Wall clock time and date at job start Wed Apr 1 2020 00:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47297 * 2 1 4 4 O 1.42904 * 109.46678 * 119.99498 * 2 1 3 5 5 C 1.42899 * 114.00010 * 90.00458 * 4 2 1 6 6 C 1.50702 * 109.46769 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00349 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99675 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99897 * 179.97438 * 8 6 5 10 10 H 1.08990 * 110.43516 * 32.46095 * 9 8 6 11 11 C 1.54895 * 110.48477 * 269.77438 * 9 8 6 12 12 C 1.54896 * 102.74637 * 203.38153 * 11 9 8 13 13 C 1.54261 * 104.19442 * 37.94432 * 12 11 9 14 14 H 1.08997 * 110.07423 * 95.69975 * 13 12 11 15 15 C 1.53007 * 110.02947 * 217.10536 * 13 12 11 16 16 N 1.46898 * 109.46873 * 292.16830 * 15 13 12 17 17 C 1.46903 * 110.99849 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47398 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99867 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00325 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99974 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00583 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00110 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99820 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00230 * 179.72236 * 23 21 20 26 26 H 1.48497 * 109.47173 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46866 * 120.00218 * 25 23 21 28 28 H 1.48501 * 109.47438 * 240.00339 * 25 23 21 29 29 C 1.53875 * 106.60323 * 336.38683 * 13 12 11 30 30 H 1.08994 * 109.47396 * 300.00883 * 1 2 3 31 31 H 1.09004 * 109.46735 * 60.00443 * 1 2 3 32 32 H 1.09000 * 109.46768 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47396 * 239.99117 * 2 1 3 34 34 H 1.08993 * 109.47635 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46866 * 299.99477 * 3 2 1 36 36 H 1.09000 * 109.47511 * 59.98790 * 3 2 1 37 37 H 1.08989 * 109.47212 * 59.99923 * 5 4 2 38 38 H 1.08999 * 109.46981 * 299.99720 * 5 4 2 39 39 H 0.96998 * 119.99723 * 0.02562 * 8 6 5 40 40 H 1.08999 * 110.75504 * 321.69085 * 11 9 8 41 41 H 1.09001 * 110.75199 * 84.87996 * 11 9 8 42 42 H 1.09002 * 110.48284 * 279.26316 * 12 11 9 43 43 H 1.09000 * 110.48107 * 156.62238 * 12 11 9 44 44 H 1.09007 * 109.47030 * 172.16715 * 15 13 12 45 45 H 1.09001 * 109.46922 * 52.17084 * 15 13 12 46 46 H 1.00898 * 111.00544 * 56.04865 * 16 15 13 47 47 H 1.09005 * 109.47310 * 59.99621 * 17 16 15 48 48 H 1.08999 * 109.47201 * 300.00515 * 17 16 15 49 49 H 0.97005 * 119.99841 * 0.02562 * 20 18 17 50 50 H 0.97000 * 120.00377 * 179.97438 * 24 23 21 51 51 H 1.08997 * 110.03169 * 119.28508 * 29 13 12 52 52 H 1.09001 * 110.03775 * 240.71798 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2000 -2.0781 0.9888 6 6 2.7001 -2.6832 2.2753 7 8 2.8739 -1.9808 3.2485 8 7 2.9542 -4.0050 2.3442 9 6 3.4408 -4.5932 3.5946 10 1 3.0281 -4.0609 4.4514 11 6 4.9891 -4.5748 3.6357 12 6 5.3180 -5.7116 4.6352 13 6 4.2718 -6.8021 4.3252 14 1 4.6920 -7.5403 3.6422 15 6 3.8242 -7.4822 5.6207 16 7 4.9415 -8.2554 6.1791 17 6 4.5477 -8.9234 7.4268 18 6 5.7165 -9.7054 7.9685 19 8 6.7735 -9.7066 7.3734 20 7 5.5871 -10.4043 9.1136 21 6 6.6503 -11.1161 9.6060 22 1 7.5917 -11.1165 9.0767 23 6 6.5171 -11.8362 10.7869 24 7 5.3719 -11.8354 11.4314 25 14 7.9634 -12.8123 11.4539 26 1 9.1277 -12.6551 10.5456 27 1 8.3188 -12.3095 12.8052 28 1 7.5936 -14.2479 11.5413 29 6 3.0783 -6.0911 3.6636 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6766 1.9564 0.8898 37 1 2.9319 -2.2467 0.1990 38 1 1.2538 -2.5433 0.7127 39 1 2.8155 -4.5667 1.5656 40 1 5.4043 -4.7934 2.6519 41 1 5.3544 -3.6158 4.0032 42 1 5.2103 -5.3603 5.6614 43 1 6.3257 -6.0901 4.4642 44 1 2.9890 -8.1505 5.4104 45 1 3.5114 -6.7248 6.3393 46 1 5.7505 -7.6698 6.3226 47 1 3.7174 -9.6016 7.2296 48 1 4.2402 -8.1757 8.1578 49 1 4.7415 -10.4042 9.5889 50 1 5.2787 -12.3383 12.2556 51 1 2.9199 -6.4836 2.6592 52 1 2.1802 -6.2305 4.2654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278553016.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:04 Heat of formation + Delta-G solvation = -164.160172 kcal Electronic energy + Delta-G solvation = -28666.401193 eV Core-core repulsion = 24470.894505 eV Total energy + Delta-G solvation = -4195.506689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.10911 -40.20227 -39.55991 -38.73723 -36.61069 -35.84080 -34.57643 -33.68558 -33.25847 -30.91748 -29.85554 -28.64595 -28.08334 -27.34832 -25.90910 -24.02508 -22.27029 -22.07539 -21.54092 -21.16042 -20.58760 -19.88772 -18.26760 -18.08893 -17.89950 -17.24731 -16.97453 -16.88996 -16.47560 -16.10390 -15.84933 -15.70681 -15.56298 -15.18258 -15.06374 -14.66521 -14.52257 -14.32259 -13.98399 -13.86894 -13.53572 -13.51172 -13.40835 -13.11224 -13.06738 -12.98610 -12.88244 -12.73824 -12.46635 -12.40204 -12.33846 -12.11673 -11.98133 -11.76107 -11.64325 -11.55409 -11.51210 -11.39146 -10.85337 -10.63895 -10.34527 -10.06329 -10.01646 -9.30806 -8.46980 -5.95771 1.36626 1.41933 1.56283 1.56899 1.83255 2.04915 2.29337 2.92856 3.02997 3.20387 3.51558 3.54824 3.71433 3.80579 3.87059 4.02083 4.10413 4.21597 4.28526 4.29924 4.33551 4.35745 4.38338 4.49356 4.50536 4.55573 4.59850 4.62248 4.67852 4.74929 4.82286 4.87328 4.90840 4.91372 4.94072 5.04558 5.10229 5.18348 5.29161 5.30656 5.32991 5.40976 5.49497 5.56621 5.90682 6.12731 6.17801 6.42639 6.58649 6.60011 7.12482 7.25919 7.55996 8.11309 8.70704 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.043818 B = 0.001305 C = 0.001298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.852684 B =21456.451808 C =21570.722978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 C -0.152 4.152 4 O -0.396 6.396 5 C 0.045 3.955 6 C 0.507 3.493 7 O -0.578 6.578 8 N -0.705 5.705 9 C 0.143 3.857 10 H 0.070 0.930 11 C -0.127 4.127 12 C -0.121 4.121 13 C -0.080 4.080 14 H 0.084 0.916 15 C 0.065 3.935 16 N -0.682 5.682 17 C 0.063 3.937 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.270 1.270 29 C -0.110 4.110 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.419 0.581 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.033 0.967 46 H 0.342 0.658 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.098 0.902 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.316 19.994 -26.508 35.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 C -0.209 4.209 4 O -0.316 6.316 5 C -0.034 4.034 6 C 0.293 3.707 7 O -0.456 6.456 8 N -0.359 5.359 9 C 0.038 3.962 10 H 0.088 0.912 11 C -0.165 4.165 12 C -0.159 4.159 13 C -0.099 4.099 14 H 0.103 0.897 15 C -0.064 4.064 16 N -0.314 5.314 17 C -0.069 4.069 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.195 1.195 29 C -0.149 4.149 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.257 0.743 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.051 0.949 46 H 0.161 0.839 47 H 0.123 0.877 48 H 0.080 0.920 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.117 0.883 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.668 19.946 -26.260 35.326 hybrid contribution 0.250 -0.087 1.259 1.287 sum -12.417 19.859 -25.001 34.258 Atomic orbital electron populations 1.22309 0.95173 1.02830 1.02888 1.22393 0.94341 0.94034 0.87609 1.21901 1.01557 0.94456 1.02983 1.88046 1.87099 1.19093 1.37367 1.22393 1.03279 0.83357 0.94421 1.20975 0.76880 0.82581 0.90214 1.90726 1.53266 1.61858 1.39794 1.45825 1.67119 1.07703 1.15282 1.21755 0.93670 0.94191 0.86632 0.91160 1.22796 0.95450 0.97989 1.00290 1.22377 0.99479 0.95236 0.98850 1.21651 0.95425 0.96632 0.96186 0.89719 1.22241 0.93195 0.95472 0.95467 1.60133 1.08124 1.35802 1.27373 1.21547 0.95438 0.98017 0.91902 1.20913 0.90652 0.83885 0.82128 1.90486 1.31572 1.68027 1.60896 1.41938 1.14031 1.43434 1.21629 1.19717 0.93541 1.26344 1.06821 0.90341 1.26036 1.00600 0.98438 0.96097 1.69678 1.25471 1.42838 1.18168 0.84872 0.77555 0.77917 0.78003 1.19771 1.19617 1.19528 1.22343 0.98006 0.91662 1.02882 0.93304 0.89672 0.91872 0.89652 0.92550 0.88881 0.93195 0.87310 0.87478 0.74252 0.89868 0.93086 0.92526 0.91469 0.89917 0.94879 0.83929 0.87662 0.91960 0.76978 0.91294 0.88340 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 9.53 71.98 0.69 -0.75 16 2 C 0.07 0.75 3.34 30.59 0.10 0.85 16 3 C -0.15 -1.54 9.56 71.98 0.69 -0.85 16 4 O -0.40 -7.07 9.52 -129.94 -1.24 -8.30 16 5 C 0.04 0.49 6.23 71.24 0.44 0.93 16 6 C 0.51 9.30 7.91 87.66 0.69 9.99 16 7 O -0.58 -17.56 16.15 16.03 0.26 -17.30 16 8 N -0.71 -8.54 5.16 -437.44 -2.26 -10.79 16 9 C 0.14 2.30 3.22 46.07 0.15 2.45 16 10 H 0.07 1.54 7.55 -2.39 -0.02 1.52 16 11 C -0.13 -2.27 6.58 31.89 0.21 -2.06 16 12 C -0.12 -2.41 5.56 31.67 0.18 -2.24 16 13 C -0.08 -1.43 3.15 -10.07 -0.03 -1.46 16 14 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 15 C 0.06 1.43 4.80 86.31 0.41 1.84 16 16 N -0.68 -21.37 6.13 -517.90 -3.17 -24.54 16 17 C 0.06 2.20 6.17 85.56 0.53 2.73 16 18 C 0.44 21.11 7.82 87.66 0.69 21.80 16 19 O -0.62 -35.06 15.78 -3.08 -0.05 -35.11 16 20 N -0.57 -29.81 5.29 -306.98 -1.62 -31.43 16 21 C -0.33 -19.25 9.68 84.04 0.81 -18.44 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -50.02 13.05 21.66 0.28 -49.74 16 25 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 C -0.11 -1.38 6.19 31.32 0.19 -1.19 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.43 7.87 -2.39 -0.02 0.41 16 33 H 0.09 0.44 7.79 -2.39 -0.02 0.42 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.11 0.51 8.08 -2.39 -0.02 0.49 16 38 H 0.11 0.52 7.87 -2.39 -0.02 0.50 16 39 H 0.42 1.74 8.37 -92.71 -0.78 0.96 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.24 7.76 -2.39 -0.02 1.23 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.03 0.71 8.00 -2.39 -0.02 0.69 16 46 H 0.34 11.48 7.67 -89.70 -0.69 10.79 16 47 H 0.11 3.26 8.14 -2.38 -0.02 3.24 16 48 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.40 19.55 7.90 -92.70 -0.73 18.81 16 50 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 51 H 0.10 0.75 7.73 -2.39 -0.02 0.74 16 52 H 0.08 0.97 7.67 -2.39 -0.02 0.96 16 Total: -1.00 -79.73 424.61 -0.82 -80.55 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -1.27 Total: 37.98 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 6.22 Total: 13.41 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -6.77 Total: -116.50 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -1.03 Total: -60.71 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -79.73 -0.82 -80.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278553016.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.614 kcal (2) G-P(sol) polarization free energy of solvation -79.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds