Wall clock time and date at job start Wed Apr 1 2020 00:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47242 * 2 1 4 4 O 1.42907 * 109.47000 * 119.99788 * 2 1 3 5 5 C 1.42901 * 113.99978 * 149.99618 * 4 2 1 6 6 C 1.50697 * 109.46878 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00448 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99737 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00157 * 180.02562 * 8 6 5 10 10 H 1.09005 * 110.67057 * 328.23914 * 9 8 6 11 11 C 1.54891 * 110.91324 * 91.57823 * 9 8 6 12 12 C 1.54267 * 104.19324 * 156.33331 * 11 9 8 13 13 C 1.53876 * 106.59870 * 336.39035 * 12 11 9 14 14 H 1.08998 * 110.02768 * 119.28860 * 13 12 11 15 15 C 1.53005 * 110.03214 * 240.66584 * 13 12 11 16 16 N 1.46897 * 109.46955 * 293.54987 * 15 13 12 17 17 C 1.46904 * 110.99752 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47074 * 179.97438 * 17 16 15 19 19 O 1.21291 * 120.00422 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99849 * 179.97438 * 18 17 16 21 21 C 1.37106 * 120.00022 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99726 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00216 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00085 * 180.02562 * 23 21 20 25 25 Si 1.86810 * 119.99680 * 0.02562 * 23 21 20 26 26 H 1.48492 * 109.47061 * 89.99833 * 25 23 21 27 27 H 1.48506 * 109.46588 * 209.99808 * 25 23 21 28 28 H 1.48494 * 109.46958 * 329.99599 * 25 23 21 29 29 C 1.54261 * 106.59990 * 0.02562 * 13 12 11 30 30 H 1.08997 * 109.47120 * 300.00582 * 1 2 3 31 31 H 1.09001 * 109.46807 * 59.99823 * 1 2 3 32 32 H 1.09000 * 109.47217 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47590 * 239.99668 * 2 1 3 34 34 H 1.09000 * 109.47188 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47276 * 299.99741 * 3 2 1 36 36 H 1.09008 * 109.47283 * 60.00090 * 3 2 1 37 37 H 1.09007 * 109.46515 * 60.00559 * 5 4 2 38 38 H 1.08997 * 109.47761 * 300.00720 * 5 4 2 39 39 H 0.97005 * 120.00091 * 0.02562 * 8 6 5 40 40 H 1.09004 * 110.48613 * 37.65703 * 11 9 8 41 41 H 1.08994 * 110.48745 * 275.01121 * 11 9 8 42 42 H 1.08995 * 110.03032 * 217.10762 * 12 11 9 43 43 H 1.08998 * 110.03405 * 95.67701 * 12 11 9 44 44 H 1.09000 * 109.46923 * 53.54649 * 15 13 12 45 45 H 1.08998 * 109.46544 * 173.54794 * 15 13 12 46 46 H 1.00900 * 111.00256 * 56.04801 * 16 15 13 47 47 H 1.09009 * 109.46707 * 299.99732 * 17 16 15 48 48 H 1.08997 * 109.47235 * 59.99632 * 17 16 15 49 49 H 0.97001 * 120.00624 * 0.02562 * 20 18 17 50 50 H 0.97002 * 119.99556 * 180.02562 * 24 23 21 51 51 H 1.09000 * 110.48928 * 142.28640 * 29 13 12 52 52 H 1.09001 * 110.48691 * 264.79667 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2659 -1.3246 0.9887 6 6 3.6691 -1.9989 2.2747 7 8 2.9487 -1.9293 3.2478 8 7 4.8305 -2.6792 2.3434 9 6 5.2224 -3.3353 3.5934 10 1 4.8492 -2.7790 4.4533 11 6 4.7225 -4.8009 3.6289 12 6 5.6738 -5.5010 4.6212 13 6 6.9698 -4.6719 4.6471 14 1 7.1507 -4.2933 5.6531 15 6 8.1509 -5.5309 4.1907 16 7 8.3929 -6.5936 5.1756 17 6 9.5229 -7.4400 4.7699 18 6 9.7409 -8.5157 5.8025 19 8 9.0251 -8.5721 6.7800 20 7 10.7307 -9.4158 5.6392 21 6 10.9294 -10.3942 6.5789 22 1 10.2925 -10.4438 7.4497 23 6 11.9502 -11.3218 6.4110 24 7 12.1403 -12.2598 7.3114 25 14 13.0523 -11.2354 4.9051 26 1 14.2232 -10.3704 5.1977 27 1 13.5203 -12.6006 4.5553 28 1 12.2891 -10.6666 3.7653 29 6 6.7607 -3.4965 3.6702 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 4.0199 -0.5874 0.7126 38 1 3.1809 -2.0707 0.1987 39 1 5.4070 -2.7346 1.5652 40 1 4.8006 -5.2546 2.6408 41 1 3.6950 -4.8449 3.9898 42 1 5.8861 -6.5151 4.2826 43 1 5.2258 -5.5247 5.6145 44 1 7.9226 -5.9776 3.2230 45 1 9.0407 -4.9077 4.1025 46 1 7.5615 -7.1461 5.3232 47 1 9.3046 -7.8999 3.8060 48 1 10.4222 -6.8298 4.6860 49 1 11.3030 -9.3710 4.8573 50 1 12.8532 -12.9072 7.1942 51 1 7.2207 -2.5890 4.0612 52 1 7.1698 -3.7383 2.6892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278553017.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:07 Heat of formation + Delta-G solvation = -159.346045 kcal Electronic energy + Delta-G solvation = -28716.708558 eV Core-core repulsion = 24521.410625 eV Total energy + Delta-G solvation = -4195.297933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.09903 -40.32772 -39.58011 -38.75159 -36.61833 -35.87930 -34.59565 -33.74364 -33.67589 -30.94186 -29.85282 -28.73470 -28.09411 -27.38046 -25.73923 -24.02203 -22.27031 -22.05579 -21.68335 -21.27752 -20.46492 -20.13474 -18.23774 -18.15834 -17.84712 -17.32485 -16.99035 -16.78878 -16.74289 -16.37055 -15.83630 -15.64699 -15.36096 -15.17644 -15.00172 -14.67243 -14.55357 -14.34492 -14.12911 -13.88265 -13.77393 -13.50773 -13.47109 -13.14200 -13.07172 -13.06411 -12.89723 -12.75969 -12.51912 -12.40503 -12.34057 -12.02507 -11.95489 -11.69178 -11.64292 -11.56141 -11.50087 -11.36987 -10.86420 -10.63892 -10.42692 -10.24351 -10.07092 -9.26488 -8.40739 -6.02048 1.30731 1.37002 1.45745 1.56493 1.82007 1.96794 2.24084 2.75531 3.01022 3.15721 3.44557 3.54187 3.66589 3.77733 3.99148 4.02187 4.10253 4.17521 4.21648 4.28104 4.29450 4.32904 4.38266 4.45287 4.47788 4.54966 4.59512 4.64997 4.69404 4.75007 4.82266 4.85850 4.91153 4.91468 4.94074 5.09068 5.12376 5.18499 5.29145 5.31815 5.33051 5.46435 5.53780 5.57134 5.92354 6.11304 6.17776 6.43221 6.58657 6.60779 6.88812 7.25822 7.40558 7.97792 8.77101 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.035807 B = 0.001360 C = 0.001341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.784792 B =20577.822790 C =20869.397867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 C -0.174 4.174 4 O -0.397 6.397 5 C 0.045 3.955 6 C 0.507 3.493 7 O -0.578 6.578 8 N -0.704 5.704 9 C 0.141 3.859 10 H 0.071 0.929 11 C -0.127 4.127 12 C -0.120 4.120 13 C -0.084 4.084 14 H 0.069 0.931 15 C 0.071 3.929 16 N -0.693 5.693 17 C 0.063 3.937 18 C 0.446 3.554 19 O -0.617 6.617 20 N -0.590 5.590 21 C -0.332 4.332 22 H 0.053 0.947 23 C -0.015 4.015 24 N -0.936 5.936 25 Si 0.967 3.033 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.229 1.229 29 C -0.107 4.107 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.420 0.580 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.342 0.658 47 H 0.077 0.923 48 H 0.116 0.884 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.082 0.918 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.709 27.211 -27.060 40.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.316 6.316 5 C -0.034 4.034 6 C 0.294 3.706 7 O -0.457 6.457 8 N -0.358 5.358 9 C 0.036 3.964 10 H 0.089 0.911 11 C -0.166 4.166 12 C -0.158 4.158 13 C -0.104 4.104 14 H 0.088 0.912 15 C -0.058 4.058 16 N -0.326 5.326 17 C -0.070 4.070 18 C 0.234 3.766 19 O -0.501 6.501 20 N -0.232 5.232 21 C -0.461 4.461 22 H 0.071 0.929 23 C -0.213 4.213 24 N -0.576 5.576 25 Si 0.787 3.213 26 H -0.181 1.181 27 H -0.201 1.201 28 H -0.152 1.152 29 C -0.145 4.145 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.258 0.742 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.161 0.839 47 H 0.095 0.905 48 H 0.134 0.866 49 H 0.226 0.774 50 H 0.089 0.911 51 H 0.101 0.899 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.320 27.459 -25.066 39.842 hybrid contribution 0.454 -1.249 -0.821 1.562 sum -13.866 26.210 -25.887 39.362 Atomic orbital electron populations 1.21903 0.93459 1.02574 1.02982 1.22392 0.95390 0.92977 0.87608 1.22308 1.01873 0.96128 1.02882 1.88047 1.35822 1.70389 1.37363 1.22396 0.88310 0.98343 0.94400 1.20981 0.81116 0.78341 0.90199 1.90730 1.53325 1.61803 1.39809 1.45714 1.21633 1.53067 1.15346 1.21854 0.95524 0.92316 0.86685 0.91097 1.22662 0.98420 0.95215 1.00266 1.22132 0.95363 0.99104 0.99197 1.21644 0.93690 0.95059 0.99974 0.91198 1.22134 0.98628 0.92526 0.92474 1.60075 1.08613 1.15855 1.48029 1.21633 0.97587 0.93138 0.94596 1.21099 0.81957 0.84456 0.89091 1.90547 1.49327 1.75908 1.34338 1.42028 1.31134 1.27677 1.22391 1.19020 1.16265 1.07615 1.03174 0.92888 1.26142 0.98794 0.94419 1.01991 1.69813 1.33211 1.17312 1.37281 0.85340 0.78844 0.79137 0.78020 1.18120 1.20066 1.15239 1.22525 0.92812 0.98167 1.01008 0.93185 0.88897 0.92572 0.89647 0.91835 0.89684 0.93308 0.87411 0.87315 0.74190 0.89940 0.93335 0.91787 0.92790 0.93413 0.89604 0.83901 0.90483 0.86627 0.77383 0.91148 0.89932 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.56 71.98 0.69 -0.80 16 2 C 0.07 0.71 3.34 30.59 0.10 0.82 16 3 C -0.17 -1.35 9.53 71.98 0.69 -0.67 16 4 O -0.40 -6.86 9.52 -129.94 -1.24 -8.10 16 5 C 0.04 0.46 6.23 71.23 0.44 0.90 16 6 C 0.51 8.95 7.91 87.66 0.69 9.65 16 7 O -0.58 -17.27 16.14 16.02 0.26 -17.01 16 8 N -0.70 -7.86 5.19 -436.47 -2.26 -10.13 16 9 C 0.14 2.16 3.26 46.27 0.15 2.32 16 10 H 0.07 1.53 7.55 -2.38 -0.02 1.51 16 11 C -0.13 -2.17 6.52 31.67 0.21 -1.96 16 12 C -0.12 -2.29 5.95 31.32 0.19 -2.11 16 13 C -0.08 -1.44 3.16 -10.07 -0.03 -1.47 16 14 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 15 C 0.07 1.27 4.82 86.31 0.42 1.68 16 16 N -0.69 -19.58 6.12 -517.92 -3.17 -22.75 16 17 C 0.06 1.84 6.17 85.55 0.53 2.37 16 18 C 0.45 20.09 7.82 87.66 0.69 20.78 16 19 O -0.62 -34.63 15.78 -3.06 -0.05 -34.68 16 20 N -0.59 -27.72 5.09 -306.99 -1.56 -29.28 16 21 C -0.33 -19.53 10.16 84.04 0.85 -18.68 16 22 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 23 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.94 -56.60 13.96 21.66 0.30 -56.29 16 25 Si 0.97 38.30 27.74 68.60 1.90 40.21 16 26 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 27 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 28 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 29 C -0.11 -1.18 5.98 31.66 0.19 -0.99 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.40 7.79 -2.39 -0.02 0.38 16 34 H 0.06 0.40 7.87 -2.39 -0.02 0.38 16 35 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.11 0.45 7.87 -2.38 -0.02 0.43 16 38 H 0.11 0.44 8.08 -2.39 -0.02 0.43 16 39 H 0.42 1.26 8.57 -92.70 -0.79 0.47 16 40 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.27 6.89 -2.39 -0.02 1.25 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.34 10.64 7.10 -89.69 -0.64 10.00 16 47 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 48 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.39 14.94 5.76 -92.71 -0.53 14.40 16 50 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 51 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.10 0.61 7.74 -2.39 -0.02 0.59 16 Total: -1.00 -89.01 421.07 -0.65 -89.66 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -1.10 Total: 36.90 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 6.26 Total: 11.46 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -6.70 Total: -118.45 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -1.03 Total: -59.78 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 1.90 Total: 40.21 kcal Total: -89.01 -0.65 -89.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278553017.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.683 kcal (2) G-P(sol) polarization free energy of solvation -89.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds