Wall clock time and date at job start Wed Apr 1 2020 00:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.58699 * 2 1 4 4 C 1.53196 * 109.70089 * 120.35338 * 2 1 3 5 5 C 1.53039 * 109.31344 * 65.22444 * 4 2 1 6 6 H 1.09004 * 109.44425 * 301.34744 * 5 4 2 7 7 N 1.46895 * 109.46103 * 181.38351 * 5 4 2 8 8 C 1.46905 * 111.00171 * 154.92785 * 7 5 4 9 9 C 1.50706 * 109.46943 * 180.02562 * 8 7 5 10 10 O 1.21292 * 120.00254 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.37095 * 119.99970 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99992 * 0.02562 * 12 11 9 14 14 C 1.38951 * 119.99671 * 180.02562 * 12 11 9 15 15 N 1.31414 * 119.99798 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00536 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00539 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00289 * 16 14 12 19 19 H 1.48498 * 109.47210 * 150.00000 * 16 14 12 20 20 C 1.53032 * 109.54257 * 61.36002 * 5 4 2 21 21 C 1.53197 * 109.31509 * 298.64016 * 20 5 4 22 22 N 1.46925 * 109.58635 * 239.71273 * 2 1 3 23 23 C 1.34774 * 120.63018 * 113.65831 * 22 2 1 24 24 O 1.21280 * 119.99924 * 0.02562 * 23 22 2 25 25 C 1.50702 * 120.00090 * 180.02562 * 23 22 2 26 26 C 1.53001 * 109.47178 * 179.97438 * 25 23 22 27 27 C 1.52996 * 109.47120 * 59.99655 * 26 25 23 28 28 C 1.52998 * 109.46908 * 179.97438 * 26 25 23 29 29 O 1.42903 * 109.47040 * 299.99831 * 26 25 23 30 30 H 1.09004 * 109.47180 * 180.28804 * 1 2 3 31 31 H 1.09004 * 109.46789 * 300.28832 * 1 2 3 32 32 H 1.09001 * 109.47284 * 60.28276 * 1 2 3 33 33 H 1.08997 * 109.49662 * 305.26880 * 4 2 1 34 34 H 1.09000 * 109.49278 * 185.17292 * 4 2 1 35 35 H 1.00907 * 111.00152 * 30.97313 * 7 5 4 36 36 H 1.08996 * 109.46646 * 60.00323 * 8 7 5 37 37 H 1.09000 * 109.46710 * 299.99944 * 8 7 5 38 38 H 0.97004 * 119.99528 * 0.02562 * 11 9 8 39 39 H 0.96996 * 120.00340 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.49639 * 58.58677 * 20 5 4 41 41 H 1.08994 * 109.50272 * 178.65139 * 20 5 4 42 42 H 1.08999 * 109.58792 * 174.42257 * 21 20 5 43 43 H 1.09003 * 109.58418 * 294.70359 * 21 20 5 44 44 H 1.09002 * 109.46867 * 299.99926 * 25 23 22 45 45 H 1.09004 * 109.47024 * 59.99518 * 25 23 22 46 46 H 1.09002 * 109.47005 * 59.99995 * 27 26 25 47 47 H 1.08998 * 109.47245 * 179.97438 * 27 26 25 48 48 H 1.08998 * 109.47135 * 300.00141 * 27 26 25 49 49 H 1.08995 * 109.47144 * 59.99930 * 28 26 25 50 50 H 1.08998 * 109.46938 * 180.02562 * 28 26 25 51 51 H 1.09002 * 109.47084 * 299.99924 * 28 26 25 52 52 H 0.96700 * 113.99667 * 299.99823 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0465 -0.7288 1.2446 5 6 1.6473 -2.2043 1.1692 6 1 0.5624 -2.2836 1.0995 7 7 2.1122 -2.8994 2.3769 8 6 1.2933 -4.0885 2.6481 9 6 1.7987 -4.7734 3.8918 10 8 2.7474 -4.3158 4.4933 11 7 1.1959 -5.8939 4.3362 12 6 1.6560 -6.5173 5.4673 13 1 2.5012 -6.1103 6.0024 14 6 1.0347 -7.6728 5.9251 15 7 1.4754 -8.2701 7.0096 16 14 -0.4276 -8.3765 5.0000 17 1 -1.6816 -7.7880 5.5350 18 1 -0.3039 -8.0499 3.5567 19 1 -0.4597 -9.8511 5.1729 20 6 2.2856 -2.8449 -0.0653 21 6 1.7719 -2.1400 -1.3248 22 7 2.0226 -0.6981 -1.1953 23 6 2.6912 -0.0285 -2.1549 24 8 2.8918 1.1617 -2.0363 25 6 3.1896 -0.7586 -3.3754 26 6 3.9086 0.2256 -4.3003 27 6 5.0934 0.8489 -3.5596 28 6 4.4152 -0.5159 -5.5391 29 8 3.0010 1.2549 -4.6986 30 1 -0.3634 -1.0277 0.0052 31 1 -0.3633 0.5183 0.8874 32 1 -0.3634 0.5094 -0.8925 33 1 1.6106 -0.2791 2.1366 34 1 3.1325 -0.6476 1.2892 35 1 2.1209 -2.2774 3.1714 36 1 1.3579 -4.7744 1.8035 37 1 0.2556 -3.7892 2.7948 38 1 0.4370 -6.2597 3.8553 39 1 1.0416 -9.0765 7.3295 40 1 3.3694 -2.7438 -0.0084 41 1 2.0205 -3.9013 -0.1053 42 1 2.2969 -2.5252 -2.1990 43 1 0.7021 -2.3188 -1.4329 44 1 3.8816 -1.5441 -3.0716 45 1 2.3454 -1.2023 -3.9033 46 1 5.7857 0.0637 -3.2558 47 1 5.6059 1.5497 -4.2186 48 1 4.7328 1.3770 -2.6769 49 1 3.5714 -0.9603 -6.0669 50 1 4.9278 0.1851 -6.1977 51 1 5.1076 -1.3008 -5.2349 52 1 2.2240 0.9315 -5.1748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277741166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:06 Heat of formation + Delta-G solvation = -148.381340 kcal Electronic energy + Delta-G solvation = -30743.042624 eV Core-core repulsion = 26548.220157 eV Total energy + Delta-G solvation = -4194.822467 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.59360 -40.35803 -39.56504 -38.11456 -36.39105 -35.79673 -34.05225 -33.74273 -33.24937 -32.16400 -29.56587 -28.77778 -28.16825 -27.81597 -25.66742 -24.58713 -23.27291 -22.05595 -21.29723 -20.98310 -20.29150 -19.34826 -18.35010 -17.83644 -17.53332 -16.98326 -16.74779 -16.54245 -16.29186 -16.03340 -15.62971 -15.60673 -15.48422 -15.03952 -14.83260 -14.78076 -14.47662 -14.25954 -14.14560 -13.87581 -13.74790 -13.42962 -13.25290 -13.09936 -13.07759 -12.95830 -12.81233 -12.77749 -12.68182 -12.43058 -12.40702 -12.31630 -12.07357 -11.97115 -11.71731 -11.62097 -11.50433 -11.22654 -10.96155 -10.43529 -10.41515 -10.24369 -9.59334 -9.29856 -8.40398 -6.01697 1.31105 1.37090 1.46286 1.73190 1.97061 2.02659 2.24387 2.72077 3.16091 3.32979 3.38921 3.56954 3.71349 3.81669 3.86532 4.00888 4.06890 4.16522 4.20671 4.21058 4.26939 4.43946 4.44911 4.52192 4.54060 4.58293 4.61620 4.63366 4.71910 4.75183 4.77400 4.92398 4.92576 5.00383 5.02565 5.06268 5.11331 5.14482 5.25951 5.31069 5.44436 5.46313 5.54240 5.67030 5.92628 6.10915 6.38556 6.51018 6.60757 6.89143 6.99379 7.31691 7.40792 7.98053 8.77309 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022006 B = 0.001988 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.049278 B =14084.188580 C =14326.932723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.076 0.924 4 C -0.123 4.123 5 C 0.091 3.909 6 H 0.067 0.933 7 N -0.685 5.685 8 C 0.064 3.936 9 C 0.447 3.553 10 O -0.617 6.617 11 N -0.590 5.590 12 C -0.329 4.329 13 H 0.053 0.947 14 C -0.018 4.018 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.257 1.257 18 H -0.227 1.227 19 H -0.276 1.276 20 C -0.123 4.123 21 C 0.108 3.892 22 N -0.608 5.608 23 C 0.509 3.491 24 O -0.566 6.566 25 C -0.163 4.163 26 C 0.141 3.859 27 C -0.155 4.155 28 C -0.171 4.171 29 O -0.570 6.570 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.343 0.657 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.058 0.942 51 H 0.078 0.922 52 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 12.092 -29.547 32.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.039 3.961 3 H 0.094 0.906 4 C -0.162 4.162 5 C -0.018 4.018 6 H 0.085 0.915 7 N -0.318 5.318 8 C -0.068 4.068 9 C 0.235 3.765 10 O -0.501 6.501 11 N -0.232 5.232 12 C -0.458 4.458 13 H 0.071 0.929 14 C -0.217 4.217 15 N -0.576 5.576 16 Si 0.787 3.213 17 H -0.182 1.182 18 H -0.150 1.150 19 H -0.202 1.202 20 C -0.162 4.162 21 C -0.014 4.014 22 N -0.342 5.342 23 C 0.299 3.701 24 O -0.445 6.445 25 C -0.203 4.203 26 C 0.100 3.900 27 C -0.212 4.212 28 C -0.229 4.229 29 O -0.377 6.377 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.162 0.838 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.226 0.774 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.129 0.871 43 H 0.107 0.893 44 H 0.137 0.863 45 H 0.143 0.857 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.097 0.903 50 H 0.077 0.923 51 H 0.097 0.903 52 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.151 12.885 -28.965 31.973 hybrid contribution -1.371 -0.517 0.771 1.656 sum -5.521 12.368 -28.194 31.279 Atomic orbital electron populations 1.22090 0.93400 1.03179 1.02542 1.20993 0.95053 0.96307 0.83759 0.90586 1.22014 1.01263 0.94954 0.97971 1.21605 0.98157 0.92003 0.90021 0.91526 1.60111 1.55281 1.09188 1.07181 1.21680 0.95943 0.94157 0.95008 1.21075 0.84870 0.82224 0.88317 1.90553 1.31343 1.66966 1.61284 1.42026 1.31181 1.24851 1.25162 1.18992 1.15351 1.08343 1.03139 0.92918 1.26175 1.02042 0.96160 0.97274 1.69813 1.43183 1.20411 1.24214 0.85334 0.77501 0.78314 0.80164 1.18180 1.15041 1.20162 1.21940 1.00786 1.00398 0.93051 1.21963 1.02638 0.78026 0.98814 1.48358 1.55743 1.10013 1.20055 1.21107 0.77045 0.87262 0.84728 1.90670 1.57513 1.17096 1.79180 1.22558 1.03608 0.99907 0.94219 1.20980 0.89253 0.86709 0.93047 1.21993 0.96598 1.01539 1.01109 1.22441 1.02833 1.00823 0.96786 1.86686 1.36899 1.35971 1.78190 0.90812 0.90914 0.92675 0.90378 0.92683 0.83786 0.86586 0.90416 0.77384 0.91174 0.92530 0.89494 0.87066 0.89263 0.86261 0.85686 0.90586 0.92971 0.92305 0.90335 0.92309 0.90328 0.76982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.04 71.98 0.65 -1.45 16 2 C 0.14 2.55 3.20 44.98 0.14 2.69 16 3 H 0.08 1.75 7.00 -2.39 -0.02 1.74 16 4 C -0.12 -2.37 4.84 30.67 0.15 -2.22 16 5 C 0.09 1.68 2.25 44.94 0.10 1.78 16 6 H 0.07 1.00 6.16 -2.38 -0.01 0.99 16 7 N -0.68 -18.69 5.93 -495.44 -2.94 -21.63 16 8 C 0.06 1.79 5.97 85.56 0.51 2.30 16 9 C 0.45 19.56 7.82 87.66 0.69 20.24 16 10 O -0.62 -33.93 15.78 -3.07 -0.05 -33.98 16 11 N -0.59 -27.04 5.09 -306.98 -1.56 -28.60 16 12 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 13 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 14 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 15 N -0.94 -56.07 13.96 21.66 0.30 -55.77 16 16 Si 0.97 37.64 27.74 68.60 1.90 39.54 16 17 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 18 H -0.23 -7.24 6.52 99.48 0.65 -6.60 16 19 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 20 C -0.12 -1.86 5.59 30.67 0.17 -1.69 16 21 C 0.11 1.05 5.93 86.36 0.51 1.56 16 22 N -0.61 -9.50 2.68 -795.01 -2.13 -11.63 16 23 C 0.51 9.52 7.26 87.66 0.64 10.16 16 24 O -0.57 -15.84 12.37 14.42 0.18 -15.66 16 25 C -0.16 -1.69 3.30 29.85 0.10 -1.59 16 26 C 0.14 1.94 0.98 -10.80 -0.01 1.93 16 27 C -0.16 -2.90 8.52 71.98 0.61 -2.29 16 28 C -0.17 -1.37 8.81 71.98 0.63 -0.74 16 29 O -0.57 -10.20 11.88 -131.53 -1.56 -11.76 16 30 H 0.07 0.82 5.75 -2.39 -0.01 0.80 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.44 8.10 -2.39 -0.02 1.42 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.34 10.41 8.03 -89.69 -0.72 9.69 16 36 H 0.12 2.61 7.41 -2.39 -0.02 2.59 16 37 H 0.08 1.71 8.05 -2.39 -0.02 1.69 16 38 H 0.39 14.50 5.76 -92.71 -0.53 13.96 16 39 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.18 7.42 -2.39 -0.02 1.16 16 42 H 0.11 0.54 5.93 -2.39 -0.01 0.52 16 43 H 0.09 0.59 7.51 -2.39 -0.02 0.57 16 44 H 0.12 0.85 7.69 -2.39 -0.02 0.83 16 45 H 0.13 0.51 7.94 -2.38 -0.02 0.50 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 1.51 5.51 -2.39 -0.01 1.50 16 49 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 50 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 52 H 0.38 3.55 9.05 -74.06 -0.67 2.88 16 Total: -1.00 -85.85 401.61 -0.67 -86.53 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -1.03 Total: 41.00 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.22 Total: 11.95 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -6.33 Total: -117.63 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: -1.43 Total: -61.39 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 1.90 Total: 39.54 kcal Total: -85.85 -0.67 -86.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277741166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.854 kcal (2) G-P(sol) polarization free energy of solvation -85.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds