Wall clock time and date at job start Wed Apr 1 2020 00:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.58699 * 2 1 4 4 C 1.53196 * 109.70089 * 120.35338 * 2 1 3 5 5 C 1.53039 * 109.31344 * 65.22444 * 4 2 1 6 6 H 1.09004 * 109.44425 * 301.34744 * 5 4 2 7 7 N 1.46895 * 109.46103 * 181.38351 * 5 4 2 8 8 C 1.46905 * 111.00171 * 154.92785 * 7 5 4 9 9 C 1.50706 * 109.46943 * 180.02562 * 8 7 5 10 10 O 1.21292 * 120.00254 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.37095 * 119.99970 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99992 * 0.02562 * 12 11 9 14 14 C 1.38951 * 119.99671 * 180.02562 * 12 11 9 15 15 N 1.31414 * 119.99798 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00536 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00539 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00289 * 16 14 12 19 19 H 1.48498 * 109.47210 * 150.00000 * 16 14 12 20 20 C 1.53032 * 109.54257 * 61.36002 * 5 4 2 21 21 C 1.53197 * 109.31509 * 298.64016 * 20 5 4 22 22 N 1.46925 * 109.58635 * 239.71273 * 2 1 3 23 23 C 1.34774 * 120.63018 * 113.65831 * 22 2 1 24 24 O 1.21280 * 119.99924 * 0.02562 * 23 22 2 25 25 C 1.50702 * 120.00090 * 180.02562 * 23 22 2 26 26 C 1.53001 * 109.47178 * 179.97438 * 25 23 22 27 27 C 1.52996 * 109.47120 * 59.99655 * 26 25 23 28 28 C 1.52998 * 109.46908 * 179.97438 * 26 25 23 29 29 O 1.42903 * 109.47040 * 299.99831 * 26 25 23 30 30 H 1.09004 * 109.47180 * 180.28804 * 1 2 3 31 31 H 1.09004 * 109.46789 * 300.28832 * 1 2 3 32 32 H 1.09001 * 109.47284 * 60.28276 * 1 2 3 33 33 H 1.08997 * 109.49662 * 305.26880 * 4 2 1 34 34 H 1.09000 * 109.49278 * 185.17292 * 4 2 1 35 35 H 1.00907 * 111.00152 * 30.97313 * 7 5 4 36 36 H 1.08996 * 109.46646 * 60.00323 * 8 7 5 37 37 H 1.09000 * 109.46710 * 299.99944 * 8 7 5 38 38 H 0.97004 * 119.99528 * 0.02562 * 11 9 8 39 39 H 0.96996 * 120.00340 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.49639 * 58.58677 * 20 5 4 41 41 H 1.08994 * 109.50272 * 178.65139 * 20 5 4 42 42 H 1.08999 * 109.58792 * 174.42257 * 21 20 5 43 43 H 1.09003 * 109.58418 * 294.70359 * 21 20 5 44 44 H 1.09002 * 109.46867 * 299.99926 * 25 23 22 45 45 H 1.09004 * 109.47024 * 59.99518 * 25 23 22 46 46 H 1.09002 * 109.47005 * 59.99995 * 27 26 25 47 47 H 1.08998 * 109.47245 * 179.97438 * 27 26 25 48 48 H 1.08998 * 109.47135 * 300.00141 * 27 26 25 49 49 H 1.08995 * 109.47144 * 59.99930 * 28 26 25 50 50 H 1.08998 * 109.46938 * 180.02562 * 28 26 25 51 51 H 1.09002 * 109.47084 * 299.99924 * 28 26 25 52 52 H 0.96700 * 113.99667 * 299.99823 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0465 -0.7288 1.2446 5 6 1.6473 -2.2043 1.1692 6 1 0.5624 -2.2836 1.0995 7 7 2.1122 -2.8994 2.3769 8 6 1.2933 -4.0885 2.6481 9 6 1.7987 -4.7734 3.8918 10 8 2.7474 -4.3158 4.4933 11 7 1.1959 -5.8939 4.3362 12 6 1.6560 -6.5173 5.4673 13 1 2.5012 -6.1103 6.0024 14 6 1.0347 -7.6728 5.9251 15 7 1.4754 -8.2701 7.0096 16 14 -0.4276 -8.3765 5.0000 17 1 -1.6816 -7.7880 5.5350 18 1 -0.3039 -8.0499 3.5567 19 1 -0.4597 -9.8511 5.1729 20 6 2.2856 -2.8449 -0.0653 21 6 1.7719 -2.1400 -1.3248 22 7 2.0226 -0.6981 -1.1953 23 6 2.6912 -0.0285 -2.1549 24 8 2.8918 1.1617 -2.0363 25 6 3.1896 -0.7586 -3.3754 26 6 3.9086 0.2256 -4.3003 27 6 5.0934 0.8489 -3.5596 28 6 4.4152 -0.5159 -5.5391 29 8 3.0010 1.2549 -4.6986 30 1 -0.3634 -1.0277 0.0052 31 1 -0.3633 0.5183 0.8874 32 1 -0.3634 0.5094 -0.8925 33 1 1.6106 -0.2791 2.1366 34 1 3.1325 -0.6476 1.2892 35 1 2.1209 -2.2774 3.1714 36 1 1.3579 -4.7744 1.8035 37 1 0.2556 -3.7892 2.7948 38 1 0.4370 -6.2597 3.8553 39 1 1.0416 -9.0765 7.3295 40 1 3.3694 -2.7438 -0.0084 41 1 2.0205 -3.9013 -0.1053 42 1 2.2969 -2.5252 -2.1990 43 1 0.7021 -2.3188 -1.4329 44 1 3.8816 -1.5441 -3.0716 45 1 2.3454 -1.2023 -3.9033 46 1 5.7857 0.0637 -3.2558 47 1 5.6059 1.5497 -4.2186 48 1 4.7328 1.3770 -2.6769 49 1 3.5714 -0.9603 -6.0669 50 1 4.9278 0.1851 -6.1977 51 1 5.1076 -1.3008 -5.2349 52 1 2.2240 0.9315 -5.1748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277741166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:07 Heat of formation + Delta-G solvation = -119.616605 kcal Electronic energy + Delta-G solvation = -30741.795291 eV Core-core repulsion = 26548.220157 eV Total energy + Delta-G solvation = -4193.575135 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.87936 -39.11282 -38.35368 -37.32510 -35.25354 -33.94419 -33.37410 -32.60783 -31.72020 -31.20481 -28.79804 -28.08989 -27.60487 -26.42328 -24.22520 -23.71202 -22.45138 -21.32191 -20.35729 -19.44530 -18.74592 -18.26391 -17.58300 -17.07021 -16.19169 -16.06868 -15.67128 -15.43022 -15.16073 -14.97764 -14.88612 -14.77765 -14.16590 -14.11835 -13.90385 -13.54704 -13.41533 -13.25249 -13.01032 -12.74345 -12.55889 -12.51971 -12.48092 -12.35185 -12.24836 -12.12403 -12.03621 -11.91397 -11.74483 -11.51299 -11.30914 -11.19786 -11.07279 -10.92833 -10.62463 -10.44870 -10.36605 -10.00082 -9.70310 -9.60127 -8.87513 -8.60848 -8.23325 -8.17681 -6.33491 -3.85071 2.43302 2.67274 2.99364 3.03650 3.12303 3.70962 3.87589 3.98309 4.07626 4.17199 4.26220 4.47137 4.51484 4.58266 4.73260 4.73923 4.78662 4.89640 4.96664 5.04513 5.06985 5.14544 5.17205 5.18144 5.23229 5.25937 5.33341 5.43184 5.46836 5.56585 5.58323 5.66664 5.67858 5.69721 5.75464 5.77120 5.78928 5.87739 5.89591 5.98542 6.18032 6.19600 6.36340 7.08478 7.17818 7.40971 7.53358 7.56098 8.01414 8.12014 8.57138 8.92513 9.39749 9.79987 10.79624 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022006 B = 0.001988 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.049278 B =14084.188580 C =14326.932723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.101 0.899 4 C -0.130 4.130 5 C 0.088 3.912 6 H 0.046 0.954 7 N -0.665 5.665 8 C 0.049 3.951 9 C 0.449 3.551 10 O -0.564 6.564 11 N -0.591 5.591 12 C -0.305 4.305 13 H 0.119 0.881 14 C 0.041 3.959 15 N -0.881 5.881 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.276 1.276 20 C -0.124 4.124 21 C 0.106 3.894 22 N -0.609 5.609 23 C 0.517 3.483 24 O -0.520 6.520 25 C -0.170 4.170 26 C 0.145 3.855 27 C -0.153 4.153 28 C -0.179 4.179 29 O -0.543 6.543 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.352 0.648 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.091 0.909 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 13.749 -25.683 29.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.119 0.881 4 C -0.169 4.169 5 C -0.022 4.022 6 H 0.064 0.936 7 N -0.298 5.298 8 C -0.084 4.084 9 C 0.235 3.765 10 O -0.446 6.446 11 N -0.230 5.230 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.521 5.521 16 Si 0.707 3.293 17 H -0.197 1.197 18 H -0.195 1.195 19 H -0.202 1.202 20 C -0.163 4.163 21 C -0.017 4.017 22 N -0.343 5.343 23 C 0.305 3.695 24 O -0.396 6.396 25 C -0.211 4.211 26 C 0.104 3.896 27 C -0.210 4.210 28 C -0.237 4.237 29 O -0.348 6.348 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.173 0.827 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.110 0.890 49 H 0.076 0.924 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.962 14.550 -25.060 28.993 hybrid contribution -2.506 -1.150 -0.531 2.808 sum -3.468 13.399 -25.591 29.094 Atomic orbital electron populations 1.22161 0.95057 1.02405 1.02420 1.21114 0.93911 0.97547 0.83647 0.88089 1.22103 1.02720 0.94655 0.97376 1.21507 0.96982 0.92479 0.91248 0.93595 1.60072 1.54412 1.09052 1.06245 1.21751 0.94690 0.93833 0.98133 1.19719 0.86310 0.83248 0.87234 1.90571 1.28986 1.65809 1.59213 1.42213 1.30311 1.24374 1.26132 1.19431 1.15960 1.06920 1.01066 0.86290 1.25050 0.98216 0.96545 0.96421 1.69621 1.40916 1.19636 1.21911 0.86663 0.83104 0.79799 0.79756 1.19672 1.19507 1.20159 1.21945 1.02034 0.99632 0.92724 1.21784 1.01068 0.79825 0.99067 1.48257 1.56319 1.09097 1.20665 1.20438 0.77673 0.87558 0.83806 1.90674 1.55884 1.14888 1.78107 1.22530 1.02317 1.00301 0.95906 1.20912 0.90001 0.86755 0.91983 1.21994 0.95351 1.01324 1.02310 1.22525 1.01981 1.01064 0.98108 1.86723 1.35824 1.34499 1.77705 0.92091 0.91340 0.92393 0.90598 0.90355 0.82717 0.89612 0.93831 0.79728 0.91601 0.90500 0.90538 0.89737 0.91366 0.88009 0.88890 0.91942 0.92295 0.89032 0.92354 0.91414 0.91416 0.78714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.04 37.16 0.34 -0.96 16 2 C 0.14 1.33 3.20 -67.60 -0.22 1.11 16 3 H 0.10 1.11 7.00 -51.93 -0.36 0.75 16 4 C -0.13 -1.29 4.84 -26.61 -0.13 -1.42 16 5 C 0.09 0.93 2.25 -67.68 -0.15 0.78 16 6 H 0.05 0.46 6.16 -51.93 -0.32 0.14 16 7 N -0.66 -9.65 5.93 -107.95 -0.64 -10.29 16 8 C 0.05 0.76 5.97 -4.97 -0.03 0.73 16 9 C 0.45 9.96 7.82 -10.98 -0.09 9.87 16 10 O -0.56 -14.97 15.78 5.55 0.09 -14.88 16 11 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 12 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 13 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 14 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 15 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 16 Si 0.88 19.04 27.74 -169.99 -4.72 14.32 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 20 C -0.12 -1.15 5.59 -26.61 -0.15 -1.30 16 21 C 0.11 0.74 5.93 -3.71 -0.02 0.72 16 22 N -0.61 -5.38 2.68 -165.22 -0.44 -5.83 16 23 C 0.52 5.16 7.26 -10.99 -0.08 5.08 16 24 O -0.52 -7.08 12.37 -12.69 -0.16 -7.23 16 25 C -0.17 -1.13 3.30 -27.88 -0.09 -1.23 16 26 C 0.14 1.11 0.98 -90.62 -0.09 1.02 16 27 C -0.15 -1.41 8.52 37.16 0.32 -1.10 16 28 C -0.18 -0.96 8.81 37.16 0.33 -0.64 16 29 O -0.54 -5.08 11.88 -53.48 -0.64 -5.72 16 30 H 0.06 0.47 5.75 -51.93 -0.30 0.17 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.35 5.41 8.03 -39.29 -0.32 5.10 16 36 H 0.09 1.19 7.41 -51.93 -0.38 0.81 16 37 H 0.04 0.59 8.05 -51.93 -0.42 0.18 16 38 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.70 7.42 -51.93 -0.39 0.32 16 42 H 0.08 0.43 5.93 -51.93 -0.31 0.12 16 43 H 0.07 0.42 7.51 -51.93 -0.39 0.03 16 44 H 0.10 0.56 7.69 -51.93 -0.40 0.16 16 45 H 0.09 0.42 7.94 -51.93 -0.41 0.01 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 1.11 5.51 -51.93 -0.29 0.82 16 49 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 50 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 51 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 52 H 0.37 2.01 9.05 45.56 0.41 2.42 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -35.29 401.61 -7.93 -43.22 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -7.89 Total: 14.02 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.31 Total: 4.98 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.36 Total: -54.75 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.70 Total: -27.83 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.72 Total: 14.32 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.29 -7.93 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277741166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.399 kcal (2) G-P(sol) polarization free energy of solvation -35.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds