Wall clock time and date at job start Wed Apr 1 2020 01:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46992 * 2 1 4 4 C 1.52995 * 109.47259 * 120.00268 * 2 1 3 5 5 H 1.09008 * 109.47087 * 300.00011 * 4 2 1 6 6 C 1.53002 * 109.47259 * 180.02562 * 4 2 1 7 7 C 1.50697 * 109.47331 * 60.00008 * 4 2 1 8 8 O 1.21284 * 120.00155 * 0.02562 * 7 4 2 9 9 N 1.34780 * 120.00366 * 180.02562 * 7 4 2 10 10 C 1.46492 * 120.00248 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.47294 * 184.98612 * 10 9 7 12 12 H 1.08994 * 109.50910 * 185.85169 * 11 10 9 13 13 C 1.53090 * 109.54319 * 65.73796 * 11 10 9 14 14 O 1.43016 * 109.26360 * 183.19653 * 13 11 10 15 15 C 1.43016 * 113.73721 * 58.66914 * 14 13 11 16 16 C 1.53100 * 109.25795 * 301.33335 * 15 14 13 17 17 N 1.47013 * 109.25888 * 56.84923 * 16 15 14 18 18 C 1.46895 * 111.00174 * 177.60700 * 17 16 15 19 19 C 1.50700 * 109.47116 * 287.56960 * 18 17 16 20 20 O 1.21284 * 119.99903 * 0.02562 * 19 18 17 21 21 N 1.34785 * 119.99823 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99772 * 179.72836 * 21 19 18 23 23 H 1.08007 * 119.99833 * 0.26918 * 22 21 19 24 24 C 1.38940 * 120.00194 * 180.27647 * 22 21 19 25 25 N 1.31409 * 120.00553 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 119.99937 * 359.97438 * 24 22 21 27 27 H 1.48493 * 109.47055 * 90.00035 * 26 24 22 28 28 H 1.48502 * 109.47101 * 210.00318 * 26 24 22 29 29 H 1.48504 * 109.46773 * 330.00270 * 26 24 22 30 30 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46967 * 299.99753 * 1 2 3 32 32 H 1.08999 * 109.47028 * 59.99906 * 1 2 3 33 33 H 1.09000 * 109.47376 * 240.00375 * 2 1 3 34 34 H 1.09001 * 109.46978 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47114 * 300.00437 * 3 2 1 36 36 H 1.09008 * 109.46976 * 60.00220 * 3 2 1 37 37 H 1.08999 * 109.47028 * 179.97438 * 6 4 2 38 38 H 1.09000 * 109.47376 * 300.00107 * 6 4 2 39 39 H 1.09001 * 109.47185 * 60.00227 * 6 4 2 40 40 H 0.97007 * 119.99752 * 359.97438 * 9 7 4 41 41 H 1.09000 * 109.46994 * 64.98833 * 10 9 7 42 42 H 1.08999 * 109.47240 * 304.98705 * 10 9 7 43 43 H 1.09003 * 109.50952 * 303.12960 * 13 11 10 44 44 H 1.09005 * 109.51002 * 63.25921 * 13 11 10 45 45 H 1.09000 * 109.50547 * 61.26321 * 15 14 13 46 46 H 1.08999 * 109.50786 * 181.35865 * 15 14 13 47 47 H 1.09002 * 109.50788 * 296.91479 * 16 15 14 48 48 H 1.08999 * 109.50760 * 176.77966 * 16 15 14 49 49 H 1.09001 * 109.47356 * 167.56736 * 18 17 16 50 50 H 1.09004 * 109.47104 * 47.57129 * 18 17 16 51 51 H 0.96993 * 120.00057 * 0.02562 * 21 19 18 52 52 H 0.96999 * 120.00375 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5701 -0.7207 1.2495 7 6 1.5378 -2.1421 1.2491 8 8 0.8408 -2.5389 0.3393 9 7 1.8629 -2.9719 2.2602 10 6 1.3742 -4.3529 2.2604 11 6 1.7789 -5.0369 3.5678 12 1 1.5074 -6.0917 3.5260 13 6 1.0559 -4.3690 4.7404 14 8 1.4945 -4.9630 5.9652 15 6 2.9040 -4.8581 6.1835 16 6 3.6458 -5.5310 5.0256 17 7 3.2312 -4.9111 3.7586 18 6 3.9633 -5.4906 2.6246 19 6 5.3909 -5.0085 2.6491 20 8 5.7620 -4.2565 3.5254 21 7 6.2555 -5.4137 1.6979 22 6 7.5527 -4.9707 1.7170 23 1 7.8830 -4.3003 2.4968 24 6 8.4426 -5.3839 0.7331 25 7 9.6859 -4.9588 0.7511 26 14 7.8715 -6.5437 -0.6153 27 1 7.3565 -5.7537 -1.7624 28 1 9.0127 -7.3815 -1.0638 29 1 6.7913 -7.4179 -0.0916 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 3.9334 -1.2342 2.1397 38 1 3.9338 -1.2342 0.3595 39 1 3.9330 0.3071 1.2498 40 1 2.4207 -2.6546 2.9877 41 1 1.8086 -4.8922 1.4187 42 1 0.2879 -4.3539 2.1710 43 1 1.2852 -3.3034 4.7501 44 1 -0.0197 -4.5095 4.6325 45 1 3.1870 -3.8068 6.2351 46 1 3.1650 -5.3518 7.1196 47 1 3.4040 -6.5937 5.0070 48 1 4.7201 -5.4037 5.1586 49 1 3.4915 -5.1821 1.6917 50 1 3.9457 -6.5780 2.6983 51 1 5.9587 -6.0154 0.9973 52 1 10.3072 -5.2476 0.0644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272892168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:06 Heat of formation + Delta-G solvation = -113.513072 kcal Electronic energy + Delta-G solvation = -32129.246334 eV Core-core repulsion = 27935.935868 eV Total energy + Delta-G solvation = -4193.310466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.49178 -39.62999 -38.21012 -36.51026 -35.75506 -34.51267 -33.83699 -31.84716 -31.71923 -30.40776 -29.20557 -27.42123 -26.64198 -25.66162 -24.27315 -23.68321 -22.65117 -21.22815 -19.91472 -19.62790 -19.39498 -18.37632 -17.31028 -16.82671 -16.45043 -15.92925 -15.84794 -15.30188 -15.03507 -15.00273 -14.88613 -14.49785 -14.33937 -14.14442 -13.83578 -13.67454 -13.57063 -13.29776 -13.17230 -12.61940 -12.51705 -12.32314 -12.18484 -12.11718 -12.03805 -11.98539 -11.81780 -11.51826 -11.44327 -11.30018 -11.03416 -10.98753 -10.73513 -10.63499 -10.58487 -10.56354 -10.02778 -9.77806 -9.59357 -9.49337 -8.94414 -8.70298 -8.23701 -8.16254 -6.35669 -3.87180 2.71291 2.99157 3.04235 3.12482 3.19589 3.61448 3.69522 3.77282 4.06450 4.52738 4.55492 4.60440 4.74255 4.77212 4.85716 4.95479 5.04873 5.14832 5.18281 5.22568 5.31365 5.32205 5.39064 5.42827 5.47779 5.53671 5.57716 5.60549 5.63695 5.68052 5.74192 5.82469 5.83194 5.85743 5.87608 5.95609 5.96766 6.04925 6.08454 6.27297 6.35043 6.37952 6.57185 6.90432 6.94939 7.09312 7.52938 7.61113 8.08823 8.31501 8.54853 8.90193 9.37623 9.77340 10.77243 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007543 B = 0.004351 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3711.321422 B = 6433.733412 C = 8956.139471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.075 4.075 3 C -0.150 4.150 4 C -0.105 4.105 5 H 0.093 0.907 6 C -0.148 4.148 7 C 0.518 3.482 8 O -0.545 6.545 9 N -0.716 5.716 10 C 0.127 3.873 11 C 0.031 3.969 12 H 0.064 0.936 13 C 0.074 3.926 14 O -0.387 6.387 15 C 0.065 3.935 16 C 0.021 3.979 17 N -0.506 5.506 18 C 0.035 3.965 19 C 0.455 3.545 20 O -0.559 6.559 21 N -0.590 5.590 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.044 3.956 25 N -0.880 5.880 26 Si 0.877 3.123 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.412 0.588 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.097 0.903 47 H 0.036 0.964 48 H 0.108 0.892 49 H 0.093 0.907 50 H 0.051 0.949 51 H 0.369 0.631 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.443 4.121 3.401 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.094 4.094 3 C -0.207 4.207 4 C -0.126 4.126 5 H 0.111 0.889 6 C -0.206 4.206 7 C 0.305 3.695 8 O -0.423 6.423 9 N -0.369 5.369 10 C 0.002 3.998 11 C -0.078 4.078 12 H 0.082 0.918 13 C -0.004 4.004 14 O -0.306 6.306 15 C -0.012 4.012 16 C -0.107 4.107 17 N -0.232 5.232 18 C -0.096 4.096 19 C 0.240 3.760 20 O -0.441 6.441 21 N -0.229 5.229 22 C -0.433 4.433 23 H 0.138 0.862 24 C -0.160 4.160 25 N -0.520 5.520 26 Si 0.703 3.297 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.196 1.196 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.249 0.751 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.081 0.919 46 H 0.115 0.885 47 H 0.054 0.946 48 H 0.126 0.874 49 H 0.111 0.889 50 H 0.069 0.931 51 H 0.202 0.798 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.467 4.744 3.425 19.372 hybrid contribution 0.143 -1.685 -1.158 2.049 sum -18.324 3.059 2.267 18.715 Atomic orbital electron populations 1.22066 0.94964 1.03860 1.00594 1.20890 0.96221 0.95338 0.96970 1.21929 1.01427 0.95740 1.01614 1.21375 0.97915 0.92583 1.00718 0.88887 1.21853 0.92183 1.03041 1.03497 1.20687 0.79616 0.87803 0.81391 1.90608 1.38400 1.77463 1.35839 1.45944 1.53494 1.11476 1.25999 1.21319 0.99361 0.82738 0.96355 1.22661 0.89843 0.99540 0.95747 0.91808 1.22624 0.98233 0.96901 0.82631 1.87965 1.23666 1.79760 1.39185 1.22702 0.79859 1.01103 0.97520 1.22879 1.03054 0.95753 0.88990 1.61759 1.01984 1.57410 1.02036 1.22031 0.95099 0.97492 0.94950 1.19527 0.86039 0.85762 0.84655 1.90533 1.78221 1.38101 1.37269 1.42217 1.10965 1.43967 1.25798 1.19395 0.83340 1.27491 1.13062 0.86241 1.25014 0.95256 0.97874 0.97817 1.69612 1.03579 1.44061 1.34741 0.86717 0.78922 0.81257 0.82765 1.19564 1.20136 1.19600 0.89947 0.93707 0.93293 0.90628 0.92128 0.92668 0.92794 0.91353 0.91951 0.91253 0.75116 0.91238 0.90590 0.92222 0.88551 0.91882 0.88521 0.94585 0.87406 0.88861 0.93064 0.79815 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.87 37.16 0.33 -1.38 16 2 C -0.08 -0.83 2.15 -90.62 -0.19 -1.02 16 3 C -0.15 -1.37 8.84 37.16 0.33 -1.04 16 4 C -0.10 -1.16 2.32 -91.77 -0.21 -1.37 16 5 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 6 C -0.15 -1.78 8.74 37.16 0.32 -1.45 16 7 C 0.52 6.75 6.86 -10.99 -0.08 6.67 16 8 O -0.54 -8.53 13.65 5.55 0.08 -8.46 16 9 N -0.72 -8.47 4.94 -60.30 -0.30 -8.77 16 10 C 0.13 1.41 4.72 -4.05 -0.02 1.39 16 11 C 0.03 0.34 2.25 -67.60 -0.15 0.19 16 12 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 13 C 0.07 0.75 6.21 37.20 0.23 0.98 16 14 O -0.39 -4.70 10.83 -35.23 -0.38 -5.08 16 15 C 0.06 0.77 7.01 37.21 0.26 1.03 16 16 C 0.02 0.29 5.31 -3.71 -0.02 0.27 16 17 N -0.51 -6.96 3.49 -227.78 -0.79 -7.75 16 18 C 0.04 0.55 5.30 -4.98 -0.03 0.53 16 19 C 0.45 9.59 7.51 -10.98 -0.08 9.51 16 20 O -0.56 -13.60 14.44 5.55 0.08 -13.52 16 21 N -0.59 -13.50 5.09 -10.96 -0.06 -13.56 16 22 C -0.30 -8.31 10.16 -14.94 -0.15 -8.46 16 23 H 0.12 3.72 7.39 -52.48 -0.39 3.34 16 24 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 25 N -0.88 -25.22 13.96 55.49 0.77 -24.45 16 26 Si 0.88 19.19 27.74 -169.99 -4.71 14.48 16 27 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 30 H 0.08 1.07 5.51 -51.93 -0.29 0.78 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 37 H 0.07 0.89 7.57 -51.93 -0.39 0.50 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.73 6.43 -51.93 -0.33 0.39 16 40 H 0.41 4.92 6.85 -40.82 -0.28 4.64 16 41 H 0.07 0.84 6.38 -51.93 -0.33 0.51 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.61 7.28 -51.93 -0.38 0.23 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.11 1.79 6.43 -51.93 -0.33 1.46 16 49 H 0.09 1.36 5.64 -51.93 -0.29 1.07 16 50 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 51 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 52 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 400.44 15.07 6.03 6.03 Total: -1.00 -31.57 400.44 -7.50 -39.07 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -8.67 Total: 15.08 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 0.44 Total: 6.92 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.37 Total: -54.53 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.23 Total: -27.05 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.57 -7.50 -39.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272892168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.441 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds