Wall clock time and date at job start Wed Apr 1 2020 01:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47132 * 2 1 4 4 C 1.52995 * 109.47337 * 119.99995 * 2 1 3 5 5 H 1.09004 * 109.47357 * 300.00497 * 4 2 1 6 6 C 1.53002 * 109.47369 * 60.00021 * 4 2 1 7 7 C 1.50697 * 109.47331 * 180.02562 * 4 2 1 8 8 O 1.21284 * 120.00155 * 0.02562 * 7 4 2 9 9 N 1.34780 * 120.00366 * 180.02562 * 7 4 2 10 10 C 1.46492 * 120.00248 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.47294 * 184.98612 * 10 9 7 12 12 H 1.09001 * 109.50544 * 185.85275 * 11 10 9 13 13 C 1.53090 * 109.54319 * 65.73796 * 11 10 9 14 14 O 1.43016 * 109.26360 * 183.19653 * 13 11 10 15 15 C 1.43016 * 113.73721 * 58.66914 * 14 13 11 16 16 C 1.53107 * 109.26045 * 301.33430 * 15 14 13 17 17 N 1.47012 * 109.25547 * 56.84517 * 16 15 14 18 18 C 1.46895 * 110.99883 * 177.60969 * 17 16 15 19 19 C 1.50700 * 109.47116 * 287.57235 * 18 17 16 20 20 O 1.21295 * 120.00344 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00178 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00128 * 179.72835 * 21 19 18 23 23 H 1.07997 * 119.99860 * 0.26429 * 22 21 19 24 24 C 1.38954 * 120.00072 * 180.27164 * 22 21 19 25 25 N 1.31408 * 119.99592 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00100 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46785 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47137 * 119.99683 * 26 24 22 29 29 H 1.48496 * 109.47159 * 240.00340 * 26 24 22 30 30 H 1.09001 * 109.46978 * 299.99889 * 1 2 3 31 31 H 1.08999 * 109.47114 * 60.00223 * 1 2 3 32 32 H 1.09008 * 109.46976 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46978 * 240.00111 * 2 1 3 34 34 H 1.08994 * 109.47112 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47263 * 300.00323 * 3 2 1 36 36 H 1.09004 * 109.46599 * 60.00094 * 3 2 1 37 37 H 1.08999 * 109.47627 * 179.97438 * 6 4 2 38 38 H 1.09008 * 109.47062 * 300.00241 * 6 4 2 39 39 H 1.09001 * 109.46993 * 59.99855 * 6 4 2 40 40 H 0.97007 * 119.99752 * 359.97438 * 9 7 4 41 41 H 1.09008 * 109.47222 * 64.98578 * 10 9 7 42 42 H 1.08999 * 109.47240 * 304.98705 * 10 9 7 43 43 H 1.08997 * 109.50677 * 303.13258 * 13 11 10 44 44 H 1.09007 * 109.50545 * 63.26534 * 13 11 10 45 45 H 1.08994 * 109.50832 * 61.26609 * 15 14 13 46 46 H 1.08999 * 109.50786 * 181.35865 * 15 14 13 47 47 H 1.09002 * 109.50595 * 296.91512 * 16 15 14 48 48 H 1.08990 * 109.50784 * 176.78075 * 16 15 14 49 49 H 1.09009 * 109.47199 * 167.57287 * 18 17 16 50 50 H 1.08995 * 109.47672 * 47.57359 * 18 17 16 51 51 H 0.97003 * 119.99732 * 359.97438 * 21 19 18 52 52 H 0.97008 * 119.99327 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1637 1.2493 7 6 3.5470 -0.7207 1.2495 8 8 4.1535 -0.1947 0.3403 9 7 4.2210 -1.3046 2.2601 10 6 5.6859 -1.3046 2.2601 11 6 6.1960 -2.1321 3.4416 12 1 7.2810 -2.0476 3.5037 13 6 5.8079 -3.5998 3.2444 14 8 6.2217 -4.3548 4.3863 15 6 5.6526 -3.8973 5.6161 16 6 6.0392 -2.4325 5.8374 17 7 5.5929 -1.6341 4.6865 18 6 5.8947 -0.2102 4.8848 19 6 4.9639 0.3607 5.9234 20 8 4.1306 -0.3487 6.4466 21 7 5.0565 1.6598 6.2703 22 6 4.2060 2.1804 7.2111 23 1 3.4646 1.5486 7.6774 24 6 4.2978 3.5211 7.5646 25 7 5.2002 4.2898 6.9974 26 14 3.1385 4.2307 8.8459 27 1 2.2224 3.1661 9.3282 28 1 3.9268 4.7606 9.9874 29 1 2.3442 5.3296 8.2404 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 1.8938 -2.6777 2.1390 38 1 0.4400 -2.1638 1.2493 39 1 1.8934 -2.6776 0.3592 40 1 3.7360 -1.7250 2.9875 41 1 6.0493 -0.2807 2.3498 42 1 6.0493 -1.7387 1.3287 43 1 4.7269 -3.6780 3.1287 44 1 6.2992 -3.9895 2.3528 45 1 4.5672 -3.9841 5.5693 46 1 6.0311 -4.5027 6.4397 47 1 7.1217 -2.3529 5.9377 48 1 5.5608 -2.0629 6.7443 49 1 5.7610 0.3241 3.9441 50 1 6.9256 -0.1007 5.2214 51 1 5.7226 2.2272 5.8516 52 1 5.2645 5.2256 7.2445 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272892166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:58 Heat of formation + Delta-G solvation = -120.707409 kcal Electronic energy + Delta-G solvation = -31995.363489 eV Core-core repulsion = 27801.741053 eV Total energy + Delta-G solvation = -4193.622436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42622 -39.56643 -38.02640 -36.46471 -35.69393 -34.44576 -33.77125 -31.80143 -31.28689 -30.42487 -29.05181 -27.36318 -26.56843 -25.56944 -24.33448 -23.82588 -22.59636 -21.17664 -19.89375 -19.59088 -19.20946 -17.91939 -17.30154 -16.73043 -16.38204 -15.89734 -15.83776 -15.23062 -15.08472 -14.77756 -14.73250 -14.49280 -14.25217 -14.11703 -13.84826 -13.65816 -13.47204 -13.39554 -13.25501 -12.59581 -12.30286 -12.23339 -12.17416 -12.10587 -12.00343 -11.68584 -11.56645 -11.55134 -11.37722 -11.18662 -10.98356 -10.88514 -10.72084 -10.56973 -10.51906 -10.37960 -10.26484 -9.73267 -9.53438 -9.43904 -8.88177 -8.57985 -8.07628 -7.98742 -6.45325 -3.86393 2.77014 3.13154 3.23587 3.25196 3.30738 3.70902 3.82836 3.86006 4.17456 4.60349 4.61715 4.65624 4.79334 4.83936 4.94629 5.02132 5.15664 5.18812 5.19610 5.29013 5.31255 5.37945 5.39967 5.44207 5.51683 5.58851 5.64486 5.67050 5.73370 5.74731 5.75580 5.80770 5.84256 5.89760 5.95374 6.01977 6.06129 6.10656 6.17875 6.20938 6.38633 6.44025 6.67114 7.02103 7.02817 7.16509 7.51461 7.66772 8.01839 8.37097 8.56883 9.14066 9.50129 10.01006 10.72337 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007303 B = 0.004186 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3833.048090 B = 6686.959145 C = 9393.250216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.072 4.072 3 C -0.161 4.161 4 C -0.109 4.109 5 H 0.100 0.900 6 C -0.144 4.144 7 C 0.519 3.481 8 O -0.544 6.544 9 N -0.715 5.715 10 C 0.127 3.873 11 C 0.031 3.969 12 H 0.064 0.936 13 C 0.074 3.926 14 O -0.388 6.388 15 C 0.065 3.935 16 C 0.022 3.978 17 N -0.506 5.506 18 C 0.039 3.961 19 C 0.445 3.555 20 O -0.579 6.579 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.900 5.900 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.411 0.589 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.035 0.965 48 H 0.107 0.893 49 H 0.092 0.908 50 H 0.050 0.950 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 -12.830 -11.225 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.218 4.218 4 C -0.130 4.130 5 H 0.118 0.882 6 C -0.202 4.202 7 C 0.305 3.695 8 O -0.423 6.423 9 N -0.368 5.368 10 C 0.002 3.998 11 C -0.078 4.078 12 H 0.081 0.919 13 C -0.004 4.004 14 O -0.306 6.306 15 C -0.012 4.012 16 C -0.106 4.106 17 N -0.232 5.232 18 C -0.092 4.092 19 C 0.230 3.770 20 O -0.463 6.463 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.541 5.541 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.248 0.752 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.053 0.947 48 H 0.125 0.875 49 H 0.110 0.890 50 H 0.068 0.932 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.125 -12.944 -11.517 17.456 hybrid contribution 0.464 1.167 0.941 1.570 sum -1.661 -11.777 -10.576 15.916 Atomic orbital electron populations 1.21936 0.95191 1.01666 1.01946 1.20862 0.94954 0.96783 0.96514 1.22080 1.03963 0.94809 1.00915 1.21396 0.91746 0.98547 1.01353 0.88236 1.21824 1.02013 0.94099 1.02255 1.20629 0.90068 0.77305 0.81453 1.90610 1.70478 1.44723 1.36441 1.45931 1.06747 1.58696 1.25448 1.21322 0.81090 1.00309 0.97032 1.22654 0.98138 0.96018 0.90998 0.91853 1.22623 1.00001 0.88804 0.88943 1.87959 1.71063 1.55992 1.15599 1.22698 0.98615 0.93697 0.86158 1.22860 0.98264 0.93713 0.95767 1.61771 1.58183 1.02045 1.01197 1.21993 0.97901 0.88752 1.00568 1.19640 0.87649 0.83249 0.86417 1.90494 1.39146 1.59271 1.57372 1.41874 1.32909 1.08066 1.37111 1.19718 1.13409 0.93621 1.16064 0.87875 1.25261 0.97730 0.96134 0.98753 1.69622 1.34256 1.07156 1.43095 0.85820 0.79791 0.78932 0.79922 1.19231 1.20760 1.20729 0.92511 0.92640 0.92491 0.90890 0.89863 0.93301 0.93255 0.92097 0.91176 0.92305 0.75180 0.91118 0.90652 0.92286 0.88596 0.91982 0.88614 0.94658 0.87488 0.88968 0.93191 0.77573 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.84 37.16 0.33 -1.06 16 2 C -0.07 -0.81 2.15 -90.62 -0.19 -1.01 16 3 C -0.16 -2.06 8.87 37.16 0.33 -1.73 16 4 C -0.11 -1.25 2.32 -91.77 -0.21 -1.46 16 5 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 6 C -0.14 -1.31 8.74 37.16 0.32 -0.98 16 7 C 0.52 7.06 6.86 -10.99 -0.08 6.98 16 8 O -0.54 -8.87 13.65 5.55 0.08 -8.80 16 9 N -0.72 -8.95 4.94 -60.30 -0.30 -9.25 16 10 C 0.13 1.51 4.72 -4.05 -0.02 1.49 16 11 C 0.03 0.37 2.25 -67.60 -0.15 0.22 16 12 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 13 C 0.07 0.80 6.21 37.20 0.23 1.03 16 14 O -0.39 -4.88 10.83 -35.23 -0.38 -5.26 16 15 C 0.07 0.80 7.01 37.21 0.26 1.06 16 16 C 0.02 0.31 5.31 -3.71 -0.02 0.29 16 17 N -0.51 -7.39 3.49 -227.77 -0.79 -8.18 16 18 C 0.04 0.65 5.30 -4.98 -0.03 0.63 16 19 C 0.45 9.90 7.51 -10.98 -0.08 9.82 16 20 O -0.58 -14.44 14.44 5.54 0.08 -14.36 16 21 N -0.56 -13.83 5.29 -10.96 -0.06 -13.88 16 22 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 23 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 26 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.46 6.43 -51.92 -0.33 0.12 16 33 H 0.07 0.86 8.10 -51.93 -0.42 0.43 16 34 H 0.08 1.26 5.51 -51.93 -0.29 0.98 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.53 7.56 -51.93 -0.39 0.14 16 38 H 0.07 0.56 6.43 -51.92 -0.33 0.22 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.41 5.18 6.85 -40.82 -0.28 4.90 16 41 H 0.07 0.93 6.38 -51.92 -0.33 0.60 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.63 7.28 -51.93 -0.38 0.25 16 44 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.11 1.85 6.44 -51.93 -0.33 1.51 16 49 H 0.09 1.49 5.65 -51.92 -0.29 1.19 16 50 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 51 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 52 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 403.55 15.07 6.08 6.08 Total: -1.00 -30.77 403.55 -7.85 -38.62 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -8.71 Total: 15.31 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 0.45 Total: 7.54 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.43 Total: -54.84 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.23 Total: -28.42 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.77 -7.85 -38.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272892166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.086 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds