3182 48 1 9.3194 4.5475 -1.3339 49 1 7.8320 4.1434 -2.2254 50 1 7.6258 1.8295 -1.2813 51 1 9.2436 2.1396 -0.6069 52 1 7.9305 1.5749 0.4537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269917773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:13 Heat of formation + Delta-G solvation = -110.743113 kcal Electronic energy + Delta-G solvation = -29830.071711 eV Core-core repulsion = 25636.881359 eV Total energy + Delta-G solvation = -4193.190351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.83526 -38.75037 -38.22390 -37.47384 -35.15089 -34.17591 -33.88280 -33.16219 -31.40680 -31.05827 -28.81985 -27.64593 -26.24239 -25.95686 -24.38189 -23.67008 -22.19695 -21.95417 -20.66095 -19.45005 -19.09804 -17.90304 -17.46255 -16.92463 -16.85574 -16.27302 -16.03982 -15.54705 -15.33117 -15.00975 -14.88649 -14.54651 -14.48784 -14.03366 -13.91905 -13.78873 -13.64612 -13.35195 -13.11474 -12.67592 -12.55842 -12.44012 -12.39032 -12.27465 -12.18050 -12.03393 -11.81266 -11.61407 -11.42208 -11.34656 -11.30281 -11.22347 -11.06496 -10.86763 -10.58497 -10.45758 -10.23167 -10.07897 -9.52015 -9.24132 -8.84782 -8.47896 -8.11039 -7.98147 -6.43664 -3.84616 2.33429 2.41167 3.18740 3.24547 3.28974 3.40969 3.88326 4.01442 4.20223 4.25234 4.47104 4.51996 4.57918 4.63538 4.73458 4.80589 4.80955 4.89044 4.93245 5.02243 5.03981 5.05991 5.09909 5.20647 5.21980 5.29152 5.30423 5.38004 5.38946 5.57186 5.58872 5.69876 5.70262 5.75143 5.78918 5.81892 5.91645 5.93846 6.06102 6.15935 6.18187 6.28599 6.47359 6.69224 7.13990 7.20281 7.53121 7.62386 7.97199 8.04152 8.59195 9.15898 9.52085 10.03656 10.73934 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.001734 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.105062 B =16145.617246 C =17015.047935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.043 3.957 6 C 0.518 3.482 7 O -0.513 6.513 8 N -0.608 5.608 9 C 0.106 3.894 10 C -0.125 4.125 11 C 0.088 3.912 12 H 0.044 0.956 13 N -0.665 5.665 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.301 4.301 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.133 4.133 27 C 0.150 3.850 28 H 0.073 0.927 29 C -0.139 4.139 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.351 0.649 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.046 0.954 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.302 -19.845 11.238 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.037 4.037 6 C 0.305 3.695 7 O -0.388 6.388 8 N -0.344 5.344 9 C -0.018 4.018 10 C -0.164 4.164 11 C -0.022 4.022 12 H 0.062 0.938 13 N -0.297 5.297 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.172 4.172 27 C 0.047 3.953 28 H 0.091 0.909 29 C -0.196 4.196 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.171 0.829 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.065 0.935 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.339 -20.683 10.284 26.674 hybrid contribution 0.690 1.490 0.433 1.698 sum -12.649 -19.193 10.717 25.362 Atomic orbital electron populations 1.21701 0.94630 1.02345 1.02045 1.21444 0.95631 0.95369 1.03644 1.22644 0.80446 0.98327 1.00308 1.87993 1.19592 1.25308 1.95431 1.22299 0.92171 0.86837 1.02424 1.20153 0.88383 0.84295 0.76706 1.90770 1.73272 1.26820 1.47916 1.48134 1.07115 1.05973 1.73185 1.21863 0.98043 0.82404 0.99462 1.21957 0.95913 1.00081 0.98453 1.21471 0.95114 0.92329 0.93294 0.93815 1.60083 1.36118 1.00748 1.32789 1.21717 1.01176 0.89107 0.96133 1.19818 0.84940 0.83154 0.89566 1.90527 1.55321 1.72920 1.27952 1.41857 1.58515 1.05195 1.14436 1.19659 1.40960 0.88673 0.93735 0.87980 1.25250 0.97573 0.97205 0.97826 1.69596 1.48839 1.12524 1.23373 0.85919 0.79396 0.78256 0.80651 1.19883 1.20970 1.19916 1.22213 1.01228 0.94432 0.99285 1.21266 0.78604 0.97398 0.98014 0.90931 1.22208 0.99428 0.93723 1.04269 0.91938 0.92524 0.92451 0.90948 0.91019 0.93179 0.93077 0.90498 0.90189 0.89799 0.90865 0.90489 0.90266 0.82852 0.89705 0.93914 0.77487 0.91821 0.90508 0.90284 0.91610 0.93499 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.82 6.30 -26.73 -0.17 -0.99 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 O -0.36 -3.90 9.88 -55.14 -0.54 -4.44 16 5 C 0.04 0.36 4.77 36.00 0.17 0.54 16 6 C 0.52 5.81 7.58 -10.98 -0.08 5.73 16 7 O -0.51 -7.51 12.07 -14.35 -0.17 -7.68 16 8 N -0.61 -5.86 2.97 -165.22 -0.49 -6.35 16 9 C 0.11 0.79 6.35 -3.71 -0.02 0.77 16 10 C -0.13 -1.22 5.59 -26.61 -0.15 -1.37 16 11 C 0.09 0.99 2.46 -67.67 -0.17 0.83 16 12 H 0.04 0.47 7.80 -51.93 -0.40 0.07 16 13 N -0.66 -10.16 5.93 -107.95 -0.64 -10.80 16 14 C 0.05 0.86 5.96 -4.97 -0.03 0.83 16 15 C 0.44 10.18 7.82 -10.98 -0.09 10.10 16 16 O -0.58 -15.69 15.78 5.55 0.09 -15.60 16 17 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 18 C -0.30 -8.32 9.68 -14.94 -0.14 -8.47 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.23 13.05 55.49 0.72 -23.50 16 22 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C -0.13 -1.39 4.65 -26.62 -0.12 -1.52 16 27 C 0.15 1.50 3.49 -67.61 -0.24 1.26 16 28 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 29 C -0.14 -1.54 7.61 37.15 0.28 -1.26 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.47 7.71 -51.93 -0.40 0.07 16 38 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 39 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.77 7.43 -51.93 -0.39 0.39 16 43 H 0.35 5.65 8.03 -39.29 -0.32 5.33 16 44 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 45 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 46 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 49 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.06 0.85 6.96 -51.92 -0.36 0.48 16 51 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.08 0.98 6.54 -51.93 -0.34 0.64 16 LS Contribution 412.41 15.07 6.21 6.21 Total: -1.00 -33.51 412.41 -9.22 -42.73 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -9.06 Total: 10.42 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.26 Total: 7.26 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.47 Total: -54.77 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.63 Total: -27.72 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.51 -9.22 -42.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269917773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.009 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds