Wall clock time and date at job start Wed Apr 1 2020 00:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47283 * 2 1 4 4 O 1.42904 * 109.46947 * 119.99870 * 2 1 3 5 5 C 1.42898 * 113.99615 * 149.99675 * 4 2 1 6 6 C 1.50703 * 109.46904 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00132 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00092 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00339 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.81381 * 36.88316 * 9 8 6 11 11 C 1.54887 * 110.75537 * 273.55280 * 9 8 6 12 12 C 1.54268 * 104.19363 * 203.73857 * 11 9 8 13 13 C 1.53875 * 106.59808 * 23.61176 * 12 11 9 14 14 H 1.09004 * 110.02691 * 240.66860 * 13 12 11 15 15 C 1.52998 * 110.03472 * 119.28682 * 13 12 11 16 16 N 1.46896 * 109.47624 * 66.44978 * 15 13 12 17 17 C 1.46899 * 111.00338 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.46987 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00006 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99538 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99773 * 179.72591 * 20 18 17 22 22 H 1.08002 * 119.99671 * 0.27660 * 21 20 18 23 23 C 1.38950 * 120.00030 * 180.27703 * 21 20 18 24 24 N 1.31413 * 119.99930 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47112 * 89.99702 * 25 23 21 27 27 H 1.48498 * 109.47011 * 209.99970 * 25 23 21 28 28 H 1.48494 * 109.47201 * 329.99943 * 25 23 21 29 29 C 1.54259 * 106.59774 * 359.97438 * 13 12 11 30 30 H 1.09004 * 109.46636 * 300.00034 * 1 2 3 31 31 H 1.08998 * 109.47034 * 60.00158 * 1 2 3 32 32 H 1.09004 * 109.47109 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47107 * 239.99722 * 2 1 3 34 34 H 1.08999 * 109.46812 * 59.99877 * 3 2 1 35 35 H 1.08998 * 109.46831 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.46957 * 299.99889 * 3 2 1 37 37 H 1.09003 * 109.47077 * 60.00537 * 5 4 2 38 38 H 1.08997 * 109.47569 * 300.00114 * 5 4 2 39 39 H 0.97000 * 120.00087 * 0.02562 * 8 6 5 40 40 H 1.08997 * 110.48938 * 85.06535 * 11 9 8 41 41 H 1.09000 * 110.59858 * 322.47076 * 11 9 8 42 42 H 1.08993 * 110.03313 * 264.32451 * 12 11 9 43 43 H 1.09002 * 110.07381 * 142.91643 * 12 11 9 44 44 H 1.09004 * 109.46677 * 306.45142 * 15 13 12 45 45 H 1.09004 * 109.46850 * 186.45441 * 15 13 12 46 46 H 1.00898 * 110.99977 * 303.96136 * 16 15 13 47 47 H 1.09003 * 109.46477 * 60.00383 * 17 16 15 48 48 H 1.08993 * 109.47002 * 300.00709 * 17 16 15 49 49 H 0.97001 * 120.00485 * 0.02562 * 20 18 17 50 50 H 0.96999 * 119.99993 * 179.97438 * 24 23 21 51 51 H 1.09003 * 110.48748 * 95.07740 * 29 13 12 52 52 H 1.09003 * 110.49054 * 217.71389 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2659 -1.3245 0.9886 6 6 3.6699 -1.9978 2.2750 7 8 2.9498 -1.9276 3.2483 8 7 4.8308 -2.6789 2.3434 9 6 5.2233 -3.3339 3.5937 10 1 4.3540 -3.7515 4.1017 11 6 5.9769 -2.3457 4.5181 12 6 6.8231 -3.2544 5.4336 13 6 7.0184 -4.5803 4.6776 14 1 6.5879 -5.4027 5.2490 15 6 8.5083 -4.8325 4.4379 16 7 9.1799 -5.0586 5.7247 17 6 10.6153 -5.3054 5.5331 18 6 11.2691 -5.5318 6.8719 19 8 10.6045 -5.4920 7.8858 20 7 12.5920 -5.7795 6.9424 21 6 13.1879 -5.9799 8.1609 22 1 12.5963 -5.9436 9.0637 23 6 14.5528 -6.2296 8.2341 24 7 15.1240 -6.4211 9.4020 25 14 15.5760 -6.2915 6.6725 26 1 16.0928 -4.9337 6.3651 27 1 16.7162 -7.2234 6.8644 28 1 14.7325 -6.7666 5.5465 29 6 6.2835 -4.4313 3.3295 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 4.0200 -0.5874 0.7125 38 1 3.1809 -2.0707 0.1987 39 1 5.4066 -2.7354 1.5649 40 1 5.2709 -1.7612 5.1081 41 1 6.6202 -1.6882 3.9333 42 1 6.2972 -3.4332 6.3713 43 1 7.7898 -2.7910 5.6304 44 1 8.9488 -3.9656 3.9455 45 1 8.6307 -5.7113 3.8047 46 1 9.0264 -4.2847 6.3536 47 1 11.0708 -4.4420 5.0481 48 1 10.7520 -6.1875 4.9077 49 1 13.1234 -5.8117 6.1316 50 1 16.0768 -6.5958 9.4531 51 1 6.9762 -4.1122 2.5507 52 1 5.8017 -5.3688 3.0519 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278553018.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:11 Heat of formation + Delta-G solvation = -159.174857 kcal Electronic energy + Delta-G solvation = -28742.334273 eV Core-core repulsion = 24547.043763 eV Total energy + Delta-G solvation = -4195.290509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.10099 -40.32753 -39.58020 -38.74776 -36.61748 -35.87946 -34.59520 -33.74379 -33.67561 -30.94083 -29.85817 -28.73484 -28.09599 -27.37959 -25.73761 -24.02475 -22.27088 -22.07592 -21.67016 -21.27700 -20.45225 -20.12851 -18.21217 -18.15309 -17.84913 -17.37003 -17.03576 -16.79422 -16.66047 -16.38509 -15.83901 -15.61156 -15.40497 -15.17370 -15.03088 -14.69649 -14.56955 -14.24440 -14.14106 -13.90768 -13.79189 -13.54205 -13.46918 -13.13801 -13.07040 -13.04341 -12.89424 -12.75961 -12.47809 -12.40902 -12.34525 -12.02689 -11.95740 -11.70493 -11.64416 -11.55877 -11.50125 -11.37324 -10.86002 -10.63759 -10.42557 -10.24508 -10.07787 -9.26525 -8.40799 -6.02106 1.31013 1.36537 1.45857 1.57047 1.82175 1.96778 2.24052 2.75327 3.01070 3.15831 3.44426 3.53021 3.66935 3.77896 3.98993 4.02041 4.10281 4.17479 4.21676 4.27974 4.29154 4.33172 4.37529 4.45377 4.47706 4.54591 4.59313 4.64963 4.69582 4.74585 4.82435 4.85942 4.90939 4.91227 4.94098 5.08722 5.12436 5.18473 5.29172 5.31534 5.32674 5.46204 5.53721 5.57181 5.92275 6.11282 6.17882 6.43040 6.59046 6.60712 6.88736 7.26227 7.40487 7.97724 8.77052 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033233 B = 0.001373 C = 0.001354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.334393 B =20387.947230 C =20671.727452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 C -0.175 4.175 4 O -0.397 6.397 5 C 0.045 3.955 6 C 0.506 3.494 7 O -0.577 6.577 8 N -0.704 5.704 9 C 0.143 3.857 10 H 0.070 0.930 11 C -0.127 4.127 12 C -0.120 4.120 13 C -0.084 4.084 14 H 0.071 0.929 15 C 0.071 3.929 16 N -0.693 5.693 17 C 0.063 3.937 18 C 0.446 3.554 19 O -0.617 6.617 20 N -0.590 5.590 21 C -0.331 4.331 22 H 0.053 0.947 23 C -0.015 4.015 24 N -0.936 5.936 25 Si 0.967 3.033 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.229 1.229 29 C -0.106 4.106 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.420 0.580 40 H 0.046 0.954 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.086 0.914 46 H 0.342 0.658 47 H 0.078 0.922 48 H 0.115 0.885 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.100 0.900 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.493 11.924 -32.522 40.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 C -0.233 4.233 4 O -0.316 6.316 5 C -0.035 4.035 6 C 0.293 3.707 7 O -0.456 6.456 8 N -0.358 5.358 9 C 0.038 3.962 10 H 0.088 0.912 11 C -0.166 4.166 12 C -0.158 4.158 13 C -0.103 4.103 14 H 0.089 0.911 15 C -0.058 4.058 16 N -0.326 5.326 17 C -0.070 4.070 18 C 0.234 3.766 19 O -0.501 6.501 20 N -0.232 5.232 21 C -0.461 4.461 22 H 0.071 0.929 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.786 3.214 26 H -0.181 1.181 27 H -0.201 1.201 28 H -0.152 1.152 29 C -0.144 4.144 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.258 0.742 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.161 0.839 47 H 0.096 0.904 48 H 0.133 0.867 49 H 0.226 0.774 50 H 0.089 0.911 51 H 0.118 0.882 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.549 11.291 -30.845 39.842 hybrid contribution 1.461 0.747 -0.102 1.644 sum -21.088 12.038 -30.947 39.336 Atomic orbital electron populations 1.21903 0.93391 1.02634 1.02954 1.22393 0.95428 0.92887 0.87636 1.22313 1.01822 0.96263 1.02863 1.88046 1.35790 1.70392 1.37385 1.22397 0.88257 0.98337 0.94468 1.20977 0.81002 0.78504 0.90187 1.90730 1.53734 1.61257 1.39873 1.45725 1.21608 1.53261 1.15217 1.21843 0.97012 0.92797 0.84573 0.91157 1.22659 0.98226 0.97887 0.97839 1.22133 0.99758 0.95503 0.98397 1.21645 0.94870 0.97367 0.96459 0.91090 1.22137 0.92847 1.01130 0.89661 1.60071 1.09375 1.49185 1.13945 1.21631 0.89097 1.03654 0.92568 1.21102 0.81910 0.81264 0.92334 1.90548 1.63855 1.56371 1.39348 1.42027 1.08136 1.65458 1.07604 1.19022 0.93008 1.48208 0.85836 0.92891 1.26143 0.97390 0.95872 1.01947 1.69813 1.12621 1.48458 1.26730 0.85340 0.78522 0.79621 0.77868 1.18083 1.20073 1.15245 1.22523 0.96464 0.98245 0.97197 0.93254 0.88896 0.92440 0.89554 0.93375 0.91942 0.89664 0.87656 0.87094 0.74185 0.93506 0.90170 0.92796 0.91865 0.93469 0.89541 0.83914 0.90435 0.86674 0.77380 0.91146 0.88159 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.56 71.98 0.69 -0.78 16 2 C 0.07 0.72 3.34 30.60 0.10 0.82 16 3 C -0.18 -1.43 9.53 71.98 0.69 -0.75 16 4 O -0.40 -6.88 9.52 -129.94 -1.24 -8.11 16 5 C 0.04 0.46 6.23 71.24 0.44 0.90 16 6 C 0.51 8.96 7.90 87.66 0.69 9.65 16 7 O -0.58 -17.25 16.23 16.02 0.26 -16.99 16 8 N -0.70 -7.86 5.21 -436.48 -2.27 -10.14 16 9 C 0.14 2.18 3.18 46.27 0.15 2.33 16 10 H 0.07 1.48 7.71 -2.39 -0.02 1.46 16 11 C -0.13 -2.25 6.51 31.67 0.21 -2.05 16 12 C -0.12 -2.33 5.95 31.32 0.19 -2.14 16 13 C -0.08 -1.43 3.16 -10.07 -0.03 -1.46 16 14 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 15 C 0.07 1.26 4.81 86.30 0.42 1.68 16 16 N -0.69 -19.60 6.12 -517.94 -3.17 -22.77 16 17 C 0.06 1.84 6.17 85.56 0.53 2.37 16 18 C 0.45 20.11 7.82 87.66 0.69 20.79 16 19 O -0.62 -34.66 15.78 -3.07 -0.05 -34.70 16 20 N -0.59 -27.73 5.09 -306.98 -1.56 -29.30 16 21 C -0.33 -19.54 10.16 84.04 0.85 -18.69 16 22 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 24 N -0.94 -56.62 13.96 21.66 0.30 -56.32 16 25 Si 0.97 38.32 27.74 68.60 1.90 40.22 16 26 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 27 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 28 H -0.23 -7.55 6.52 99.48 0.65 -6.90 16 29 C -0.11 -1.14 5.96 31.66 0.19 -0.95 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.09 0.39 7.79 -2.39 -0.02 0.37 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.43 7.87 -2.39 -0.02 0.41 16 36 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.11 0.49 7.87 -2.39 -0.02 0.47 16 38 H 0.11 0.41 8.08 -2.39 -0.02 0.39 16 39 H 0.42 1.24 8.52 -92.71 -0.79 0.45 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 1.27 6.89 -2.39 -0.02 1.26 16 44 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.34 10.67 7.10 -89.70 -0.64 10.03 16 47 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 49 H 0.39 14.95 5.76 -92.71 -0.53 14.41 16 50 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 51 H 0.10 0.59 7.73 -2.39 -0.02 0.58 16 52 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -89.11 421.17 -0.66 -89.77 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -1.09 Total: 36.97 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.26 Total: 11.36 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -6.71 Total: -118.52 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: -1.03 Total: -59.80 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.22 kcal Total: -89.11 -0.66 -89.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278553018.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.407 kcal (2) G-P(sol) polarization free energy of solvation -89.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds