Wall clock time and date at job start Wed Apr 1 2020 00:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 O 1.42905 * 109.46735 * 179.97438 * 3 2 1 5 5 C 1.42899 * 113.99785 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47170 * 179.97438 * 5 4 3 7 7 O 1.21289 * 120.00071 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00355 * 180.02562 * 6 5 4 9 9 C 1.47025 * 125.64656 * 0.02665 * 8 6 5 10 10 C 1.54328 * 107.26868 * 181.02027 * 9 8 6 11 11 C 1.55151 * 102.94288 * 22.19956 * 10 9 8 12 12 H 1.09001 * 111.01156 * 82.56823 * 11 10 9 13 13 C 1.53005 * 111.00423 * 206.42473 * 11 10 9 14 14 H 1.08994 * 109.47095 * 59.99047 * 13 11 10 15 15 C 1.53009 * 109.46512 * 299.99424 * 13 11 10 16 16 N 1.46896 * 109.47343 * 180.02562 * 13 11 10 17 17 C 1.46894 * 111.00017 * 204.99649 * 16 13 11 18 18 C 1.50701 * 109.47489 * 179.97438 * 17 16 13 19 19 O 1.21298 * 119.99395 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00150 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99536 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00258 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99229 * 180.02562 * 21 20 18 24 24 N 1.31420 * 119.99545 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00752 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46922 * 89.99561 * 25 23 21 27 27 H 1.48500 * 109.47552 * 210.00285 * 25 23 21 28 28 H 1.48500 * 109.46754 * 330.00081 * 25 23 21 29 29 C 1.47423 * 125.65145 * 179.72002 * 8 6 5 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 33 33 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 34 34 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 35 35 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 36 36 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 37 37 H 1.08997 * 109.47516 * 300.00458 * 5 4 3 38 38 H 1.09005 * 109.46944 * 60.00925 * 5 4 3 39 39 H 1.09000 * 109.88525 * 300.44154 * 9 8 6 40 40 H 1.09001 * 109.87946 * 61.61008 * 9 8 6 41 41 H 1.08999 * 110.71479 * 140.55924 * 10 9 8 42 42 H 1.08996 * 110.72033 * 263.82941 * 10 9 8 43 43 H 1.08994 * 109.47027 * 300.00146 * 15 13 11 44 44 H 1.09004 * 109.46976 * 60.00644 * 15 13 11 45 45 H 1.09002 * 109.46806 * 179.97438 * 15 13 11 46 46 H 1.00906 * 110.99766 * 328.95015 * 16 13 11 47 47 H 1.09000 * 109.47525 * 299.99725 * 17 16 13 48 48 H 1.09007 * 109.47056 * 59.99546 * 17 16 13 49 49 H 0.96999 * 119.99838 * 0.02562 * 20 18 17 50 50 H 0.96998 * 120.00084 * 180.02562 * 24 23 21 51 51 H 1.08993 * 110.36808 * 274.74801 * 29 8 6 52 52 H 1.09006 * 110.36635 * 37.06846 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0501 2.7480 0.0001 6 6 5.5524 2.6291 0.0014 7 8 6.0741 1.5342 0.0022 8 7 6.3163 3.7395 0.0017 9 6 5.8177 5.1226 0.0014 10 6 7.0485 6.0533 -0.0243 11 6 8.1607 5.1426 -0.6083 12 1 8.1097 5.1124 -1.6967 13 6 9.5442 5.5968 -0.1387 14 1 9.5913 5.5523 0.9494 15 6 9.7935 7.0338 -0.6015 16 7 10.5697 4.7140 -0.7104 17 6 11.7801 4.7050 0.1218 18 6 12.8068 3.7902 -0.4945 19 8 12.5551 3.2036 -1.5260 20 7 14.0051 3.6245 0.0998 21 6 14.9389 2.7917 -0.4608 22 1 14.7145 2.2688 -1.3787 23 6 16.1740 2.6205 0.1523 24 7 17.0694 1.8227 -0.3853 25 14 16.5620 3.5243 1.7403 26 1 16.1503 2.6901 2.8978 27 1 18.0212 3.7895 1.8153 28 1 15.8228 4.8119 1.7703 29 6 7.7903 3.7684 0.0088 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.6767 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.7288 3.2885 -0.8903 38 1 3.7282 3.2894 0.8897 39 1 5.2039 5.2952 -0.8827 40 1 5.2331 5.3060 0.9028 41 1 6.8706 6.9099 -0.6745 42 1 7.3065 6.3795 0.9832 43 1 9.7463 7.0783 -1.6895 44 1 9.0327 7.6892 -0.1776 45 1 10.7790 7.3575 -0.2666 46 1 10.2117 3.7792 -0.8381 47 1 12.1847 5.7151 0.1856 48 1 11.5309 4.3497 1.1218 49 1 14.2065 4.0938 0.9244 50 1 17.9315 1.7029 0.0428 51 1 8.1662 3.6944 1.0292 52 1 8.1885 2.9587 -0.6027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278983353.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:38 Heat of formation + Delta-G solvation = -146.049241 kcal Electronic energy + Delta-G solvation = -29437.259091 eV Core-core repulsion = 25242.537751 eV Total energy + Delta-G solvation = -4194.721340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32910 -40.36897 -39.49304 -38.54256 -36.98419 -35.96784 -34.61607 -33.79991 -33.31155 -30.86831 -30.43258 -28.75359 -28.15187 -26.56531 -25.69162 -24.29895 -22.86792 -22.49724 -21.35826 -21.01755 -20.47423 -20.17019 -18.46202 -18.09959 -17.67008 -17.53167 -17.16454 -16.72857 -16.54041 -16.48734 -16.01433 -15.75445 -15.31438 -15.06551 -14.96782 -14.80716 -14.60425 -14.46781 -14.29999 -14.06132 -13.83208 -13.39393 -13.38105 -13.16667 -13.05966 -13.04504 -12.95008 -12.90318 -12.58330 -12.43591 -12.33183 -12.00608 -11.90756 -11.85468 -11.81807 -11.71836 -11.53243 -11.47008 -10.96099 -10.71262 -10.44890 -10.26592 -9.76794 -9.33221 -8.42632 -6.04024 1.28777 1.34764 1.43824 1.45618 1.59743 1.94139 2.22150 2.69593 2.83217 3.13608 3.30335 3.42174 3.57995 3.68703 3.84048 4.01029 4.05353 4.14033 4.16615 4.18491 4.25963 4.35066 4.38701 4.39528 4.40583 4.46733 4.54101 4.56815 4.63262 4.63563 4.69201 4.81916 4.82586 4.94897 5.01808 5.04269 5.15200 5.15697 5.21109 5.22993 5.33457 5.35980 5.51118 5.54050 5.90296 6.07454 6.09786 6.35628 6.41929 6.58388 6.86451 7.03920 7.37920 7.95216 8.75243 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.001829 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.648238 B =15303.413466 C =16615.572260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.057 3.943 4 O -0.407 6.407 5 C 0.057 3.943 6 C 0.513 3.487 7 O -0.585 6.585 8 N -0.616 5.616 9 C 0.090 3.910 10 C -0.112 4.112 11 C -0.093 4.093 12 H 0.084 0.916 13 C 0.096 3.904 14 H 0.062 0.938 15 C -0.136 4.136 16 N -0.686 5.686 17 C 0.063 3.937 18 C 0.446 3.554 19 O -0.617 6.617 20 N -0.590 5.590 21 C -0.332 4.332 22 H 0.052 0.948 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.967 3.033 26 H -0.258 1.258 27 H -0.273 1.273 28 H -0.229 1.229 29 C 0.102 3.898 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.339 0.661 47 H 0.117 0.883 48 H 0.074 0.926 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.067 0.933 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.870 15.919 8.630 39.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.019 4.019 4 O -0.327 6.327 5 C -0.022 4.022 6 C 0.303 3.697 7 O -0.465 6.465 8 N -0.351 5.351 9 C -0.031 4.031 10 C -0.150 4.150 11 C -0.112 4.112 12 H 0.103 0.897 13 C -0.013 4.013 14 H 0.079 0.921 15 C -0.194 4.194 16 N -0.319 5.319 17 C -0.069 4.069 18 C 0.234 3.766 19 O -0.501 6.501 20 N -0.232 5.232 21 C -0.461 4.461 22 H 0.070 0.930 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.787 3.213 26 H -0.183 1.183 27 H -0.198 1.198 28 H -0.152 1.152 29 C -0.021 4.021 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.158 0.842 47 H 0.134 0.866 48 H 0.092 0.908 49 H 0.226 0.774 50 H 0.089 0.911 51 H 0.085 0.915 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -34.299 15.100 7.505 38.220 hybrid contribution 0.902 -1.011 0.995 1.680 sum -33.398 14.089 8.499 37.231 Atomic orbital electron populations 1.21661 0.92672 1.02848 1.02864 1.21507 0.97275 0.95483 1.02407 1.22834 0.78530 0.98565 1.01954 1.87985 1.21872 1.27000 1.95804 1.22260 0.88050 0.86567 1.05291 1.20819 0.90273 0.82790 0.75818 1.90746 1.75889 1.28489 1.51363 1.48518 1.06773 1.07154 1.72613 1.22510 0.98149 0.78242 1.04210 1.22740 0.91268 0.97424 1.03546 1.22492 0.94725 0.93050 1.00963 0.89715 1.21638 0.88227 0.94128 0.97343 0.92059 1.21813 1.02198 0.93691 1.01690 1.60209 1.05540 1.15789 1.50394 1.21678 0.90321 0.99911 0.95007 1.21082 0.83822 0.85614 0.86103 1.90552 1.79891 1.52614 1.27051 1.42020 1.13698 1.42620 1.24848 1.19015 0.95167 1.22908 1.09000 0.92956 1.26155 0.94410 0.97791 1.03047 1.69815 1.07404 1.38235 1.42079 0.85337 0.79102 0.79862 0.77033 1.18264 1.19840 1.15204 1.22360 0.80419 0.98769 1.00557 0.91755 0.91505 0.91617 0.92293 0.92438 0.91358 0.91181 0.87304 0.86995 0.88985 0.88391 0.86916 0.88608 0.93057 0.89215 0.93091 0.84241 0.86558 0.90775 0.77410 0.91118 0.91466 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.13 -1.75 6.30 30.60 0.19 -1.56 16 3 C 0.06 0.72 5.94 71.98 0.43 1.15 16 4 O -0.41 -8.89 9.88 -129.94 -1.28 -10.17 16 5 C 0.06 0.86 5.61 71.24 0.40 1.26 16 6 C 0.51 12.77 7.93 87.66 0.69 13.46 16 7 O -0.59 -22.26 16.75 15.98 0.27 -21.99 16 8 N -0.62 -11.55 3.32 -811.33 -2.70 -14.24 16 9 C 0.09 0.66 6.49 86.73 0.56 1.22 16 10 C -0.11 -0.75 5.28 31.78 0.17 -0.58 16 11 C -0.09 -1.48 2.68 -9.32 -0.03 -1.50 16 12 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 13 C 0.10 1.76 2.18 44.92 0.10 1.86 16 14 H 0.06 0.97 7.73 -2.39 -0.02 0.95 16 15 C -0.14 -2.07 9.19 71.99 0.66 -1.41 16 16 N -0.69 -20.25 5.93 -495.57 -2.94 -23.19 16 17 C 0.06 1.96 5.96 85.56 0.51 2.47 16 18 C 0.45 20.87 7.82 87.66 0.69 21.56 16 19 O -0.62 -35.77 15.78 -3.09 -0.05 -35.82 16 20 N -0.59 -28.67 5.09 -306.97 -1.56 -30.23 16 21 C -0.33 -20.05 10.16 84.04 0.85 -19.19 16 22 H 0.05 3.78 7.39 -2.91 -0.02 3.75 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 24 N -0.93 -57.63 13.96 21.66 0.30 -57.33 16 25 Si 0.97 39.46 27.74 68.60 1.90 41.36 16 26 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 29 C 0.10 2.26 5.69 86.93 0.49 2.76 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.11 0.30 8.11 -2.39 -0.02 0.28 16 42 H 0.10 0.43 8.04 -2.39 -0.02 0.41 16 43 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.09 0.75 7.28 -2.38 -0.02 0.74 16 45 H 0.05 0.85 7.45 -2.39 -0.02 0.83 16 46 H 0.34 11.46 7.03 -89.69 -0.63 10.83 16 47 H 0.12 3.00 7.44 -2.39 -0.02 2.98 16 48 H 0.07 1.90 8.06 -2.38 -0.02 1.88 16 49 H 0.39 15.56 5.76 -92.71 -0.53 15.03 16 50 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 51 H 0.07 1.49 7.99 -2.39 -0.02 1.47 16 52 H 0.04 1.34 7.63 -2.38 -0.02 1.32 16 Total: -1.00 -93.77 419.88 0.53 -93.24 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: -0.31 Total: 37.72 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 6.90 Total: 20.65 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -6.90 Total: -124.99 kcal Atomic # 8 Polarization: -66.91 SS G_CDS: -1.06 Total: -67.98 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.90 Total: 41.36 kcal Total: -93.77 0.53 -93.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278983353.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.811 kcal (2) G-P(sol) polarization free energy of solvation -93.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds