Wall clock time and date at job start Wed Apr 1 2020 01:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47605 * 2 1 4 4 C 1.53001 * 109.46835 * 120.00174 * 2 1 3 5 5 H 1.08997 * 109.47469 * 299.99493 * 4 2 1 6 6 C 1.53002 * 109.47010 * 179.97438 * 4 2 1 7 7 C 1.50703 * 109.47354 * 60.00089 * 4 2 1 8 8 O 1.21282 * 119.99712 * 359.97438 * 7 4 2 9 9 N 1.34773 * 120.00303 * 179.97438 * 7 4 2 10 10 C 1.46497 * 120.00186 * 179.97438 * 9 7 4 11 11 C 1.52999 * 109.47049 * 184.85694 * 10 9 7 12 12 H 1.09004 * 109.54111 * 174.36042 * 11 10 9 13 13 C 1.53096 * 109.50450 * 294.46507 * 11 10 9 14 14 O 1.43020 * 109.25750 * 176.78813 * 13 11 10 15 15 C 1.43012 * 113.73387 * 301.32566 * 14 13 11 16 16 C 1.53100 * 109.25842 * 58.67595 * 15 14 13 17 17 N 1.47007 * 109.51132 * 54.24693 * 11 10 9 18 18 C 1.46901 * 110.99880 * 57.67322 * 17 11 10 19 19 C 1.50705 * 109.47235 * 197.56370 * 18 17 11 20 20 O 1.21302 * 119.99754 * 359.97438 * 19 18 17 21 21 N 1.34768 * 120.00137 * 180.02562 * 19 18 17 22 22 C 1.37105 * 120.00136 * 179.72492 * 21 19 18 23 23 H 1.08003 * 119.99486 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00037 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00441 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99928 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46788 * 60.00338 * 26 24 22 28 28 H 1.48498 * 109.47207 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47068 * 300.00153 * 26 24 22 30 30 H 1.08999 * 109.46959 * 59.99548 * 1 2 3 31 31 H 1.08996 * 109.47317 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46654 * 300.00403 * 1 2 3 33 33 H 1.09001 * 109.47146 * 240.00102 * 2 1 3 34 34 H 1.09002 * 109.47749 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47331 * 300.00224 * 3 2 1 36 36 H 1.09001 * 109.46785 * 59.99881 * 3 2 1 37 37 H 1.09004 * 109.46698 * 60.00013 * 6 4 2 38 38 H 1.08995 * 109.47320 * 179.97438 * 6 4 2 39 39 H 1.09001 * 109.47486 * 300.00243 * 6 4 2 40 40 H 0.97001 * 119.99522 * 359.97438 * 9 7 4 41 41 H 1.08997 * 109.47463 * 64.85260 * 10 9 7 42 42 H 1.09001 * 109.47024 * 304.85294 * 10 9 7 43 43 H 1.08991 * 109.51003 * 56.84800 * 13 11 10 44 44 H 1.09008 * 109.54375 * 296.73919 * 13 11 10 45 45 H 1.08997 * 109.51026 * 298.73483 * 15 14 13 46 46 H 1.09010 * 109.50417 * 178.60814 * 15 14 13 47 47 H 1.09001 * 109.50250 * 183.21289 * 16 15 14 48 48 H 1.08998 * 109.54477 * 63.10362 * 16 15 14 49 49 H 1.08993 * 109.47515 * 77.56269 * 18 17 11 50 50 H 1.09002 * 109.47427 * 317.55633 * 18 17 11 51 51 H 0.97000 * 120.00426 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00274 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7219 1.2490 7 6 1.5376 -2.1421 1.2492 8 8 0.8400 -2.5386 0.3398 9 7 1.8636 -2.9722 2.2597 10 6 1.3748 -4.3532 2.2600 11 6 1.7833 -5.0386 3.5655 12 1 1.3362 -6.0316 3.6113 13 6 3.3082 -5.1613 3.6230 14 8 3.6884 -5.7340 4.8772 15 6 3.2519 -4.9790 6.0106 16 6 1.7264 -4.8545 5.9773 17 7 1.3179 -4.2375 4.7070 18 6 -0.1379 -4.0475 4.6581 19 6 -0.5253 -2.9010 5.5562 20 8 0.3275 -2.3014 6.1763 21 7 -1.8193 -2.5425 5.6711 22 6 -2.1724 -1.5030 6.4924 23 1 -1.4134 -0.9718 7.0477 24 6 -3.5065 -1.1330 6.6105 25 7 -4.4300 -1.7797 5.9353 26 14 -3.9876 0.2828 7.7301 27 1 -3.3098 1.5241 7.2774 28 1 -5.4590 0.4762 7.6792 29 1 -3.5763 -0.0260 9.1232 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1302 1.4424 0.0005 35 1 1.6769 1.9563 -0.8899 36 1 1.6768 1.9562 0.8900 37 1 3.9337 0.3057 1.2488 38 1 3.9333 -1.2353 2.1391 39 1 3.9330 -1.2359 0.3590 40 1 2.4218 -2.6551 2.9869 41 1 1.8066 -4.8917 1.4164 42 1 0.2882 -4.3541 2.1737 43 1 3.7569 -4.1731 3.5232 44 1 3.6534 -5.8015 2.8110 45 1 3.6990 -3.9854 5.9803 46 1 3.5557 -5.4877 6.9256 47 1 1.3939 -4.2318 6.8079 48 1 1.2777 -5.8442 6.0621 49 1 -0.6346 -4.9571 4.9956 50 1 -0.4413 -3.8260 3.6349 51 1 -2.5014 -3.0221 5.1755 52 1 -5.3613 -1.5212 6.0174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272892169.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:09 Heat of formation + Delta-G solvation = -120.070901 kcal Electronic energy + Delta-G solvation = -32103.370805 eV Core-core repulsion = 27909.775970 eV Total energy + Delta-G solvation = -4193.594835 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41443 -39.54782 -38.00854 -36.44562 -35.67194 -34.44346 -33.75849 -31.79337 -31.26742 -30.40709 -29.04266 -27.33138 -26.56113 -25.56275 -24.31659 -23.81448 -22.59380 -21.16828 -19.88238 -19.57183 -19.18795 -17.90227 -17.31758 -16.67230 -16.37595 -15.89249 -15.84251 -15.25973 -15.08506 -14.72171 -14.69683 -14.49860 -14.23620 -14.11610 -13.82694 -13.61878 -13.46777 -13.37072 -13.24845 -12.58905 -12.27524 -12.19747 -12.15602 -12.07957 -11.99536 -11.70862 -11.54957 -11.53219 -11.38272 -11.14705 -10.93800 -10.85529 -10.68729 -10.54301 -10.51597 -10.46601 -10.23921 -9.70849 -9.50082 -9.41486 -8.87248 -8.56854 -8.05197 -7.97224 -6.43351 -3.84622 2.80022 3.17735 3.24058 3.25830 3.28766 3.70765 3.82421 3.87912 4.18638 4.61934 4.63049 4.65536 4.81083 4.86418 4.95442 5.00556 5.17352 5.20290 5.21009 5.28448 5.33080 5.37663 5.42385 5.45273 5.51633 5.59785 5.63781 5.70501 5.73028 5.75494 5.77796 5.82044 5.87561 5.91635 5.99894 6.01696 6.08939 6.09697 6.21211 6.22783 6.42889 6.46773 6.71304 7.01917 7.04102 7.16822 7.52527 7.67212 8.03151 8.39438 8.58867 9.15606 9.51976 10.03120 10.74173 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007139 B = 0.004429 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3921.340540 B = 6319.753060 C = 9143.435547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.072 4.072 3 C -0.150 4.150 4 C -0.109 4.109 5 H 0.100 0.900 6 C -0.144 4.144 7 C 0.520 3.480 8 O -0.543 6.543 9 N -0.714 5.714 10 C 0.127 3.873 11 C 0.031 3.969 12 H 0.064 0.936 13 C 0.073 3.927 14 O -0.387 6.387 15 C 0.065 3.935 16 C 0.022 3.978 17 N -0.505 5.505 18 C 0.039 3.961 19 C 0.446 3.554 20 O -0.579 6.579 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.024 3.976 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.409 0.591 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.035 0.965 49 H 0.050 0.950 50 H 0.092 0.908 51 H 0.391 0.609 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.403 -3.456 -8.835 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.091 4.091 3 C -0.207 4.207 4 C -0.130 4.130 5 H 0.118 0.882 6 C -0.201 4.201 7 C 0.306 3.694 8 O -0.421 6.421 9 N -0.367 5.367 10 C 0.002 3.998 11 C -0.078 4.078 12 H 0.081 0.919 13 C -0.004 4.004 14 O -0.306 6.306 15 C -0.012 4.012 16 C -0.106 4.106 17 N -0.230 5.230 18 C -0.092 4.092 19 C 0.231 3.769 20 O -0.463 6.463 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.245 0.755 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.123 0.877 48 H 0.053 0.947 49 H 0.068 0.932 50 H 0.110 0.890 51 H 0.224 0.776 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.586 -3.029 -9.069 17.441 hybrid contribution -1.291 -0.018 0.725 1.481 sum 13.296 -3.047 -8.344 15.990 Atomic orbital electron populations 1.22077 0.94552 1.04173 1.00971 1.20860 0.96662 0.95106 0.96457 1.21934 1.00821 0.95996 1.01975 1.21398 0.97174 0.93042 1.01429 0.88183 1.21819 0.93234 1.02921 1.02162 1.20614 0.79750 0.87518 0.81486 1.90613 1.37943 1.77196 1.36389 1.45880 1.53739 1.11687 1.25377 1.21325 1.00257 0.82480 0.95695 1.22653 0.97400 0.96210 0.91566 0.91865 1.22630 0.92086 0.99093 0.86601 1.87960 1.77595 1.50857 1.14165 1.22700 0.93320 0.96543 0.88599 1.22846 0.96079 0.97944 0.93695 1.61767 1.12806 1.47243 1.01207 1.21987 0.87514 0.98204 1.01454 1.19637 0.83460 0.87247 0.86573 1.90494 1.49379 1.56772 1.49646 1.41856 1.05907 1.30978 1.41211 1.19613 0.92791 1.09177 1.21313 0.88016 1.25253 0.95444 0.99004 0.98124 1.69603 1.01609 1.41235 1.41715 0.85939 0.77233 0.80990 0.80177 1.19905 1.20962 1.19935 0.93318 0.89864 0.93173 0.90929 0.92540 0.92640 0.92497 0.91200 0.92197 0.92311 0.75485 0.91021 0.90745 0.92375 0.88543 0.91954 0.88608 0.87675 0.94653 0.93207 0.89016 0.77576 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.87 37.16 0.33 -1.85 16 2 C -0.07 -0.84 2.15 -90.62 -0.19 -1.04 16 3 C -0.15 -1.45 8.84 37.16 0.33 -1.12 16 4 C -0.11 -1.28 2.32 -91.77 -0.21 -1.50 16 5 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 6 C -0.14 -1.31 8.74 37.16 0.32 -0.98 16 7 C 0.52 7.24 6.86 -10.99 -0.08 7.16 16 8 O -0.54 -9.09 13.65 5.56 0.08 -9.02 16 9 N -0.71 -8.97 5.01 -60.30 -0.30 -9.27 16 10 C 0.13 1.52 4.74 -4.04 -0.02 1.50 16 11 C 0.03 0.37 2.25 -67.60 -0.15 0.21 16 12 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 13 C 0.07 0.78 6.20 37.21 0.23 1.01 16 14 O -0.39 -4.83 10.83 -35.23 -0.38 -5.21 16 15 C 0.07 0.80 7.01 37.21 0.26 1.06 16 16 C 0.02 0.32 5.31 -3.71 -0.02 0.30 16 17 N -0.50 -7.44 3.61 -227.78 -0.82 -8.26 16 18 C 0.04 0.67 5.32 -4.97 -0.03 0.65 16 19 C 0.45 10.04 7.52 -10.99 -0.08 9.96 16 20 O -0.58 -14.60 14.57 5.54 0.08 -14.52 16 21 N -0.56 -13.98 5.29 -10.96 -0.06 -14.03 16 22 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 23 H 0.10 2.90 7.16 -52.48 -0.38 2.52 16 24 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 25 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 26 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.33 5.51 -51.93 -0.29 1.05 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 38 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.41 5.02 6.68 -40.82 -0.27 4.75 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.01 6.34 -51.93 -0.33 0.68 16 43 H 0.06 0.60 7.05 -51.93 -0.37 0.23 16 44 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 47 H 0.11 1.82 6.57 -51.93 -0.34 1.47 16 48 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 49 H 0.05 0.80 8.02 -51.93 -0.42 0.38 16 50 H 0.09 1.52 5.60 -51.93 -0.29 1.23 16 51 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 52 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -31.13 403.52 -7.86 -39.00 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -8.69 Total: 15.52 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 0.45 Total: 7.56 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.46 Total: -55.26 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.22 Total: -28.75 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.13 -7.86 -39.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272892169.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.074 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds