Wall clock time and date at job start Wed Apr 1 2020 00:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.58320 * 2 1 4 4 C 1.53191 * 109.70820 * 239.64183 * 2 1 3 5 5 C 1.53037 * 109.31572 * 185.50639 * 4 2 1 6 6 H 1.08996 * 109.45162 * 301.35504 * 5 4 2 7 7 N 1.46894 * 109.46227 * 181.38498 * 5 4 2 8 8 C 1.46898 * 111.00265 * 154.93188 * 7 5 4 9 9 C 1.50699 * 109.47386 * 179.97438 * 8 7 5 10 10 O 1.21299 * 120.00032 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00462 * 179.97438 * 9 8 7 12 12 C 1.37092 * 120.00358 * 180.02562 * 11 9 8 13 13 H 1.07997 * 120.00243 * 0.02562 * 12 11 9 14 14 C 1.38951 * 120.00086 * 180.27886 * 12 11 9 15 15 N 1.31412 * 120.00030 * 179.72387 * 14 12 11 16 16 Si 1.86808 * 119.99873 * 359.72174 * 14 12 11 17 17 H 1.48504 * 109.46830 * 90.00189 * 16 14 12 18 18 H 1.48497 * 109.47097 * 210.00145 * 16 14 12 19 19 H 1.48497 * 109.46855 * 330.00377 * 16 14 12 20 20 C 1.53040 * 109.53585 * 61.36564 * 5 4 2 21 21 C 1.53192 * 109.31329 * 298.63499 * 20 5 4 22 22 N 1.46919 * 108.77642 * 54.63741 * 21 20 5 23 23 C 1.34780 * 120.63492 * 126.41474 * 22 21 20 24 24 O 1.21280 * 120.00197 * 174.54794 * 23 22 21 25 25 C 1.50696 * 119.99583 * 354.55013 * 23 22 21 26 26 C 1.52997 * 109.47019 * 184.03134 * 25 23 22 27 27 C 1.53000 * 109.47176 * 60.18324 * 26 25 23 28 28 C 1.53003 * 109.47034 * 180.18538 * 26 25 23 29 29 O 1.42901 * 109.47222 * 300.17947 * 26 25 23 30 30 H 1.09000 * 109.47613 * 306.06410 * 1 2 3 31 31 H 1.08999 * 109.47279 * 66.07166 * 1 2 3 32 32 H 1.09005 * 109.47327 * 186.06732 * 1 2 3 33 33 H 1.08998 * 109.49726 * 65.55445 * 4 2 1 34 34 H 1.09000 * 109.49606 * 305.45789 * 4 2 1 35 35 H 1.00902 * 111.00120 * 30.97419 * 7 5 4 36 36 H 1.09003 * 109.46750 * 60.00128 * 8 7 5 37 37 H 1.09001 * 109.46934 * 300.00053 * 8 7 5 38 38 H 0.97003 * 119.99530 * 0.02562 * 11 9 8 39 39 H 0.97010 * 119.99675 * 179.97438 * 15 14 12 40 40 H 1.09005 * 109.50204 * 58.58543 * 20 5 4 41 41 H 1.08999 * 109.49612 * 178.68409 * 20 5 4 42 42 H 1.09002 * 109.58597 * 174.42412 * 21 20 5 43 43 H 1.09004 * 109.58514 * 294.70271 * 21 20 5 44 44 H 1.09002 * 109.47668 * 304.03236 * 25 23 22 45 45 H 1.09003 * 109.47074 * 64.03059 * 25 23 22 46 46 H 1.09000 * 109.47090 * 59.99906 * 27 26 25 47 47 H 1.08999 * 109.46740 * 180.02562 * 27 26 25 48 48 H 1.08993 * 109.46865 * 299.99867 * 27 26 25 49 49 H 1.08996 * 109.47239 * 55.02488 * 28 26 25 50 50 H 1.09004 * 109.46966 * 175.02530 * 28 26 25 51 51 H 1.09003 * 109.47307 * 295.02238 * 28 26 25 52 52 H 0.96700 * 113.99542 * 59.99977 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 3.5706 -0.8443 -1.1673 6 1 4.0069 0.1520 -1.0962 7 7 4.0725 -1.5134 -2.3748 8 6 5.4668 -1.1375 -2.6440 9 6 5.9462 -1.8422 -3.8869 10 8 5.1995 -2.5843 -4.4895 11 7 7.2041 -1.6472 -4.3295 12 6 7.6400 -2.2879 -5.4604 13 1 6.9752 -2.9486 -5.9969 14 6 8.9388 -2.0913 -5.9134 15 7 9.3583 -2.7097 -6.9944 16 14 10.0885 -0.9480 -4.9858 17 1 10.8294 -1.7198 -3.9559 18 1 11.0529 -0.3380 -5.9361 19 1 9.2972 0.1227 -4.3280 20 6 3.9602 -1.6607 0.0672 21 6 3.4653 -0.9424 1.3265 22 7 2.0225 -0.6980 1.1954 23 6 1.1670 -1.1059 2.1537 24 8 -0.0076 -0.8124 2.0830 25 6 1.6701 -1.9267 3.3131 26 6 0.4904 -2.3398 4.1954 27 6 -0.4934 -3.1747 3.3733 28 6 1.0017 -3.1693 5.3750 29 8 -0.1700 -1.1713 4.6856 30 1 -0.3634 0.6050 0.8307 31 1 -0.3634 0.4168 -0.9393 32 1 -0.3634 -1.0219 0.1086 33 1 1.7689 -0.1673 -2.1364 34 1 1.6081 -1.7257 -1.2904 35 1 3.4842 -1.3137 -3.1699 36 1 6.0910 -1.4276 -1.7988 37 1 5.5307 -0.0592 -2.7898 38 1 7.8011 -1.0535 -3.8478 39 1 10.2649 -2.5722 -7.3109 40 1 3.5037 -2.6488 0.0089 41 1 5.0446 -1.7623 0.1087 42 1 3.6523 -1.5664 2.2004 43 1 3.9904 0.0066 1.4361 44 1 2.1720 -2.8181 2.9367 45 1 2.3727 -1.3346 3.8997 46 1 0.0104 -4.0661 2.9994 47 1 -1.3341 -3.4687 4.0018 48 1 -0.8577 -2.5838 2.5330 49 1 1.7677 -2.6073 5.9094 50 1 0.1747 -3.3888 6.0503 51 1 1.4269 -4.1026 5.0058 52 1 -0.5205 -0.5971 3.9910 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277741168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:14 Heat of formation + Delta-G solvation = -136.596937 kcal Electronic energy + Delta-G solvation = -30825.701222 eV Core-core repulsion = 26631.389765 eV Total energy + Delta-G solvation = -4194.311457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85908 -40.37330 -39.50846 -38.04454 -36.34739 -35.79387 -34.32310 -33.74971 -33.29407 -32.26125 -29.60998 -28.52844 -28.18859 -27.72657 -25.72420 -24.63128 -23.29837 -21.65160 -21.32922 -21.17564 -20.31037 -19.91793 -18.00837 -17.78136 -17.59191 -17.10555 -17.00278 -16.64838 -16.49742 -15.94948 -15.73705 -15.55583 -15.40138 -15.10401 -14.93266 -14.67323 -14.57072 -14.21806 -14.02180 -13.77302 -13.56125 -13.39005 -13.35610 -13.28113 -13.02459 -12.98261 -12.90389 -12.77768 -12.64226 -12.52437 -12.40941 -12.39739 -12.02786 -11.97330 -11.79216 -11.65792 -11.50612 -11.44747 -10.88271 -10.43045 -10.24683 -10.01738 -9.59559 -9.32324 -8.40913 -6.02154 1.30652 1.36708 1.45644 1.58645 1.96090 1.97201 2.23794 2.70951 3.15326 3.33800 3.37406 3.47568 3.70136 3.75744 3.85842 4.01480 4.08157 4.15589 4.17410 4.26285 4.29062 4.43557 4.47029 4.49427 4.53577 4.57384 4.58187 4.63601 4.74177 4.77565 4.81096 4.90254 4.92958 4.98224 5.04537 5.06841 5.09122 5.22957 5.28361 5.35408 5.39027 5.46009 5.53590 5.66530 5.92029 6.09475 6.37714 6.41921 6.60150 6.82272 6.88607 7.22066 7.40244 7.97313 8.76722 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.001989 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.933572 B =14077.186458 C =14495.541351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.150 3.850 3 H 0.085 0.915 4 C -0.126 4.126 5 C 0.090 3.910 6 H 0.063 0.937 7 N -0.684 5.684 8 C 0.064 3.936 9 C 0.447 3.553 10 O -0.617 6.617 11 N -0.590 5.590 12 C -0.329 4.329 13 H 0.053 0.947 14 C -0.018 4.018 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.256 1.256 18 H -0.277 1.277 19 H -0.229 1.229 20 C -0.122 4.122 21 C 0.107 3.893 22 N -0.605 5.605 23 C 0.515 3.485 24 O -0.561 6.561 25 C -0.167 4.167 26 C 0.139 3.861 27 C -0.185 4.185 28 C -0.139 4.139 29 O -0.583 6.583 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.343 0.657 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.068 0.932 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.057 0.943 51 H 0.088 0.912 52 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.933 8.528 27.006 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.046 3.954 3 H 0.103 0.897 4 C -0.164 4.164 5 C -0.019 4.019 6 H 0.080 0.920 7 N -0.316 5.316 8 C -0.068 4.068 9 C 0.235 3.765 10 O -0.501 6.501 11 N -0.232 5.232 12 C -0.458 4.458 13 H 0.071 0.929 14 C -0.216 4.216 15 N -0.576 5.576 16 Si 0.787 3.213 17 H -0.180 1.180 18 H -0.202 1.202 19 H -0.152 1.152 20 C -0.161 4.161 21 C -0.015 4.015 22 N -0.337 5.337 23 C 0.306 3.694 24 O -0.442 6.442 25 C -0.207 4.207 26 C 0.098 3.902 27 C -0.243 4.243 28 C -0.196 4.196 29 O -0.395 6.395 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.163 0.837 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.226 0.774 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.077 0.923 51 H 0.107 0.893 52 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.546 7.310 27.287 30.910 hybrid contribution 0.504 1.108 -1.539 1.963 sum -12.041 8.418 25.748 29.645 Atomic orbital electron populations 1.22049 0.93067 1.02379 1.00992 1.21226 0.95258 0.95566 0.83336 0.89735 1.22114 0.94873 1.01312 0.98137 1.21593 0.94156 0.96127 0.90071 0.91960 1.60111 1.01714 1.62657 1.07168 1.21679 0.91987 0.98088 0.95062 1.21067 0.81940 0.85142 0.88339 1.90553 1.56223 1.42120 1.61217 1.42028 1.12727 1.43251 1.25221 1.18993 0.98094 1.25322 1.03417 0.92860 1.26167 0.98576 0.99582 0.97288 1.69816 1.19225 1.44082 1.24452 0.85341 0.78375 0.78888 0.78747 1.18034 1.20200 1.15228 1.21936 1.02184 0.99109 0.92883 1.21998 0.78593 1.02023 0.98891 1.48296 1.08240 1.57233 1.19975 1.20993 0.85682 0.79280 0.83483 1.90589 1.18139 1.58008 1.77475 1.22568 1.00874 1.01963 0.95314 1.21020 0.90110 0.85580 0.93457 1.22630 0.99998 1.00657 1.00994 1.21807 1.01593 0.99583 0.96649 1.86399 1.76851 1.36468 1.39757 0.91235 0.93103 0.93451 0.90345 0.92308 0.83740 0.86554 0.90548 0.77407 0.91169 0.92278 0.89580 0.87148 0.89188 0.86244 0.86459 0.91288 0.92677 0.91732 0.91289 0.92346 0.89346 0.76350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 7.62 71.98 0.55 -1.76 16 2 C 0.15 2.29 3.48 44.97 0.16 2.45 16 3 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.13 -2.18 4.66 30.67 0.14 -2.04 16 5 C 0.09 1.58 2.46 44.94 0.11 1.69 16 6 H 0.06 0.91 7.80 -2.39 -0.02 0.89 16 7 N -0.68 -18.22 5.93 -495.46 -2.94 -21.16 16 8 C 0.06 1.77 5.96 85.56 0.51 2.28 16 9 C 0.45 19.45 7.82 87.66 0.69 20.13 16 10 O -0.62 -33.67 15.78 -3.09 -0.05 -33.72 16 11 N -0.59 -26.98 5.09 -306.99 -1.56 -28.54 16 12 C -0.33 -19.02 10.16 84.04 0.85 -18.17 16 13 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 14 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 15 N -0.94 -55.93 13.96 21.66 0.30 -55.63 16 16 Si 0.97 37.65 27.73 68.60 1.90 39.56 16 17 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 18 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 20 C -0.12 -1.75 5.59 30.67 0.17 -1.58 16 21 C 0.11 0.99 6.36 86.36 0.55 1.53 16 22 N -0.60 -8.26 2.97 -795.03 -2.36 -10.62 16 23 C 0.52 8.03 6.99 87.66 0.61 8.65 16 24 O -0.56 -11.37 7.29 15.39 0.11 -11.26 16 25 C -0.17 -1.82 3.33 29.85 0.10 -1.72 16 26 C 0.14 2.04 1.11 -10.79 -0.01 2.03 16 27 C -0.19 -3.01 8.50 71.98 0.61 -2.40 16 28 C -0.14 -1.55 8.84 71.98 0.64 -0.91 16 29 O -0.58 -11.61 12.95 -130.57 -1.69 -13.30 16 30 H 0.07 1.39 6.60 -2.39 -0.02 1.38 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.03 6.90 -2.38 -0.02 1.02 16 33 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.34 10.17 8.03 -89.69 -0.72 9.45 16 36 H 0.12 2.59 7.41 -2.39 -0.02 2.57 16 37 H 0.08 1.69 8.05 -2.39 -0.02 1.67 16 38 H 0.39 14.49 5.77 -92.71 -0.53 13.95 16 39 H 0.28 15.22 8.31 -92.70 -0.77 14.45 16 40 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.09 1.13 7.43 -2.39 -0.02 1.12 16 42 H 0.11 0.55 5.92 -2.39 -0.01 0.54 16 43 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 44 H 0.12 0.89 7.74 -2.39 -0.02 0.88 16 45 H 0.12 0.91 7.91 -2.39 -0.02 0.89 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 1.30 5.68 -2.39 -0.01 1.29 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.38 7.73 6.38 -74.06 -0.47 7.25 16 Total: -1.00 -78.56 397.65 -0.98 -79.54 By element: Atomic # 1 Polarization: 46.31 SS G_CDS: -0.84 Total: 45.47 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 6.14 Total: 9.67 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -6.56 Total: -115.96 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -1.63 Total: -58.28 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 1.90 Total: 39.56 kcal Total: -78.56 -0.98 -79.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277741168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.057 kcal (2) G-P(sol) polarization free energy of solvation -78.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds