Wall clock time and date at job start Wed Apr 1 2020 00:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.70459 * 2 1 4 4 C 1.53197 * 109.59596 * 239.63964 * 2 1 3 5 5 C 1.53044 * 109.31046 * 294.86965 * 4 2 1 6 6 H 1.08997 * 109.45866 * 58.62919 * 5 4 2 7 7 N 1.46902 * 109.45464 * 178.60257 * 5 4 2 8 8 C 1.46906 * 110.99706 * 205.02602 * 7 5 4 9 9 C 1.50697 * 109.47189 * 180.02562 * 8 7 5 10 10 O 1.21293 * 119.99873 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00335 * 180.02562 * 9 8 7 12 12 C 1.37099 * 120.00244 * 179.97438 * 11 9 8 13 13 H 1.07995 * 120.00005 * 0.02562 * 12 11 9 14 14 C 1.38956 * 120.00083 * 179.97438 * 12 11 9 15 15 N 1.31414 * 119.99836 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99932 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47119 * 60.00604 * 16 14 12 18 18 H 1.48497 * 109.47039 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47125 * 300.00064 * 16 14 12 20 20 C 1.53040 * 109.52809 * 298.61259 * 5 4 2 21 21 C 1.53192 * 109.30964 * 61.37360 * 20 5 4 22 22 N 1.46919 * 108.77951 * 305.36499 * 21 20 5 23 23 C 1.34777 * 120.63206 * 233.62912 * 22 21 20 24 24 O 1.21276 * 120.00124 * 179.97438 * 23 22 21 25 25 C 1.50698 * 119.99785 * 359.97438 * 23 22 21 26 26 C 1.53005 * 109.47030 * 186.12020 * 25 23 22 27 27 C 1.53000 * 109.46709 * 60.28076 * 26 25 23 28 28 C 1.52998 * 109.47299 * 180.28127 * 26 25 23 29 29 O 1.42899 * 109.47125 * 300.28574 * 26 25 23 30 30 H 1.09004 * 109.47251 * 299.64522 * 1 2 3 31 31 H 1.09000 * 109.46854 * 59.64022 * 1 2 3 32 32 H 1.08995 * 109.47603 * 179.64030 * 1 2 3 33 33 H 1.09000 * 109.50594 * 174.91402 * 4 2 1 34 34 H 1.09001 * 109.48705 * 54.81546 * 4 2 1 35 35 H 1.00897 * 111.00055 * 328.97950 * 7 5 4 36 36 H 1.09001 * 109.46961 * 300.00202 * 8 7 5 37 37 H 1.09000 * 109.46892 * 59.99948 * 8 7 5 38 38 H 0.97003 * 119.99909 * 0.02562 * 11 9 8 39 39 H 0.96995 * 119.99666 * 179.97438 * 15 14 12 40 40 H 1.08994 * 109.49548 * 181.32327 * 20 5 4 41 41 H 1.09001 * 109.50116 * 301.39543 * 20 5 4 42 42 H 1.09003 * 109.58411 * 65.15182 * 21 20 5 43 43 H 1.08997 * 109.58640 * 185.43366 * 21 20 5 44 44 H 1.08997 * 109.47050 * 306.12229 * 25 23 22 45 45 H 1.08999 * 109.46851 * 66.12363 * 25 23 22 46 46 H 1.09007 * 109.47164 * 60.00414 * 27 26 25 47 47 H 1.09006 * 109.46760 * 179.97438 * 27 26 25 48 48 H 1.08998 * 109.47529 * 299.99572 * 27 26 25 49 49 H 1.09000 * 109.47007 * 62.41797 * 28 26 25 50 50 H 1.08998 * 109.47297 * 182.42165 * 28 26 25 51 51 H 1.08998 * 109.47033 * 302.42257 * 28 26 25 52 52 H 0.96697 * 114.00537 * 59.99450 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0438 -0.7295 -1.2453 5 6 1.6413 -2.2041 -1.1702 6 1 0.5564 -2.2812 -1.0992 7 7 2.1035 -2.8996 -2.3788 8 6 1.2823 -4.0873 -2.6491 9 6 1.7855 -4.7735 -3.8929 10 8 2.7345 -4.3177 -4.4952 11 7 1.1804 -5.8930 -4.3366 12 6 1.6378 -6.5169 -5.4685 13 1 2.4834 -6.1115 -6.0043 14 6 1.0143 -7.6714 -5.9257 15 7 -0.0143 -8.1650 -5.2734 16 14 1.6381 -8.5219 -7.4674 17 1 3.0514 -8.9321 -7.2690 18 1 0.8076 -9.7221 -7.7411 19 1 1.5507 -7.5873 -8.6180 20 6 2.2799 -2.8465 0.0634 21 6 1.7691 -2.1411 1.3236 22 7 2.0225 -0.6997 1.1945 23 6 2.6943 -0.0319 2.1532 24 8 2.8975 1.1578 2.0346 25 6 3.1931 -0.7637 3.3725 26 6 3.7809 0.2412 4.3654 27 6 2.6981 1.2381 4.7833 28 6 4.2936 -0.5024 5.6004 29 8 4.8622 0.9431 3.7489 30 1 -0.3634 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8868 32 1 -0.3634 -1.0276 -0.0065 33 1 3.1300 -0.6507 -1.2911 34 1 1.6080 -0.2783 -2.1367 35 1 2.1120 -2.2775 -3.1730 36 1 1.3468 -4.7735 -1.8047 37 1 0.2448 -3.7863 -2.7942 38 1 0.4207 -6.2569 -3.8556 39 1 -0.4498 -8.9707 -5.5928 40 1 2.0121 -3.9022 0.1035 41 1 3.3639 -2.7480 0.0049 42 1 0.6985 -2.3156 1.4315 43 1 2.2925 -2.5294 2.1973 44 1 2.3650 -1.2955 3.8411 45 1 3.9631 -1.4769 3.0786 46 1 1.8732 0.7027 5.2536 47 1 3.1167 1.9537 5.4911 48 1 2.3328 1.7679 3.9036 49 1 5.0947 -1.1817 5.3089 50 1 4.6731 0.2169 6.3261 51 1 3.4782 -1.0722 6.0459 52 1 4.6095 1.4382 2.9577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277741165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:02 Heat of formation + Delta-G solvation = -155.665794 kcal Electronic energy + Delta-G solvation = -30688.438211 eV Core-core repulsion = 26493.299866 eV Total energy + Delta-G solvation = -4195.138345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.75772 -40.28397 -39.62258 -38.00168 -36.40106 -35.77527 -34.14246 -33.29896 -33.23332 -32.16034 -29.56096 -28.80527 -28.18128 -27.74228 -25.84840 -24.66729 -23.33617 -22.07998 -21.15458 -20.95851 -19.92504 -19.40122 -18.48108 -17.74153 -17.58448 -17.01101 -16.73627 -16.57474 -16.36327 -16.23242 -15.77017 -15.64599 -15.41252 -15.21707 -14.93189 -14.62669 -14.40366 -14.09729 -13.94990 -13.81076 -13.50094 -13.43460 -13.32443 -13.11177 -13.01751 -12.97120 -12.83229 -12.80237 -12.75159 -12.43969 -12.42675 -12.38175 -12.13086 -12.10484 -11.92478 -11.63971 -11.50184 -11.24332 -10.89537 -10.64692 -10.33159 -10.01338 -9.70311 -9.30786 -8.46562 -5.95068 1.39776 1.41996 1.52503 1.54359 1.93637 2.06028 2.29216 2.89513 3.20818 3.35916 3.40927 3.50118 3.69043 3.77620 3.83530 4.00459 4.07043 4.17745 4.20261 4.25487 4.30694 4.42130 4.46918 4.51566 4.53025 4.56020 4.60086 4.63020 4.70221 4.72555 4.77759 4.90168 4.93015 4.97983 5.01741 5.05558 5.07162 5.12404 5.24218 5.28900 5.40666 5.42324 5.42813 5.57037 5.91890 6.14266 6.36935 6.40162 6.60735 6.77508 7.13061 7.16590 7.56928 8.12644 8.70429 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.001878 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.946947 B =14908.806307 C =15250.452797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 H 0.086 0.914 4 C -0.124 4.124 5 C 0.090 3.910 6 H 0.063 0.937 7 N -0.681 5.681 8 C 0.068 3.932 9 C 0.436 3.564 10 O -0.626 6.626 11 N -0.572 5.572 12 C -0.335 4.335 13 H 0.077 0.923 14 C -0.012 4.012 15 N -0.919 5.919 16 Si 0.991 3.009 17 H -0.273 1.273 18 H -0.270 1.270 19 H -0.273 1.273 20 C -0.123 4.123 21 C 0.106 3.894 22 N -0.600 5.600 23 C 0.516 3.484 24 O -0.578 6.578 25 C -0.166 4.166 26 C 0.134 3.866 27 C -0.182 4.182 28 C -0.138 4.138 29 O -0.587 6.587 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.343 0.657 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.131 0.869 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.062 0.938 50 H 0.059 0.941 51 H 0.095 0.905 52 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 13.286 22.354 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.039 3.961 3 H 0.104 0.896 4 C -0.162 4.162 5 C -0.019 4.019 6 H 0.081 0.919 7 N -0.314 5.314 8 C -0.064 4.064 9 C 0.224 3.776 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.464 4.464 13 H 0.095 0.905 14 C -0.212 4.212 15 N -0.559 5.559 16 Si 0.815 3.185 17 H -0.198 1.198 18 H -0.194 1.194 19 H -0.198 1.198 20 C -0.162 4.162 21 C -0.016 4.016 22 N -0.332 5.332 23 C 0.307 3.693 24 O -0.460 6.460 25 C -0.205 4.205 26 C 0.094 3.906 27 C -0.240 4.240 28 C -0.196 4.196 29 O -0.399 6.399 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.162 0.838 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.130 0.870 44 H 0.149 0.851 45 H 0.129 0.871 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.078 0.922 51 H 0.114 0.886 52 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.228 13.398 22.655 26.349 hybrid contribution -1.043 -0.005 -1.781 2.064 sum -2.272 13.393 20.873 24.905 Atomic orbital electron populations 1.22104 0.93350 1.03134 1.02787 1.21085 0.95093 0.96563 0.83408 0.89601 1.22027 1.01436 0.94639 0.98117 1.21614 0.97983 0.92282 0.90051 0.91907 1.60112 1.55082 1.09097 1.07074 1.21567 0.95462 0.94024 0.95378 1.20956 0.85344 0.82812 0.88517 1.90498 1.31649 1.67523 1.61568 1.41923 1.30502 1.23533 1.25025 1.19609 1.15007 1.07888 1.03933 0.90486 1.26014 0.96024 0.97082 1.02092 1.69655 1.21734 1.23265 1.41275 0.85012 0.78220 0.77639 0.77616 1.19822 1.19422 1.19794 1.21924 1.00809 1.00278 0.93143 1.21991 1.02782 0.77970 0.98856 1.48311 1.54781 1.10089 1.20015 1.21101 0.76430 0.87093 0.84692 1.90499 1.59142 1.16979 1.79383 1.22557 1.04022 1.00222 0.93730 1.21120 0.86678 0.90670 0.92164 1.22591 0.99122 0.99996 1.02243 1.21808 1.02575 1.00115 0.95058 1.86396 1.37551 1.68516 1.47465 0.92336 0.90716 0.91166 0.92410 0.90152 0.83766 0.87609 0.91499 0.76895 0.91275 0.89911 0.92453 0.89069 0.87041 0.85067 0.87114 0.90345 0.92568 0.92182 0.91936 0.92203 0.88585 0.76418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.03 71.98 0.65 -1.44 16 2 C 0.14 2.43 3.21 44.98 0.14 2.58 16 3 H 0.09 1.78 7.00 -2.39 -0.02 1.76 16 4 C -0.12 -2.39 4.83 30.67 0.15 -2.24 16 5 C 0.09 1.81 2.25 44.94 0.10 1.91 16 6 H 0.06 1.10 6.15 -2.39 -0.01 1.09 16 7 N -0.68 -19.98 5.93 -495.42 -2.94 -22.92 16 8 C 0.07 2.16 5.96 85.55 0.51 2.67 16 9 C 0.44 20.22 7.82 87.66 0.69 20.90 16 10 O -0.63 -34.41 15.78 -3.07 -0.05 -34.46 16 11 N -0.57 -28.74 5.29 -306.99 -1.62 -30.36 16 12 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 13 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 14 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 15 N -0.92 -48.65 13.05 21.67 0.28 -48.37 16 16 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 20 C -0.12 -2.12 5.59 30.67 0.17 -1.94 16 21 C 0.11 1.19 5.88 86.36 0.51 1.70 16 22 N -0.60 -9.30 2.68 -795.04 -2.13 -11.43 16 23 C 0.52 9.17 7.16 87.66 0.63 9.80 16 24 O -0.58 -13.80 11.18 15.80 0.18 -13.63 16 25 C -0.17 -2.01 3.35 29.85 0.10 -1.91 16 26 C 0.13 2.11 1.11 -10.79 -0.01 2.09 16 27 C -0.18 -2.80 8.50 71.98 0.61 -2.19 16 28 C -0.14 -1.60 8.84 71.98 0.64 -0.96 16 29 O -0.59 -13.38 12.95 -130.17 -1.69 -15.06 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.85 5.72 -2.39 -0.01 0.83 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.47 8.10 -2.39 -0.02 1.46 16 35 H 0.34 10.90 8.03 -89.70 -0.72 10.18 16 36 H 0.11 2.95 7.41 -2.39 -0.02 2.93 16 37 H 0.07 1.83 8.05 -2.39 -0.02 1.81 16 38 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 39 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 40 H 0.08 1.39 7.42 -2.39 -0.02 1.37 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 0.75 7.50 -2.39 -0.02 0.73 16 43 H 0.11 0.75 5.96 -2.39 -0.01 0.73 16 44 H 0.13 0.77 7.63 -2.39 -0.02 0.75 16 45 H 0.11 1.25 7.96 -2.39 -0.02 1.23 16 46 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.06 1.19 5.76 -2.39 -0.01 1.17 16 49 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.38 9.13 6.31 -74.06 -0.47 8.66 16 Total: -1.00 -71.78 402.11 -0.74 -72.52 By element: Atomic # 1 Polarization: 47.39 SS G_CDS: -0.97 Total: 46.42 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 6.16 Total: 12.77 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -6.41 Total: -113.08 kcal Atomic # 8 Polarization: -61.60 SS G_CDS: -1.56 Total: -63.16 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -71.78 -0.74 -72.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277741165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.142 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds