Wall clock time and date at job start Wed Apr 1 2020 00:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 O 1.42905 * 109.46735 * 179.97438 * 3 2 1 5 5 C 1.42899 * 113.99785 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47170 * 179.97438 * 5 4 3 7 7 O 1.21289 * 120.00071 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00355 * 180.02562 * 6 5 4 9 9 C 1.47025 * 125.64656 * 0.02665 * 8 6 5 10 10 C 1.54328 * 107.26868 * 181.02027 * 9 8 6 11 11 C 1.55151 * 102.94288 * 22.19956 * 10 9 8 12 12 H 1.09001 * 111.01156 * 82.56823 * 11 10 9 13 13 C 1.53005 * 111.00423 * 206.42473 * 11 10 9 14 14 H 1.08994 * 109.47095 * 59.99047 * 13 11 10 15 15 C 1.53009 * 109.46512 * 299.99424 * 13 11 10 16 16 N 1.46896 * 109.47343 * 180.02562 * 13 11 10 17 17 C 1.46894 * 111.00017 * 204.99649 * 16 13 11 18 18 C 1.50701 * 109.47489 * 179.97438 * 17 16 13 19 19 O 1.21298 * 119.99395 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00150 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99536 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00258 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99229 * 180.02562 * 21 20 18 24 24 N 1.31420 * 119.99545 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00752 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46922 * 89.99561 * 25 23 21 27 27 H 1.48500 * 109.47552 * 210.00285 * 25 23 21 28 28 H 1.48500 * 109.46754 * 330.00081 * 25 23 21 29 29 C 1.47423 * 125.65145 * 179.72002 * 8 6 5 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 33 33 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 34 34 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 35 35 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 36 36 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 37 37 H 1.08997 * 109.47516 * 300.00458 * 5 4 3 38 38 H 1.09005 * 109.46944 * 60.00925 * 5 4 3 39 39 H 1.09000 * 109.88525 * 300.44154 * 9 8 6 40 40 H 1.09001 * 109.87946 * 61.61008 * 9 8 6 41 41 H 1.08999 * 110.71479 * 140.55924 * 10 9 8 42 42 H 1.08996 * 110.72033 * 263.82941 * 10 9 8 43 43 H 1.08994 * 109.47027 * 300.00146 * 15 13 11 44 44 H 1.09004 * 109.46976 * 60.00644 * 15 13 11 45 45 H 1.09002 * 109.46806 * 179.97438 * 15 13 11 46 46 H 1.00906 * 110.99766 * 328.95015 * 16 13 11 47 47 H 1.09000 * 109.47525 * 299.99725 * 17 16 13 48 48 H 1.09007 * 109.47056 * 59.99546 * 17 16 13 49 49 H 0.96999 * 119.99838 * 0.02562 * 20 18 17 50 50 H 0.96998 * 120.00084 * 180.02562 * 24 23 21 51 51 H 1.08993 * 110.36808 * 274.74801 * 29 8 6 52 52 H 1.09006 * 110.36635 * 37.06846 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0501 2.7480 0.0001 6 6 5.5524 2.6291 0.0014 7 8 6.0741 1.5342 0.0022 8 7 6.3163 3.7395 0.0017 9 6 5.8177 5.1226 0.0014 10 6 7.0485 6.0533 -0.0243 11 6 8.1607 5.1426 -0.6083 12 1 8.1097 5.1124 -1.6967 13 6 9.5442 5.5968 -0.1387 14 1 9.5913 5.5523 0.9494 15 6 9.7935 7.0338 -0.6015 16 7 10.5697 4.7140 -0.7104 17 6 11.7801 4.7050 0.1218 18 6 12.8068 3.7902 -0.4945 19 8 12.5551 3.2036 -1.5260 20 7 14.0051 3.6245 0.0998 21 6 14.9389 2.7917 -0.4608 22 1 14.7145 2.2688 -1.3787 23 6 16.1740 2.6205 0.1523 24 7 17.0694 1.8227 -0.3853 25 14 16.5620 3.5243 1.7403 26 1 16.1503 2.6901 2.8978 27 1 18.0212 3.7895 1.8153 28 1 15.8228 4.8119 1.7703 29 6 7.7903 3.7684 0.0088 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.6767 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.7288 3.2885 -0.8903 38 1 3.7282 3.2894 0.8897 39 1 5.2039 5.2952 -0.8827 40 1 5.2331 5.3060 0.9028 41 1 6.8706 6.9099 -0.6745 42 1 7.3065 6.3795 0.9832 43 1 9.7463 7.0783 -1.6895 44 1 9.0327 7.6892 -0.1776 45 1 10.7790 7.3575 -0.2666 46 1 10.2117 3.7792 -0.8381 47 1 12.1847 5.7151 0.1856 48 1 11.5309 4.3497 1.1218 49 1 14.2065 4.0938 0.9244 50 1 17.9315 1.7029 0.0428 51 1 8.1662 3.6944 1.0292 52 1 8.1885 2.9587 -0.6027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278983353.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:39 Heat of formation + Delta-G solvation = -116.646195 kcal Electronic energy + Delta-G solvation = -29435.984079 eV Core-core repulsion = 25242.537751 eV Total energy + Delta-G solvation = -4193.446328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.51951 -38.96966 -38.34833 -37.66595 -35.92211 -34.10126 -33.94088 -32.37879 -31.61330 -29.97354 -29.77940 -28.11164 -26.61608 -26.00526 -24.02237 -23.56641 -22.04814 -22.00023 -20.27482 -19.69554 -19.31264 -18.31773 -17.67424 -17.21738 -16.88166 -16.59491 -15.80854 -15.77603 -15.42543 -15.10158 -14.93356 -14.63822 -14.34838 -14.15877 -14.00583 -13.74077 -13.52269 -13.25240 -13.05594 -12.81979 -12.70469 -12.52190 -12.42188 -12.40564 -12.34165 -12.16493 -12.01505 -11.89744 -11.47966 -11.37821 -11.32858 -11.21228 -11.15663 -11.03293 -10.70447 -10.57544 -10.13145 -10.01495 -9.94776 -9.54528 -8.97356 -8.55815 -8.18708 -8.13103 -6.28199 -3.79539 2.30703 2.33622 3.04220 3.08500 3.16626 3.40560 3.76814 3.90116 4.11798 4.13364 4.14785 4.41100 4.48163 4.51361 4.57077 4.66494 4.72166 4.80488 4.82045 4.85079 4.96330 4.99796 5.01681 5.11891 5.18459 5.23009 5.26298 5.27814 5.37207 5.45616 5.53292 5.55620 5.58538 5.68199 5.68662 5.71069 5.77102 5.82335 5.84661 5.94152 5.95978 6.00939 6.26636 6.64024 7.11643 7.16333 7.56640 7.61247 7.89761 8.17689 8.62730 8.98066 9.45371 9.85821 10.85013 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.001829 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.648238 B =15303.413466 C =16615.572260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.052 3.948 6 C 0.527 3.473 7 O -0.512 6.512 8 N -0.619 5.619 9 C 0.097 3.903 10 C -0.123 4.123 11 C -0.101 4.101 12 H 0.098 0.902 13 C 0.095 3.905 14 H 0.045 0.955 15 C -0.140 4.140 16 N -0.665 5.665 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.106 3.894 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.351 0.649 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.069 0.931 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.176 11.206 5.550 34.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.283 6.283 5 C -0.028 4.028 6 C 0.314 3.686 7 O -0.386 6.386 8 N -0.356 5.356 9 C -0.026 4.026 10 C -0.161 4.161 11 C -0.121 4.121 12 H 0.117 0.883 13 C -0.015 4.015 14 H 0.063 0.937 15 C -0.198 4.198 16 N -0.299 5.299 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.445 6.445 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.016 4.016 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.172 0.828 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -31.561 10.297 4.418 33.491 hybrid contribution 0.101 0.516 2.089 2.154 sum -31.460 10.812 6.507 33.896 Atomic orbital electron populations 1.21697 0.94604 1.02410 1.01940 1.21460 0.95625 0.95315 1.03846 1.22646 0.80330 0.98448 1.00206 1.88024 1.19682 1.25137 1.95413 1.22122 0.91325 0.86944 1.02404 1.19905 0.88332 0.83337 0.77054 1.90787 1.74377 1.25691 1.47743 1.48383 1.07335 1.05629 1.74288 1.22128 0.97570 0.81166 1.01709 1.22684 0.93356 0.97637 1.02452 1.22618 0.94133 0.93531 1.01800 0.88344 1.21479 0.89013 0.94455 0.96572 0.93709 1.21812 1.01308 0.94293 1.02366 1.60149 1.04559 1.15801 1.49370 1.21755 0.91777 1.00527 0.94408 1.19715 0.83417 0.86266 0.87068 1.90575 1.78864 1.50582 1.24467 1.42204 1.13973 1.42798 1.24085 1.19443 0.92899 1.21025 1.09963 0.86274 1.25037 0.95663 0.97221 0.98240 1.69627 1.06602 1.36416 1.39524 0.86669 0.78930 0.79910 0.83857 1.19684 1.20185 1.19504 1.22427 0.79244 0.98597 1.01333 0.91868 0.92546 0.92518 0.90893 0.90842 0.93116 0.93180 0.90303 0.90411 0.91137 0.91263 0.89390 0.90160 0.91713 0.92685 0.92492 0.82794 0.89452 0.93782 0.79729 0.91645 0.91275 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.85 6.30 -26.73 -0.17 -1.02 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 O -0.36 -4.03 9.88 -55.14 -0.54 -4.58 16 5 C 0.05 0.44 5.61 36.00 0.20 0.64 16 6 C 0.53 6.50 7.93 -10.99 -0.09 6.42 16 7 O -0.51 -9.04 16.75 -14.36 -0.24 -9.28 16 8 N -0.62 -6.15 3.32 -170.37 -0.57 -6.71 16 9 C 0.10 0.56 6.49 -3.06 -0.02 0.54 16 10 C -0.12 -0.69 5.28 -24.90 -0.13 -0.83 16 11 C -0.10 -0.90 2.68 -88.35 -0.24 -1.14 16 12 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 13 C 0.10 0.99 2.18 -67.71 -0.15 0.85 16 14 H 0.05 0.44 7.73 -51.93 -0.40 0.04 16 15 C -0.14 -1.31 9.19 37.16 0.34 -0.97 16 16 N -0.67 -9.97 5.93 -107.99 -0.64 -10.61 16 17 C 0.05 0.79 5.96 -4.98 -0.03 0.76 16 18 C 0.45 10.34 7.82 -10.98 -0.09 10.25 16 19 O -0.56 -15.40 15.78 5.54 0.09 -15.31 16 20 N -0.59 -14.27 5.09 -10.96 -0.06 -14.33 16 21 C -0.30 -8.76 10.16 -14.93 -0.15 -8.91 16 22 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 23 C 0.04 1.15 5.50 -17.46 -0.10 1.05 16 24 N -0.88 -26.11 13.96 55.50 0.77 -25.34 16 25 Si 0.88 19.59 27.74 -169.99 -4.71 14.88 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 29 C 0.11 1.16 5.69 -2.41 -0.01 1.15 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.37 8.11 -51.93 -0.42 -0.05 16 42 H 0.08 0.41 8.04 -51.93 -0.42 0.00 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.38 7.28 -51.93 -0.38 0.00 16 45 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 46 H 0.35 5.67 7.03 -39.29 -0.28 5.40 16 47 H 0.09 1.28 7.44 -51.93 -0.39 0.90 16 48 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 49 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 50 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.07 0.76 7.99 -51.93 -0.41 0.35 16 52 H 0.09 1.15 7.63 -51.93 -0.40 0.76 16 LS Contribution 419.88 15.07 6.33 6.33 Total: -1.00 -37.34 419.88 -8.79 -46.13 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -9.18 Total: 9.71 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -0.04 Total: 9.11 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.49 Total: -56.99 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.70 Total: -29.16 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -37.34 -8.79 -46.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278983353.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.513 kcal (2) G-P(sol) polarization free energy of solvation -37.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds