Wall clock time and date at job start Wed Apr 1 2020 00:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.58320 * 2 1 4 4 C 1.53191 * 109.70820 * 239.64183 * 2 1 3 5 5 C 1.53037 * 109.31572 * 185.50639 * 4 2 1 6 6 H 1.08996 * 109.45162 * 301.35504 * 5 4 2 7 7 N 1.46894 * 109.46227 * 181.38498 * 5 4 2 8 8 C 1.46898 * 111.00265 * 154.93188 * 7 5 4 9 9 C 1.50699 * 109.47386 * 179.97438 * 8 7 5 10 10 O 1.21299 * 120.00032 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00462 * 179.97438 * 9 8 7 12 12 C 1.37092 * 120.00358 * 180.02562 * 11 9 8 13 13 H 1.07997 * 120.00243 * 0.02562 * 12 11 9 14 14 C 1.38951 * 120.00086 * 180.27886 * 12 11 9 15 15 N 1.31412 * 120.00030 * 179.72387 * 14 12 11 16 16 Si 1.86808 * 119.99873 * 359.72174 * 14 12 11 17 17 H 1.48504 * 109.46830 * 90.00189 * 16 14 12 18 18 H 1.48497 * 109.47097 * 210.00145 * 16 14 12 19 19 H 1.48497 * 109.46855 * 330.00377 * 16 14 12 20 20 C 1.53040 * 109.53585 * 61.36564 * 5 4 2 21 21 C 1.53192 * 109.31329 * 298.63499 * 20 5 4 22 22 N 1.46919 * 108.77642 * 54.63741 * 21 20 5 23 23 C 1.34780 * 120.63492 * 126.41474 * 22 21 20 24 24 O 1.21280 * 120.00197 * 174.54794 * 23 22 21 25 25 C 1.50696 * 119.99583 * 354.55013 * 23 22 21 26 26 C 1.52997 * 109.47019 * 184.03134 * 25 23 22 27 27 C 1.53000 * 109.47176 * 60.18324 * 26 25 23 28 28 C 1.53003 * 109.47034 * 180.18538 * 26 25 23 29 29 O 1.42901 * 109.47222 * 300.17947 * 26 25 23 30 30 H 1.09000 * 109.47613 * 306.06410 * 1 2 3 31 31 H 1.08999 * 109.47279 * 66.07166 * 1 2 3 32 32 H 1.09005 * 109.47327 * 186.06732 * 1 2 3 33 33 H 1.08998 * 109.49726 * 65.55445 * 4 2 1 34 34 H 1.09000 * 109.49606 * 305.45789 * 4 2 1 35 35 H 1.00902 * 111.00120 * 30.97419 * 7 5 4 36 36 H 1.09003 * 109.46750 * 60.00128 * 8 7 5 37 37 H 1.09001 * 109.46934 * 300.00053 * 8 7 5 38 38 H 0.97003 * 119.99530 * 0.02562 * 11 9 8 39 39 H 0.97010 * 119.99675 * 179.97438 * 15 14 12 40 40 H 1.09005 * 109.50204 * 58.58543 * 20 5 4 41 41 H 1.08999 * 109.49612 * 178.68409 * 20 5 4 42 42 H 1.09002 * 109.58597 * 174.42412 * 21 20 5 43 43 H 1.09004 * 109.58514 * 294.70271 * 21 20 5 44 44 H 1.09002 * 109.47668 * 304.03236 * 25 23 22 45 45 H 1.09003 * 109.47074 * 64.03059 * 25 23 22 46 46 H 1.09000 * 109.47090 * 59.99906 * 27 26 25 47 47 H 1.08999 * 109.46740 * 180.02562 * 27 26 25 48 48 H 1.08993 * 109.46865 * 299.99867 * 27 26 25 49 49 H 1.08996 * 109.47239 * 55.02488 * 28 26 25 50 50 H 1.09004 * 109.46966 * 175.02530 * 28 26 25 51 51 H 1.09003 * 109.47307 * 295.02238 * 28 26 25 52 52 H 0.96700 * 113.99542 * 59.99977 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 3.5706 -0.8443 -1.1673 6 1 4.0069 0.1520 -1.0962 7 7 4.0725 -1.5134 -2.3748 8 6 5.4668 -1.1375 -2.6440 9 6 5.9462 -1.8422 -3.8869 10 8 5.1995 -2.5843 -4.4895 11 7 7.2041 -1.6472 -4.3295 12 6 7.6400 -2.2879 -5.4604 13 1 6.9752 -2.9486 -5.9969 14 6 8.9388 -2.0913 -5.9134 15 7 9.3583 -2.7097 -6.9944 16 14 10.0885 -0.9480 -4.9858 17 1 10.8294 -1.7198 -3.9559 18 1 11.0529 -0.3380 -5.9361 19 1 9.2972 0.1227 -4.3280 20 6 3.9602 -1.6607 0.0672 21 6 3.4653 -0.9424 1.3265 22 7 2.0225 -0.6980 1.1954 23 6 1.1670 -1.1059 2.1537 24 8 -0.0076 -0.8124 2.0830 25 6 1.6701 -1.9267 3.3131 26 6 0.4904 -2.3398 4.1954 27 6 -0.4934 -3.1747 3.3733 28 6 1.0017 -3.1693 5.3750 29 8 -0.1700 -1.1713 4.6856 30 1 -0.3634 0.6050 0.8307 31 1 -0.3634 0.4168 -0.9393 32 1 -0.3634 -1.0219 0.1086 33 1 1.7689 -0.1673 -2.1364 34 1 1.6081 -1.7257 -1.2904 35 1 3.4842 -1.3137 -3.1699 36 1 6.0910 -1.4276 -1.7988 37 1 5.5307 -0.0592 -2.7898 38 1 7.8011 -1.0535 -3.8478 39 1 10.2649 -2.5722 -7.3109 40 1 3.5037 -2.6488 0.0089 41 1 5.0446 -1.7623 0.1087 42 1 3.6523 -1.5664 2.2004 43 1 3.9904 0.0066 1.4361 44 1 2.1720 -2.8181 2.9367 45 1 2.3727 -1.3346 3.8997 46 1 0.0104 -4.0661 2.9994 47 1 -1.3341 -3.4687 4.0018 48 1 -0.8577 -2.5838 2.5330 49 1 1.7677 -2.6073 5.9094 50 1 0.1747 -3.3888 6.0503 51 1 1.4269 -4.1026 5.0058 52 1 -0.5205 -0.5971 3.9910 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277741168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:15 Heat of formation + Delta-G solvation = -110.747446 kcal Electronic energy + Delta-G solvation = -30824.580304 eV Core-core repulsion = 26631.389765 eV Total energy + Delta-G solvation = -4193.190539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.21208 -39.08395 -38.35464 -37.25861 -35.28719 -33.97050 -33.63249 -32.64094 -31.74797 -31.30950 -28.88453 -27.70906 -27.59423 -26.41212 -24.41115 -23.63666 -22.56910 -20.90192 -20.54888 -19.51087 -19.27161 -18.36525 -17.34926 -16.94511 -16.45142 -16.25808 -15.97157 -15.50306 -15.17830 -15.00664 -14.79121 -14.69532 -14.32510 -14.11048 -13.85681 -13.65125 -13.34531 -13.06765 -12.81629 -12.74334 -12.70172 -12.52613 -12.48051 -12.37070 -12.29265 -12.14323 -12.07413 -11.89530 -11.78342 -11.60178 -11.33553 -11.22824 -11.10401 -10.96681 -10.69589 -10.63387 -10.22581 -10.01246 -9.61373 -9.34512 -8.95906 -8.63519 -8.25741 -8.20514 -6.34647 -3.86283 2.20382 2.56256 2.98478 3.03079 3.11638 3.69065 3.91810 3.98023 4.05282 4.06684 4.26928 4.43709 4.49729 4.64479 4.69260 4.71057 4.83664 4.92340 4.94944 5.02146 5.11919 5.15085 5.16244 5.22754 5.26192 5.28848 5.30844 5.48603 5.49079 5.54659 5.61403 5.63506 5.65476 5.70949 5.74082 5.81505 5.85278 5.86320 5.96751 6.00415 6.12094 6.14262 6.36117 7.01999 7.04644 7.49567 7.52053 7.54485 7.85328 8.10673 8.55772 8.91244 9.38453 9.78437 10.78396 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.001989 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.933572 B =14077.186458 C =14495.541351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.146 3.854 3 H 0.071 0.929 4 C -0.133 4.133 5 C 0.088 3.912 6 H 0.044 0.956 7 N -0.664 5.664 8 C 0.048 3.952 9 C 0.449 3.551 10 O -0.564 6.564 11 N -0.590 5.590 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.041 3.959 15 N -0.880 5.880 16 Si 0.880 3.120 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.270 1.270 20 C -0.125 4.125 21 C 0.105 3.895 22 N -0.604 5.604 23 C 0.523 3.477 24 O -0.539 6.539 25 C -0.174 4.174 26 C 0.146 3.854 27 C -0.189 4.189 28 C -0.140 4.140 29 O -0.567 6.567 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.353 0.647 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.061 0.939 50 H 0.066 0.934 51 H 0.070 0.930 52 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.811 6.215 23.705 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 H 0.089 0.911 4 C -0.171 4.171 5 C -0.022 4.022 6 H 0.061 0.939 7 N -0.297 5.297 8 C -0.084 4.084 9 C 0.235 3.765 10 O -0.446 6.446 11 N -0.230 5.230 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.520 5.520 16 Si 0.707 3.293 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.196 1.196 20 C -0.164 4.164 21 C -0.019 4.019 22 N -0.337 5.337 23 C 0.312 3.688 24 O -0.419 6.419 25 C -0.215 4.215 26 C 0.105 3.895 27 C -0.246 4.246 28 C -0.198 4.198 29 O -0.379 6.379 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.173 0.827 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.101 0.899 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -14.416 4.989 23.947 28.393 hybrid contribution 1.245 1.940 -0.440 2.347 sum -13.171 6.929 23.506 27.821 Atomic orbital electron populations 1.22187 0.92223 1.03824 1.01156 1.21290 0.95998 0.94995 0.83423 0.91075 1.22202 0.95170 1.02288 0.97476 1.21482 0.94056 0.95316 0.91377 0.93855 1.60072 1.02280 1.61180 1.06187 1.21755 0.91098 0.97384 0.98198 1.19707 0.83069 0.86502 0.87271 1.90573 1.54906 1.39976 1.59170 1.42207 1.11701 1.42861 1.26197 1.19428 0.98079 1.24492 1.01424 0.86285 1.25052 0.96953 0.97772 0.96436 1.69625 1.18281 1.42002 1.22125 0.86665 0.81518 0.80930 0.80210 1.19586 1.20165 1.19562 1.21958 1.01838 1.00011 0.92580 1.21866 0.79762 1.00912 0.99315 1.48227 1.07485 1.57534 1.20432 1.20602 0.85883 0.79318 0.82947 1.90585 1.17097 1.57289 1.76916 1.22593 1.01262 1.01376 0.96226 1.20818 0.89849 0.86173 0.92642 1.22677 0.99809 1.00464 1.01666 1.21782 1.01697 0.98974 0.97313 1.86413 1.76451 1.35735 1.39296 0.90350 0.93605 0.91511 0.90530 0.90272 0.82690 0.89569 0.93785 0.79720 0.91587 0.90429 0.90338 0.89387 0.91022 0.87999 0.88161 0.92319 0.92103 0.89879 0.91973 0.91505 0.91126 0.76092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 7.62 37.15 0.28 -0.98 16 2 C 0.15 1.26 3.48 -67.60 -0.24 1.02 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -1.25 4.66 -26.61 -0.12 -1.37 16 5 C 0.09 0.90 2.46 -67.68 -0.17 0.73 16 6 H 0.04 0.42 7.80 -51.93 -0.40 0.02 16 7 N -0.66 -9.46 5.93 -107.96 -0.64 -10.10 16 8 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 9 C 0.45 9.89 7.82 -10.99 -0.09 9.80 16 10 O -0.56 -14.89 15.78 5.54 0.09 -14.80 16 11 N -0.59 -13.74 5.09 -10.97 -0.06 -13.79 16 12 C -0.31 -8.53 10.16 -14.94 -0.15 -8.68 16 13 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 14 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 15 N -0.88 -25.46 13.96 55.50 0.77 -24.69 16 16 Si 0.88 18.99 27.73 -169.99 -4.71 14.27 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 20 C -0.13 -1.10 5.59 -26.61 -0.15 -1.25 16 21 C 0.10 0.69 6.36 -3.71 -0.02 0.67 16 22 N -0.60 -4.87 2.97 -165.22 -0.49 -5.36 16 23 C 0.52 4.52 6.99 -10.99 -0.08 4.44 16 24 O -0.54 -5.54 7.29 -13.70 -0.10 -5.64 16 25 C -0.17 -1.18 3.33 -27.89 -0.09 -1.27 16 26 C 0.15 1.18 1.11 -90.62 -0.10 1.08 16 27 C -0.19 -1.58 8.50 37.16 0.32 -1.26 16 28 C -0.14 -0.93 8.84 37.16 0.33 -0.60 16 29 O -0.57 -5.83 12.95 -54.49 -0.71 -6.54 16 30 H 0.08 0.79 6.60 -51.93 -0.34 0.45 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.71 6.90 -51.93 -0.36 0.35 16 33 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.35 5.33 8.03 -39.29 -0.32 5.01 16 36 H 0.09 1.17 7.41 -51.93 -0.39 0.79 16 37 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 38 H 0.37 7.51 5.77 -40.82 -0.24 7.27 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.69 7.43 -51.93 -0.39 0.30 16 42 H 0.09 0.43 5.92 -51.93 -0.31 0.12 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.56 7.74 -51.93 -0.40 0.16 16 45 H 0.10 0.58 7.91 -51.93 -0.41 0.17 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.82 5.68 -51.93 -0.29 0.53 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.39 3.87 6.38 45.56 0.29 4.16 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -32.87 397.65 -8.43 -41.30 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -8.17 Total: 15.31 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.40 Total: 4.06 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.41 Total: -53.95 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.72 Total: -26.98 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.87 -8.43 -41.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277741168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.444 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds