Wall clock time and date at job start Wed Apr 1 2020 00:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47283 * 2 1 4 4 O 1.42904 * 109.46947 * 119.99870 * 2 1 3 5 5 C 1.42898 * 113.99615 * 149.99675 * 4 2 1 6 6 C 1.50703 * 109.46904 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00132 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00092 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00339 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.81381 * 36.88316 * 9 8 6 11 11 C 1.54887 * 110.75537 * 273.55280 * 9 8 6 12 12 C 1.54268 * 104.19363 * 203.73857 * 11 9 8 13 13 C 1.53875 * 106.59808 * 23.61176 * 12 11 9 14 14 H 1.09004 * 110.02691 * 240.66860 * 13 12 11 15 15 C 1.52998 * 110.03472 * 119.28682 * 13 12 11 16 16 N 1.46896 * 109.47624 * 66.44978 * 15 13 12 17 17 C 1.46899 * 111.00338 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.46987 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00006 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99538 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99773 * 179.72591 * 20 18 17 22 22 H 1.08002 * 119.99671 * 0.27660 * 21 20 18 23 23 C 1.38950 * 120.00030 * 180.27703 * 21 20 18 24 24 N 1.31413 * 119.99930 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47112 * 89.99702 * 25 23 21 27 27 H 1.48498 * 109.47011 * 209.99970 * 25 23 21 28 28 H 1.48494 * 109.47201 * 329.99943 * 25 23 21 29 29 C 1.54259 * 106.59774 * 359.97438 * 13 12 11 30 30 H 1.09004 * 109.46636 * 300.00034 * 1 2 3 31 31 H 1.08998 * 109.47034 * 60.00158 * 1 2 3 32 32 H 1.09004 * 109.47109 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47107 * 239.99722 * 2 1 3 34 34 H 1.08999 * 109.46812 * 59.99877 * 3 2 1 35 35 H 1.08998 * 109.46831 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.46957 * 299.99889 * 3 2 1 37 37 H 1.09003 * 109.47077 * 60.00537 * 5 4 2 38 38 H 1.08997 * 109.47569 * 300.00114 * 5 4 2 39 39 H 0.97000 * 120.00087 * 0.02562 * 8 6 5 40 40 H 1.08997 * 110.48938 * 85.06535 * 11 9 8 41 41 H 1.09000 * 110.59858 * 322.47076 * 11 9 8 42 42 H 1.08993 * 110.03313 * 264.32451 * 12 11 9 43 43 H 1.09002 * 110.07381 * 142.91643 * 12 11 9 44 44 H 1.09004 * 109.46677 * 306.45142 * 15 13 12 45 45 H 1.09004 * 109.46850 * 186.45441 * 15 13 12 46 46 H 1.00898 * 110.99977 * 303.96136 * 16 15 13 47 47 H 1.09003 * 109.46477 * 60.00383 * 17 16 15 48 48 H 1.08993 * 109.47002 * 300.00709 * 17 16 15 49 49 H 0.97001 * 120.00485 * 0.02562 * 20 18 17 50 50 H 0.96999 * 119.99993 * 179.97438 * 24 23 21 51 51 H 1.09003 * 110.48748 * 95.07740 * 29 13 12 52 52 H 1.09003 * 110.49054 * 217.71389 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2659 -1.3245 0.9886 6 6 3.6699 -1.9978 2.2750 7 8 2.9498 -1.9276 3.2483 8 7 4.8308 -2.6789 2.3434 9 6 5.2233 -3.3339 3.5937 10 1 4.3540 -3.7515 4.1017 11 6 5.9769 -2.3457 4.5181 12 6 6.8231 -3.2544 5.4336 13 6 7.0184 -4.5803 4.6776 14 1 6.5879 -5.4027 5.2490 15 6 8.5083 -4.8325 4.4379 16 7 9.1799 -5.0586 5.7247 17 6 10.6153 -5.3054 5.5331 18 6 11.2691 -5.5318 6.8719 19 8 10.6045 -5.4920 7.8858 20 7 12.5920 -5.7795 6.9424 21 6 13.1879 -5.9799 8.1609 22 1 12.5963 -5.9436 9.0637 23 6 14.5528 -6.2296 8.2341 24 7 15.1240 -6.4211 9.4020 25 14 15.5760 -6.2915 6.6725 26 1 16.0928 -4.9337 6.3651 27 1 16.7162 -7.2234 6.8644 28 1 14.7325 -6.7666 5.5465 29 6 6.2835 -4.4313 3.3295 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 4.0200 -0.5874 0.7125 38 1 3.1809 -2.0707 0.1987 39 1 5.4066 -2.7354 1.5649 40 1 5.2709 -1.7612 5.1081 41 1 6.6202 -1.6882 3.9333 42 1 6.2972 -3.4332 6.3713 43 1 7.7898 -2.7910 5.6304 44 1 8.9488 -3.9656 3.9455 45 1 8.6307 -5.7113 3.8047 46 1 9.0264 -4.2847 6.3536 47 1 11.0708 -4.4420 5.0481 48 1 10.7520 -6.1875 4.9077 49 1 13.1234 -5.8117 6.1316 50 1 16.0768 -6.5958 9.4531 51 1 6.9762 -4.1122 2.5507 52 1 5.8017 -5.3688 3.0519 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278553018.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:12 Heat of formation + Delta-G solvation = -130.195793 kcal Electronic energy + Delta-G solvation = -28741.077646 eV Core-core repulsion = 24547.043763 eV Total energy + Delta-G solvation = -4194.033883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40708 -39.07747 -38.47349 -37.98042 -35.50820 -34.05884 -33.61725 -33.24217 -31.66022 -30.01439 -29.19519 -27.92464 -27.54952 -26.23178 -24.24864 -22.92093 -21.86636 -21.40328 -20.97209 -19.63516 -19.31512 -18.33976 -17.59770 -17.54944 -16.83563 -16.41343 -16.02694 -15.85146 -15.48902 -15.09307 -14.85494 -14.78371 -14.39372 -14.03961 -13.87626 -13.59392 -13.42380 -13.33682 -13.10915 -13.02626 -12.75668 -12.70593 -12.49050 -12.41407 -12.30577 -12.04894 -11.97089 -11.76253 -11.65779 -11.26659 -11.25463 -11.17501 -10.97145 -10.75065 -10.60123 -10.56312 -10.20140 -10.10466 -9.97327 -9.57182 -9.39670 -8.58160 -8.19180 -8.12206 -6.30860 -3.82287 2.24355 2.36125 3.02191 3.05972 3.14477 3.45836 3.74686 4.06178 4.10672 4.15494 4.31688 4.37975 4.43815 4.49702 4.56934 4.63226 4.68232 4.69575 4.89154 5.07976 5.09096 5.11934 5.15778 5.18200 5.21617 5.26141 5.27001 5.32224 5.39170 5.43868 5.52213 5.57694 5.62421 5.66284 5.69960 5.81357 5.83893 5.88737 5.92220 5.97056 6.03828 6.21620 6.26913 6.59458 7.09557 7.12356 7.58225 7.60363 7.86053 8.15051 8.60244 8.95400 9.42785 9.83304 10.82353 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033233 B = 0.001373 C = 0.001354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.334393 B =20387.947230 C =20671.727452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.357 6.357 5 C 0.044 3.956 6 C 0.513 3.487 7 O -0.515 6.515 8 N -0.723 5.723 9 C 0.142 3.858 10 H 0.097 0.903 11 C -0.133 4.133 12 C -0.120 4.120 13 C -0.087 4.087 14 H 0.088 0.912 15 C 0.067 3.933 16 N -0.670 5.670 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C -0.122 4.122 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.400 0.600 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.351 0.649 47 H 0.043 0.957 48 H 0.087 0.913 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.072 0.928 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.737 11.731 -26.623 36.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.297 3.703 7 O -0.389 6.389 8 N -0.376 5.376 9 C 0.037 3.963 10 H 0.115 0.885 11 C -0.172 4.172 12 C -0.158 4.158 13 C -0.106 4.106 14 H 0.107 0.893 15 C -0.063 4.063 16 N -0.303 5.303 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.161 4.161 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.234 0.766 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.089 0.911 46 H 0.171 0.829 47 H 0.061 0.939 48 H 0.105 0.895 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.803 11.103 -24.872 36.173 hybrid contribution 1.954 0.787 -2.072 2.955 sum -21.849 11.890 -26.944 36.670 Atomic orbital electron populations 1.21860 0.93167 1.02970 1.02742 1.22189 0.95448 0.92505 0.87717 1.22320 1.01496 0.96692 1.02936 1.88081 1.34473 1.69690 1.35329 1.22234 0.88428 0.97155 0.95830 1.20267 0.81214 0.79021 0.89754 1.90753 1.51746 1.58870 1.37544 1.45906 1.22063 1.54586 1.15089 1.22014 0.97616 0.92524 0.84111 0.88528 1.22737 0.98644 0.97920 0.97920 1.22178 1.00158 0.94743 0.98766 1.21706 0.95027 0.98628 0.95268 0.89334 1.22044 0.93032 0.99600 0.91582 1.60055 1.09760 1.48888 1.11588 1.21701 0.88787 1.01004 0.96985 1.19731 0.82519 0.84032 0.90198 1.90568 1.62691 1.54858 1.36439 1.42210 1.07411 1.64874 1.08578 1.19445 0.92491 1.45756 0.85717 0.86276 1.25034 0.96497 0.97572 0.97021 1.69623 1.11799 1.47594 1.23149 0.86669 0.80917 0.78848 0.82939 1.19694 1.20163 1.19493 1.22623 0.96947 0.98374 0.98136 0.91514 0.91067 0.91843 0.92043 0.91476 0.92499 0.91433 0.90382 0.90308 0.76620 0.91135 0.91524 0.90949 0.91491 0.95540 0.91095 0.82894 0.93905 0.89525 0.79712 0.91624 0.90914 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.56 37.16 0.36 -0.42 16 2 C 0.08 0.45 3.34 -26.73 -0.09 0.36 16 3 C -0.18 -0.86 9.53 37.16 0.35 -0.51 16 4 O -0.36 -3.24 9.52 -55.14 -0.52 -3.76 16 5 C 0.04 0.27 6.23 36.01 0.22 0.50 16 6 C 0.51 4.77 7.90 -10.99 -0.09 4.69 16 7 O -0.52 -7.39 16.23 -14.35 -0.23 -7.62 16 8 N -0.72 -4.84 5.21 -51.89 -0.27 -5.11 16 9 C 0.14 1.16 3.18 -65.95 -0.21 0.95 16 10 H 0.10 0.98 7.71 -51.93 -0.40 0.58 16 11 C -0.13 -1.21 6.51 -25.07 -0.16 -1.37 16 12 C -0.12 -1.18 5.95 -25.61 -0.15 -1.33 16 13 C -0.09 -0.82 3.16 -89.51 -0.28 -1.10 16 14 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 15 C 0.07 0.72 4.81 -3.83 -0.02 0.70 16 16 N -0.67 -10.13 6.12 -115.06 -0.70 -10.84 16 17 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 18 C 0.45 10.23 7.82 -10.99 -0.09 10.14 16 19 O -0.56 -15.24 15.78 5.55 0.09 -15.15 16 20 N -0.59 -14.10 5.09 -10.96 -0.06 -14.15 16 21 C -0.31 -8.68 10.16 -14.93 -0.15 -8.83 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.81 13.96 55.50 0.77 -25.03 16 25 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 29 C -0.12 -0.85 5.96 -25.09 -0.15 -1.00 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.24 7.79 -51.93 -0.40 -0.17 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.26 7.87 -51.93 -0.41 -0.15 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.32 7.87 -51.93 -0.41 -0.09 16 38 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 39 H 0.40 1.40 8.52 -40.82 -0.35 1.05 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.69 6.89 -51.93 -0.36 0.34 16 44 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.35 5.56 7.10 -39.29 -0.28 5.28 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.07 0.41 7.73 -51.93 -0.40 0.01 16 52 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 421.17 15.07 6.35 6.35 Total: -1.00 -36.50 421.17 -9.01 -45.51 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -9.14 Total: 10.65 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -0.58 Total: 4.58 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.26 Total: -55.14 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.67 Total: -26.54 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -36.50 -9.01 -45.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278553018.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.683 kcal (2) G-P(sol) polarization free energy of solvation -36.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds