Wall clock time and date at job start Wed Apr 1 2020 01:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47605 * 2 1 4 4 C 1.53001 * 109.46835 * 120.00174 * 2 1 3 5 5 H 1.08997 * 109.47469 * 299.99493 * 4 2 1 6 6 C 1.53002 * 109.47010 * 179.97438 * 4 2 1 7 7 C 1.50703 * 109.47354 * 60.00089 * 4 2 1 8 8 O 1.21282 * 119.99712 * 359.97438 * 7 4 2 9 9 N 1.34773 * 120.00303 * 179.97438 * 7 4 2 10 10 C 1.46497 * 120.00186 * 179.97438 * 9 7 4 11 11 C 1.52999 * 109.47049 * 184.85694 * 10 9 7 12 12 H 1.09004 * 109.54111 * 174.36042 * 11 10 9 13 13 C 1.53096 * 109.50450 * 294.46507 * 11 10 9 14 14 O 1.43020 * 109.25750 * 176.78813 * 13 11 10 15 15 C 1.43012 * 113.73387 * 301.32566 * 14 13 11 16 16 C 1.53100 * 109.25842 * 58.67595 * 15 14 13 17 17 N 1.47007 * 109.51132 * 54.24693 * 11 10 9 18 18 C 1.46901 * 110.99880 * 57.67322 * 17 11 10 19 19 C 1.50705 * 109.47235 * 197.56370 * 18 17 11 20 20 O 1.21302 * 119.99754 * 359.97438 * 19 18 17 21 21 N 1.34768 * 120.00137 * 180.02562 * 19 18 17 22 22 C 1.37105 * 120.00136 * 179.72492 * 21 19 18 23 23 H 1.08003 * 119.99486 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00037 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00441 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99928 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46788 * 60.00338 * 26 24 22 28 28 H 1.48498 * 109.47207 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47068 * 300.00153 * 26 24 22 30 30 H 1.08999 * 109.46959 * 59.99548 * 1 2 3 31 31 H 1.08996 * 109.47317 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46654 * 300.00403 * 1 2 3 33 33 H 1.09001 * 109.47146 * 240.00102 * 2 1 3 34 34 H 1.09002 * 109.47749 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47331 * 300.00224 * 3 2 1 36 36 H 1.09001 * 109.46785 * 59.99881 * 3 2 1 37 37 H 1.09004 * 109.46698 * 60.00013 * 6 4 2 38 38 H 1.08995 * 109.47320 * 179.97438 * 6 4 2 39 39 H 1.09001 * 109.47486 * 300.00243 * 6 4 2 40 40 H 0.97001 * 119.99522 * 359.97438 * 9 7 4 41 41 H 1.08997 * 109.47463 * 64.85260 * 10 9 7 42 42 H 1.09001 * 109.47024 * 304.85294 * 10 9 7 43 43 H 1.08991 * 109.51003 * 56.84800 * 13 11 10 44 44 H 1.09008 * 109.54375 * 296.73919 * 13 11 10 45 45 H 1.08997 * 109.51026 * 298.73483 * 15 14 13 46 46 H 1.09010 * 109.50417 * 178.60814 * 15 14 13 47 47 H 1.09001 * 109.50250 * 183.21289 * 16 15 14 48 48 H 1.08998 * 109.54477 * 63.10362 * 16 15 14 49 49 H 1.08993 * 109.47515 * 77.56269 * 18 17 11 50 50 H 1.09002 * 109.47427 * 317.55633 * 18 17 11 51 51 H 0.97000 * 120.00426 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00274 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7219 1.2490 7 6 1.5376 -2.1421 1.2492 8 8 0.8400 -2.5386 0.3398 9 7 1.8636 -2.9722 2.2597 10 6 1.3748 -4.3532 2.2600 11 6 1.7833 -5.0386 3.5655 12 1 1.3362 -6.0316 3.6113 13 6 3.3082 -5.1613 3.6230 14 8 3.6884 -5.7340 4.8772 15 6 3.2519 -4.9790 6.0106 16 6 1.7264 -4.8545 5.9773 17 7 1.3179 -4.2375 4.7070 18 6 -0.1379 -4.0475 4.6581 19 6 -0.5253 -2.9010 5.5562 20 8 0.3275 -2.3014 6.1763 21 7 -1.8193 -2.5425 5.6711 22 6 -2.1724 -1.5030 6.4924 23 1 -1.4134 -0.9718 7.0477 24 6 -3.5065 -1.1330 6.6105 25 7 -4.4300 -1.7797 5.9353 26 14 -3.9876 0.2828 7.7301 27 1 -3.3098 1.5241 7.2774 28 1 -5.4590 0.4762 7.6792 29 1 -3.5763 -0.0260 9.1232 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1302 1.4424 0.0005 35 1 1.6769 1.9563 -0.8899 36 1 1.6768 1.9562 0.8900 37 1 3.9337 0.3057 1.2488 38 1 3.9333 -1.2353 2.1391 39 1 3.9330 -1.2359 0.3590 40 1 2.4218 -2.6551 2.9869 41 1 1.8066 -4.8917 1.4164 42 1 0.2882 -4.3541 2.1737 43 1 3.7569 -4.1731 3.5232 44 1 3.6534 -5.8015 2.8110 45 1 3.6990 -3.9854 5.9803 46 1 3.5557 -5.4877 6.9256 47 1 1.3939 -4.2318 6.8079 48 1 1.2777 -5.8442 6.0621 49 1 -0.6346 -4.9571 4.9956 50 1 -0.4413 -3.8260 3.6349 51 1 -2.5014 -3.0221 5.1755 52 1 -5.3613 -1.5212 6.0174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272892169.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:08 Heat of formation + Delta-G solvation = -142.813583 kcal Electronic energy + Delta-G solvation = -32104.357002 eV Core-core repulsion = 27909.775970 eV Total energy + Delta-G solvation = -4194.581031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51703 -40.69678 -39.69283 -37.44446 -36.79110 -35.99365 -35.33470 -33.26774 -32.79225 -31.33490 -30.37376 -28.27954 -27.66661 -27.07107 -25.36269 -25.22716 -23.63765 -22.18424 -21.24063 -20.68775 -20.56403 -19.87451 -18.38491 -17.94925 -17.46982 -17.31191 -16.93226 -16.55511 -16.31508 -16.19636 -15.82280 -15.73196 -15.58914 -15.34859 -15.15097 -14.84781 -14.68012 -14.58406 -14.24274 -13.92705 -13.63698 -13.47455 -13.16578 -13.11014 -13.03987 -12.99429 -12.88616 -12.80501 -12.43679 -12.40944 -12.38712 -12.14590 -12.11857 -11.94889 -11.61300 -11.53524 -11.45844 -11.43606 -10.77574 -10.50410 -10.26548 -10.00594 -9.93936 -9.36206 -8.46220 -5.94951 1.38526 1.40280 1.51013 1.70992 2.05265 2.20029 2.30195 2.59586 2.88719 3.20038 3.32865 3.66708 3.70042 3.71862 3.85724 3.95349 3.96932 4.13415 4.21954 4.25498 4.29006 4.33099 4.43761 4.47461 4.48296 4.57338 4.62052 4.63423 4.72905 4.75687 4.80126 4.83030 4.90944 4.93867 4.97012 5.00438 5.04031 5.09139 5.20534 5.32422 5.40064 5.43337 5.51432 5.61541 5.74885 5.95218 6.04105 6.15782 6.59431 6.61492 7.12757 7.32217 7.56338 8.11039 8.71066 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007139 B = 0.004429 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3921.340540 B = 6319.753060 C = 9143.435547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.070 4.070 3 C -0.145 4.145 4 C -0.108 4.108 5 H 0.088 0.912 6 C -0.138 4.138 7 C 0.513 3.487 8 O -0.575 6.575 9 N -0.709 5.709 10 C 0.128 3.872 11 C 0.039 3.961 12 H 0.074 0.926 13 C 0.073 3.927 14 O -0.392 6.392 15 C 0.073 3.927 16 C 0.024 3.976 17 N -0.514 5.514 18 C 0.054 3.946 19 C 0.447 3.553 20 O -0.606 6.606 21 N -0.577 5.577 22 C -0.328 4.328 23 H 0.082 0.918 24 C -0.014 4.014 25 N -0.923 5.923 26 Si 0.991 3.009 27 H -0.272 1.272 28 H -0.273 1.273 29 H -0.270 1.270 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.411 0.589 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.124 0.876 45 H 0.058 0.942 46 H 0.115 0.885 47 H 0.072 0.928 48 H 0.042 0.958 49 H 0.064 0.936 50 H 0.099 0.901 51 H 0.392 0.608 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.069 -3.673 -9.311 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.089 4.089 3 C -0.202 4.202 4 C -0.129 4.129 5 H 0.106 0.894 6 C -0.195 4.195 7 C 0.301 3.699 8 O -0.456 6.456 9 N -0.361 5.361 10 C 0.004 3.996 11 C -0.070 4.070 12 H 0.091 0.909 13 C -0.004 4.004 14 O -0.310 6.310 15 C -0.004 4.004 16 C -0.104 4.104 17 N -0.240 5.240 18 C -0.077 4.077 19 C 0.234 3.766 20 O -0.491 6.491 21 N -0.214 5.214 22 C -0.458 4.458 23 H 0.100 0.900 24 C -0.214 4.214 25 N -0.564 5.564 26 Si 0.815 3.185 27 H -0.197 1.197 28 H -0.198 1.198 29 H -0.195 1.195 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.248 0.752 41 H 0.109 0.891 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.142 0.858 45 H 0.076 0.924 46 H 0.133 0.867 47 H 0.090 0.910 48 H 0.060 0.940 49 H 0.082 0.918 50 H 0.117 0.883 51 H 0.225 0.775 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.276 -3.268 -9.541 19.148 hybrid contribution -1.774 -0.003 0.850 1.967 sum 14.503 -3.271 -8.691 17.221 Atomic orbital electron populations 1.22039 0.96376 1.02324 1.00897 1.20849 0.95082 0.96589 0.96339 1.21898 1.01993 0.94242 1.02091 1.21424 0.99205 0.91435 1.00882 0.89350 1.21806 0.90756 1.04159 1.02782 1.21044 0.79260 0.88408 0.81198 1.90602 1.39341 1.77948 1.37672 1.45888 1.53279 1.11920 1.24969 1.21358 0.99321 0.82388 0.96544 1.22700 0.98454 0.95961 0.89874 0.90853 1.22797 0.90781 1.00091 0.86706 1.87967 1.77441 1.51042 1.14582 1.22658 0.91334 0.96785 0.89621 1.22789 0.97889 0.97307 0.92429 1.61713 1.10982 1.48764 1.02511 1.21763 0.89538 0.96220 1.00158 1.20573 0.82366 0.87657 0.85983 1.90469 1.49969 1.57996 1.50711 1.41950 1.06845 1.31066 1.41586 1.19602 0.93010 1.10543 1.22596 0.90032 1.26027 0.94970 1.01147 0.99222 1.69678 1.01895 1.42315 1.42561 0.85017 0.77293 0.77888 0.78339 1.19708 1.19792 1.19504 0.92248 0.92519 0.94338 0.91112 0.90626 0.91933 0.92995 0.89665 0.91520 0.91732 0.75211 0.89066 0.92525 0.91943 0.85824 0.92355 0.86695 0.90959 0.93984 0.91785 0.88340 0.77495 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 8.87 71.98 0.64 -3.79 16 2 C -0.07 -1.59 2.15 -10.79 -0.02 -1.62 16 3 C -0.15 -2.57 8.84 71.98 0.64 -1.94 16 4 C -0.11 -2.48 2.32 -11.54 -0.03 -2.51 16 5 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 6 C -0.14 -2.22 8.74 71.98 0.63 -1.59 16 7 C 0.51 14.18 6.86 87.66 0.60 14.78 16 8 O -0.58 -19.45 13.65 -3.04 -0.04 -19.50 16 9 N -0.71 -17.18 5.01 -463.07 -2.32 -19.50 16 10 C 0.13 2.88 4.74 86.38 0.41 3.29 16 11 C 0.04 0.83 2.25 44.93 0.10 0.93 16 12 H 0.07 1.49 8.14 -2.38 -0.02 1.48 16 13 C 0.07 1.34 6.20 72.01 0.45 1.79 16 14 O -0.39 -8.67 10.83 -148.98 -1.61 -10.28 16 15 C 0.07 1.66 7.01 72.02 0.50 2.16 16 16 C 0.02 0.67 5.31 86.32 0.46 1.13 16 17 N -0.51 -14.70 3.61 -874.56 -3.16 -17.85 16 18 C 0.05 1.85 5.32 85.56 0.46 2.30 16 19 C 0.45 20.61 7.52 87.66 0.66 21.27 16 20 O -0.61 -31.40 14.57 -3.10 -0.05 -31.44 16 21 N -0.58 -29.51 5.29 -306.98 -1.62 -31.13 16 22 C -0.33 -18.43 9.68 84.04 0.81 -17.61 16 23 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 24 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 25 N -0.92 -50.51 13.05 21.66 0.28 -50.22 16 26 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.89 5.51 -2.39 -0.01 1.88 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 34 H 0.07 1.05 6.43 -2.39 -0.02 1.04 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.13 6.43 -2.39 -0.02 1.11 16 38 H 0.07 0.99 7.56 -2.39 -0.02 0.97 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 40 H 0.41 9.64 6.68 -92.71 -0.62 9.02 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.50 6.34 -2.39 -0.02 1.49 16 43 H 0.06 1.11 7.05 -2.39 -0.02 1.10 16 44 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.07 2.54 6.57 -2.39 -0.02 2.52 16 48 H 0.04 1.12 8.13 -2.39 -0.02 1.10 16 49 H 0.06 2.02 8.02 -2.39 -0.02 2.00 16 50 H 0.10 3.26 5.60 -2.39 -0.01 3.24 16 51 H 0.39 19.57 7.90 -92.71 -0.73 18.84 16 52 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -68.51 403.52 -0.13 -68.65 By element: Atomic # 1 Polarization: 48.41 SS G_CDS: -0.42 Total: 47.99 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 6.77 Total: 18.30 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -6.82 Total: -118.71 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: -1.70 Total: -61.22 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -68.51 -0.13 -68.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272892169.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.165 kcal (2) G-P(sol) polarization free energy of solvation -68.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds