Wall clock time and date at job start Wed Apr 1 2020 00:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47297 * 2 1 4 4 O 1.42904 * 109.46678 * 119.99498 * 2 1 3 5 5 C 1.42899 * 114.00010 * 90.00458 * 4 2 1 6 6 C 1.50702 * 109.46769 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00349 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99675 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99897 * 179.97438 * 8 6 5 10 10 H 1.08990 * 110.43516 * 32.46095 * 9 8 6 11 11 C 1.54895 * 110.48477 * 269.77438 * 9 8 6 12 12 C 1.54896 * 102.74637 * 203.38153 * 11 9 8 13 13 C 1.54261 * 104.19442 * 37.94432 * 12 11 9 14 14 H 1.08997 * 110.07423 * 95.69975 * 13 12 11 15 15 C 1.53007 * 110.02947 * 217.10536 * 13 12 11 16 16 N 1.46898 * 109.46873 * 292.16830 * 15 13 12 17 17 C 1.46903 * 110.99849 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47398 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99867 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00325 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99974 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00583 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00110 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99820 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00230 * 179.72236 * 23 21 20 26 26 H 1.48497 * 109.47173 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46866 * 120.00218 * 25 23 21 28 28 H 1.48501 * 109.47438 * 240.00339 * 25 23 21 29 29 C 1.53875 * 106.60323 * 336.38683 * 13 12 11 30 30 H 1.08994 * 109.47396 * 300.00883 * 1 2 3 31 31 H 1.09004 * 109.46735 * 60.00443 * 1 2 3 32 32 H 1.09000 * 109.46768 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47396 * 239.99117 * 2 1 3 34 34 H 1.08993 * 109.47635 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46866 * 299.99477 * 3 2 1 36 36 H 1.09000 * 109.47511 * 59.98790 * 3 2 1 37 37 H 1.08989 * 109.47212 * 59.99923 * 5 4 2 38 38 H 1.08999 * 109.46981 * 299.99720 * 5 4 2 39 39 H 0.96998 * 119.99723 * 0.02562 * 8 6 5 40 40 H 1.08999 * 110.75504 * 321.69085 * 11 9 8 41 41 H 1.09001 * 110.75199 * 84.87996 * 11 9 8 42 42 H 1.09002 * 110.48284 * 279.26316 * 12 11 9 43 43 H 1.09000 * 110.48107 * 156.62238 * 12 11 9 44 44 H 1.09007 * 109.47030 * 172.16715 * 15 13 12 45 45 H 1.09001 * 109.46922 * 52.17084 * 15 13 12 46 46 H 1.00898 * 111.00544 * 56.04865 * 16 15 13 47 47 H 1.09005 * 109.47310 * 59.99621 * 17 16 15 48 48 H 1.08999 * 109.47201 * 300.00515 * 17 16 15 49 49 H 0.97005 * 119.99841 * 0.02562 * 20 18 17 50 50 H 0.97000 * 120.00377 * 179.97438 * 24 23 21 51 51 H 1.08997 * 110.03169 * 119.28508 * 29 13 12 52 52 H 1.09001 * 110.03775 * 240.71798 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2000 -2.0781 0.9888 6 6 2.7001 -2.6832 2.2753 7 8 2.8739 -1.9808 3.2485 8 7 2.9542 -4.0050 2.3442 9 6 3.4408 -4.5932 3.5946 10 1 3.0281 -4.0609 4.4514 11 6 4.9891 -4.5748 3.6357 12 6 5.3180 -5.7116 4.6352 13 6 4.2718 -6.8021 4.3252 14 1 4.6920 -7.5403 3.6422 15 6 3.8242 -7.4822 5.6207 16 7 4.9415 -8.2554 6.1791 17 6 4.5477 -8.9234 7.4268 18 6 5.7165 -9.7054 7.9685 19 8 6.7735 -9.7066 7.3734 20 7 5.5871 -10.4043 9.1136 21 6 6.6503 -11.1161 9.6060 22 1 7.5917 -11.1165 9.0767 23 6 6.5171 -11.8362 10.7869 24 7 5.3719 -11.8354 11.4314 25 14 7.9634 -12.8123 11.4539 26 1 9.1277 -12.6551 10.5456 27 1 8.3188 -12.3095 12.8052 28 1 7.5936 -14.2479 11.5413 29 6 3.0783 -6.0911 3.6636 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6766 1.9564 0.8898 37 1 2.9319 -2.2467 0.1990 38 1 1.2538 -2.5433 0.7127 39 1 2.8155 -4.5667 1.5656 40 1 5.4043 -4.7934 2.6519 41 1 5.3544 -3.6158 4.0032 42 1 5.2103 -5.3603 5.6614 43 1 6.3257 -6.0901 4.4642 44 1 2.9890 -8.1505 5.4104 45 1 3.5114 -6.7248 6.3393 46 1 5.7505 -7.6698 6.3226 47 1 3.7174 -9.6016 7.2296 48 1 4.2402 -8.1757 8.1578 49 1 4.7415 -10.4042 9.5889 50 1 5.2787 -12.3383 12.2556 51 1 2.9199 -6.4836 2.6592 52 1 2.1802 -6.2305 4.2654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278553016.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:05 Heat of formation + Delta-G solvation = -137.744376 kcal Electronic energy + Delta-G solvation = -28665.255719 eV Core-core repulsion = 24470.894505 eV Total energy + Delta-G solvation = -4194.361214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.38760 -39.02284 -38.32796 -37.88643 -35.41401 -33.99890 -33.54224 -33.21994 -31.20844 -29.93295 -29.16883 -27.86021 -27.46419 -26.11649 -24.32925 -22.86752 -21.85065 -21.36489 -20.80253 -19.93041 -19.14710 -17.86020 -17.61759 -17.52371 -16.66805 -16.39040 -16.14360 -15.51810 -15.32519 -15.03154 -14.73844 -14.42677 -14.38064 -14.08713 -13.92944 -13.67045 -13.55563 -13.34758 -13.06565 -12.96007 -12.82674 -12.68428 -12.49944 -12.19829 -12.05719 -11.93911 -11.68500 -11.51202 -11.49310 -11.24713 -11.16640 -11.04897 -10.98799 -10.66496 -10.58359 -10.32974 -10.20678 -10.18161 -10.07458 -9.50208 -9.35460 -8.43354 -8.02354 -7.93638 -6.40099 -3.80770 2.26801 2.39447 3.17641 3.28068 3.35491 3.49074 3.93275 4.09588 4.19573 4.27929 4.33877 4.45073 4.49724 4.55763 4.59317 4.64641 4.67714 4.72622 5.08164 5.09289 5.18183 5.19964 5.21278 5.22997 5.27055 5.27962 5.33068 5.33774 5.44654 5.50388 5.56549 5.67289 5.71000 5.71528 5.82166 5.85587 5.90947 5.97210 6.02126 6.10597 6.23045 6.27408 6.33848 6.61385 7.12954 7.26483 7.57058 7.71203 7.88780 8.08604 8.63364 9.19858 9.56529 10.08069 10.77793 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.043818 B = 0.001305 C = 0.001298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.852684 B =21456.451808 C =21570.722978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.357 6.357 5 C 0.044 3.956 6 C 0.512 3.488 7 O -0.516 6.516 8 N -0.723 5.723 9 C 0.140 3.860 10 H 0.096 0.904 11 C -0.133 4.133 12 C -0.121 4.121 13 C -0.086 4.086 14 H 0.087 0.913 15 C 0.064 3.936 16 N -0.669 5.669 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C -0.123 4.123 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.400 0.600 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.028 0.972 46 H 0.349 0.651 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.071 0.929 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 20.572 -24.583 34.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.297 3.703 7 O -0.390 6.390 8 N -0.377 5.377 9 C 0.036 3.964 10 H 0.114 0.886 11 C -0.172 4.172 12 C -0.159 4.159 13 C -0.106 4.106 14 H 0.105 0.895 15 C -0.065 4.065 16 N -0.302 5.302 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.162 4.162 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.234 0.766 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.046 0.954 46 H 0.168 0.832 47 H 0.103 0.897 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.090 0.910 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.303 20.549 -24.295 33.768 hybrid contribution -0.157 -0.299 0.697 0.774 sum -11.460 20.250 -23.599 33.141 Atomic orbital electron populations 1.22320 0.95760 1.02424 1.02919 1.22186 0.93835 0.94106 0.87738 1.21857 1.02001 0.94165 1.02725 1.88082 1.86598 1.17595 1.35310 1.22235 1.01170 0.84375 0.95862 1.20274 0.77902 0.82336 0.89775 1.90751 1.50437 1.60360 1.37488 1.45992 1.68439 1.08107 1.15127 1.21932 0.94305 0.93545 0.86611 0.88624 1.22872 0.94867 0.99354 1.00057 1.22420 0.99633 0.94704 0.99187 1.21718 0.94707 0.96992 0.97144 0.89466 1.22115 0.94270 0.95419 0.94714 1.60096 1.06866 1.34844 1.28362 1.21674 0.98024 0.97845 0.90747 1.19833 0.89526 0.84773 0.83221 1.90520 1.29347 1.66881 1.59997 1.41871 1.14386 1.42995 1.20860 1.19760 0.93354 1.24089 1.05629 0.87873 1.25258 0.97966 0.98198 0.96526 1.69621 1.24207 1.42651 1.17884 0.85805 0.80957 0.78976 0.78640 1.19206 1.20789 1.20752 1.22432 0.99066 0.93200 1.01489 0.91492 0.91444 0.92503 0.92035 0.91829 0.91076 0.91525 0.90297 0.90388 0.76612 0.91180 0.91166 0.91398 0.90599 0.91152 0.95430 0.83150 0.89667 0.93946 0.77470 0.91949 0.91038 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 9.53 37.16 0.35 -0.51 16 2 C 0.08 0.46 3.34 -26.73 -0.09 0.38 16 3 C -0.15 -0.81 9.56 37.16 0.36 -0.45 16 4 O -0.36 -3.31 9.52 -55.14 -0.52 -3.84 16 5 C 0.04 0.28 6.23 36.01 0.22 0.51 16 6 C 0.51 4.91 7.91 -10.98 -0.09 4.83 16 7 O -0.52 -7.57 16.15 -14.35 -0.23 -7.80 16 8 N -0.72 -5.07 5.16 -52.20 -0.27 -5.34 16 9 C 0.14 1.21 3.22 -66.26 -0.21 1.00 16 10 H 0.10 1.03 7.55 -51.93 -0.39 0.64 16 11 C -0.13 -1.22 6.58 -24.73 -0.16 -1.38 16 12 C -0.12 -1.22 5.56 -25.07 -0.14 -1.36 16 13 C -0.09 -0.84 3.15 -89.50 -0.28 -1.13 16 14 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 15 C 0.06 0.77 4.80 -3.82 -0.02 0.75 16 16 N -0.67 -10.77 6.13 -115.05 -0.70 -11.48 16 17 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 18 C 0.44 10.55 7.82 -10.99 -0.09 10.46 16 19 O -0.58 -16.01 15.78 5.54 0.09 -15.93 16 20 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 25 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 29 C -0.12 -0.93 6.19 -25.61 -0.16 -1.09 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.26 7.87 -51.93 -0.41 -0.15 16 33 H 0.06 0.25 7.79 -51.93 -0.40 -0.15 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.32 8.08 -51.94 -0.42 -0.10 16 38 H 0.08 0.32 7.87 -51.93 -0.41 -0.09 16 39 H 0.40 1.51 8.37 -40.82 -0.34 1.17 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.73 7.76 -51.93 -0.40 0.32 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.32 8.00 -51.93 -0.42 -0.10 16 46 H 0.35 5.83 7.67 -39.29 -0.30 5.53 16 47 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 48 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.07 0.42 7.73 -51.93 -0.40 0.02 16 52 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 LS Contribution 424.61 15.07 6.40 6.40 Total: -1.00 -35.32 424.61 -9.38 -44.70 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -9.20 Total: 10.86 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -0.57 Total: 4.79 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.31 Total: -55.35 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.67 Total: -27.57 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -35.32 -9.38 -44.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278553016.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.047 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds